Wall clock time and date at job start Tue Mar 31 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00603 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46818 * 65.00401 * 4 3 2 6 6 C 1.37102 * 119.99719 * 264.54417 * 5 4 3 7 7 H 1.07995 * 119.99835 * 145.65379 * 6 5 4 8 8 C 1.38947 * 120.00077 * 325.65392 * 6 5 4 9 9 N 1.31409 * 120.00305 * 338.16288 * 8 6 5 10 10 Si 1.86803 * 119.99865 * 158.15532 * 8 6 5 11 11 H 1.48504 * 109.46831 * 60.00442 * 10 8 6 12 12 H 1.48497 * 109.46984 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47515 * 300.00356 * 10 8 6 14 14 C 1.34773 * 120.00034 * 84.55034 * 5 4 3 15 15 O 1.21288 * 120.00172 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.99706 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.46894 * 179.97438 * 16 14 5 18 18 C 1.50698 * 109.47008 * 179.97438 * 17 16 14 19 19 N 1.30112 * 124.95057 * 304.97815 * 18 17 16 20 20 C 1.35790 * 109.64320 * 180.02562 * 19 18 17 21 21 C 1.39737 * 133.60472 * 179.97438 * 20 19 18 22 22 C 1.36596 * 119.88768 * 179.72944 * 21 20 19 23 23 C 1.38777 * 120.67056 * 0.28307 * 22 21 20 24 24 C 1.37850 * 120.44962 * 359.97438 * 23 22 21 25 25 C 1.38837 * 119.68990 * 0.02562 * 24 23 22 26 26 N 1.36046 * 124.95120 * 125.59610 * 18 17 16 27 27 H 0.97003 * 126.34063 * 359.39768 * 26 18 17 28 28 H 1.09003 * 109.47002 * 59.99314 * 1 2 3 29 29 H 1.08997 * 109.47703 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46754 * 300.00643 * 1 2 3 31 31 H 1.09000 * 109.46915 * 59.99808 * 3 2 1 32 32 H 1.09000 * 109.47335 * 300.00340 * 3 2 1 33 33 H 1.08994 * 109.47494 * 305.00052 * 4 3 2 34 34 H 1.09005 * 109.46950 * 185.00172 * 4 3 2 35 35 H 0.97001 * 120.00434 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46954 * 60.00121 * 16 14 5 37 37 H 1.08997 * 109.47288 * 300.00337 * 16 14 5 38 38 H 1.09005 * 109.47063 * 60.00381 * 17 16 14 39 39 H 1.09002 * 109.47161 * 300.00134 * 17 16 14 40 40 H 1.08010 * 120.05449 * 0.02562 * 21 20 19 41 41 H 1.08000 * 119.66738 * 180.29845 * 22 21 20 42 42 H 1.08005 * 119.77323 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.15375 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9767 0.5637 -1.2510 6 6 4.2055 -0.7871 -1.3028 7 1 3.9866 -1.3375 -2.2058 8 6 4.7190 -1.4478 -0.1936 9 7 5.3770 -0.7765 0.7248 10 14 4.4740 -3.2903 -0.0077 11 1 5.0936 -3.9909 -1.1613 12 1 5.1121 -3.7499 1.2520 13 1 3.0212 -3.5948 0.0341 14 6 4.1576 1.3206 -2.3513 15 8 3.9548 2.5156 -2.3055 16 6 4.6119 0.6822 -3.6386 17 6 4.7377 1.7542 -4.7230 18 6 5.1926 1.1159 -6.0101 19 7 6.2624 0.3875 -6.1434 20 6 6.3741 -0.0280 -7.4313 21 6 7.3073 -0.8135 -8.1131 22 6 7.1401 -1.0672 -9.4448 23 6 6.0532 -0.5473 -10.1335 24 6 5.1229 0.2345 -9.4827 25 6 5.2763 0.5030 -8.1292 26 7 4.5509 1.2271 -7.2045 27 1 3.7300 1.7158 -7.3727 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6888 1.8464 -0.8899 33 1 3.8509 0.5683 0.8426 34 1 3.9787 2.1763 0.0902 35 1 5.7352 -1.2377 1.4993 36 1 3.8828 -0.0657 -3.9504 37 1 5.5796 0.2044 -3.4856 38 1 5.4666 2.5024 -4.4114 39 1 3.7697 2.2316 -4.8759 40 1 8.1568 -1.2233 -7.5868 41 1 7.8609 -1.6787 -9.9671 42 1 5.9354 -0.7568 -11.1865 43 1 4.2785 0.6363 -10.0233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457185984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:41 Heat of formation + Delta-G solvation = -28.524346 kcal Electronic energy + Delta-G solvation = -26011.413780 eV Core-core repulsion = 22249.716808 eV Total energy + Delta-G solvation = -3761.696972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.11074 -40.57095 -38.62082 -38.27343 -36.62729 -34.43096 -34.03217 -33.49164 -31.18934 -30.88457 -29.65403 -27.30266 -26.84748 -25.93196 -23.57277 -23.24742 -22.86877 -21.57042 -20.85634 -18.86590 -18.69531 -18.11660 -17.88717 -17.16636 -16.92984 -16.51054 -16.32461 -16.15804 -15.95239 -15.78446 -15.46638 -15.20259 -14.82257 -14.66982 -14.21061 -13.72498 -13.61124 -13.34943 -13.12577 -12.94673 -12.87306 -12.82166 -12.55140 -12.46637 -12.42837 -12.35125 -12.09904 -12.04498 -11.76854 -11.67409 -10.98769 -10.91805 -10.53718 -10.31608 -9.44783 -9.31393 -9.08140 -8.25523 -5.94351 0.00329 0.59189 1.44087 1.49922 1.57516 1.75967 1.90356 2.03973 2.37246 2.91390 2.95803 3.03122 3.15075 3.25565 3.66348 4.06858 4.11097 4.19290 4.22394 4.27480 4.33838 4.45968 4.47069 4.53426 4.54643 4.55641 4.62952 4.63897 4.69688 4.80612 4.89054 4.92143 5.02548 5.14149 5.17215 5.39488 5.48413 5.54576 5.60139 5.61264 6.00561 6.01509 6.42552 6.42984 6.45411 6.93086 7.18967 7.62899 8.03424 8.77739 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.003292 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.857328 B = 8502.312493 C = 9383.679030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.065 3.935 4 C 0.109 3.891 5 N -0.437 5.437 6 C -0.335 4.335 7 H 0.089 0.911 8 C 0.011 3.989 9 N -0.891 5.891 10 Si 0.973 3.027 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.457 3.543 15 O -0.632 6.632 16 C -0.093 4.093 17 C -0.012 4.012 18 C 0.290 3.710 19 N -0.529 5.529 20 C 0.007 3.993 21 C -0.091 4.091 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.114 4.114 25 C 0.031 3.969 26 N -0.586 5.586 27 H 0.437 0.563 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.270 0.730 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 0.183 -16.590 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.013 4.013 4 C -0.014 4.014 5 N -0.154 5.154 6 C -0.463 4.463 7 H 0.106 0.894 8 C -0.191 4.191 9 N -0.529 5.529 10 Si 0.797 3.203 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.247 3.753 15 O -0.521 6.521 16 C -0.134 4.134 17 C -0.051 4.051 18 C 0.023 3.977 19 N -0.250 5.250 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.142 4.142 23 C -0.119 4.119 24 C -0.134 4.134 25 C -0.079 4.079 26 N -0.198 5.198 27 H 0.279 0.721 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.175 0.825 42 H 0.184 0.816 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.106 0.313 -15.724 16.254 hybrid contribution -0.995 -0.094 0.166 1.013 sum -5.101 0.219 -15.558 16.374 Atomic orbital electron populations 1.22881 0.80697 1.03226 1.00314 1.88073 1.20419 1.27907 1.95315 1.22804 0.94378 0.84541 0.99528 1.21448 0.91521 0.97855 0.90621 1.43549 1.56127 1.07487 1.08272 1.19446 1.42537 0.82471 1.01856 0.89374 1.25927 0.93463 1.03546 0.96192 1.69989 1.31920 1.38724 1.12295 0.85310 0.78654 0.78625 0.77686 1.19357 1.20771 1.19558 1.20852 0.80822 0.86194 0.87420 1.90475 1.58999 1.15945 1.86692 1.21052 1.02998 0.97934 0.91399 1.19782 1.03143 0.96510 0.85663 1.23594 0.89407 0.96183 0.88550 1.70395 1.19304 1.16528 1.18805 1.19652 0.98064 1.03335 0.90047 1.20306 0.97926 0.97649 0.95149 1.21030 0.99482 1.00927 0.92789 1.21361 0.93102 0.96084 1.01340 1.20381 1.02200 1.01752 0.89094 1.19265 0.95334 0.99690 0.93655 1.43007 1.25212 1.44337 1.07291 0.72136 0.94078 0.89025 0.92992 0.91636 0.94709 0.88473 0.92350 0.92011 0.89964 0.90005 0.89094 0.87916 0.85655 0.82454 0.81580 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.71 10.44 -148.98 -1.56 -18.27 16 3 C 0.06 2.68 6.24 71.98 0.45 3.13 16 4 C 0.11 5.35 5.29 86.38 0.46 5.80 16 5 N -0.44 -22.42 2.51 -635.54 -1.60 -24.02 16 6 C -0.34 -17.54 8.48 84.04 0.71 -16.82 16 7 H 0.09 4.49 6.98 -2.91 -0.02 4.47 16 8 C 0.01 0.59 4.93 84.93 0.42 1.01 16 9 N -0.89 -48.58 11.34 21.66 0.25 -48.34 16 10 Si 0.97 41.94 29.61 68.60 2.03 43.97 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.46 22.11 7.60 87.66 0.67 22.78 16 15 O -0.63 -31.95 15.65 -3.05 -0.05 -31.99 16 16 C -0.09 -3.81 4.30 29.85 0.13 -3.69 16 17 C -0.01 -0.39 5.13 29.85 0.15 -0.24 16 18 C 0.29 9.43 7.37 137.92 1.02 10.45 16 19 N -0.53 -19.85 11.21 -179.96 -2.02 -21.86 16 20 C 0.01 0.23 7.23 39.45 0.29 0.51 16 21 C -0.09 -2.41 10.05 22.25 0.22 -2.18 16 22 C -0.12 -2.26 9.96 22.01 0.22 -2.04 16 23 C -0.10 -1.56 10.03 22.31 0.22 -1.34 16 24 C -0.11 -2.13 10.07 22.32 0.22 -1.91 16 25 C 0.03 0.81 7.30 38.86 0.28 1.10 16 26 N -0.59 -14.80 6.23 -179.22 -1.12 -15.92 16 27 H 0.44 7.62 8.96 -92.71 -0.83 6.79 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 5.14 5.37 -2.39 -0.01 5.13 16 34 H 0.06 2.89 7.59 -2.38 -0.02 2.87 16 35 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.08 3.24 7.65 -2.38 -0.02 3.22 16 37 H 0.08 3.68 8.10 -2.39 -0.02 3.66 16 38 H 0.09 3.23 8.10 -2.38 -0.02 3.21 16 39 H 0.10 3.01 8.10 -2.39 -0.02 2.99 16 40 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -71.08 365.39 2.85 -68.23 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.20 Total: 29.65 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.71 Total: 18.56 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.48 Total: -110.14 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.60 Total: -50.26 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.08 2.85 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.701 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds