Wall clock time and date at job start Tue Mar 31 2020 11:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46869 * 65.00215 * 4 3 2 6 6 C 1.36881 * 120.00131 * 279.25198 * 5 4 3 7 7 H 1.08004 * 119.99539 * 36.76840 * 6 5 4 8 8 C 1.39041 * 119.99921 * 216.77408 * 6 5 4 9 9 N 1.31362 * 120.00714 * 25.78072 * 8 6 5 10 10 Si 1.86801 * 119.99462 * 205.78038 * 8 6 5 11 11 H 1.48497 * 109.47667 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47008 * 120.00147 * 10 8 6 13 13 H 1.48504 * 109.47205 * 239.99685 * 10 8 6 14 14 C 1.34775 * 120.00145 * 99.25231 * 5 4 3 15 15 O 1.21585 * 120.00089 * 186.85955 * 14 5 4 16 16 C 1.47765 * 119.99837 * 6.86010 * 14 5 4 17 17 C 1.39416 * 120.03896 * 331.28758 * 16 14 5 18 18 C 1.39360 * 119.84595 * 180.02562 * 17 16 14 19 19 C 1.43201 * 120.03365 * 180.02562 * 18 17 16 20 20 N 6.27640 * 101.02708 * 7.27231 * 2 1 3 21 21 C 1.39650 * 119.92150 * 359.97438 * 18 17 16 22 22 C 1.38726 * 120.08305 * 0.02562 * 21 18 17 23 23 N 1.39732 * 119.92671 * 180.02562 * 22 21 18 24 24 C 1.46507 * 120.00358 * 179.97438 * 23 22 21 25 25 C 1.46507 * 120.00158 * 359.97438 * 23 22 21 26 26 C 1.38755 * 120.14840 * 359.97438 * 22 21 18 27 27 H 1.08999 * 109.47124 * 300.00664 * 1 2 3 28 28 H 1.09006 * 109.46804 * 59.99698 * 1 2 3 29 29 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47327 * 60.00001 * 3 2 1 31 31 H 1.08997 * 109.47427 * 299.99929 * 3 2 1 32 32 H 1.08997 * 109.47295 * 305.00174 * 4 3 2 33 33 H 1.08999 * 109.47090 * 185.00312 * 4 3 2 34 34 H 0.96997 * 120.00405 * 184.98765 * 9 8 6 35 35 H 1.08006 * 120.07408 * 0.04649 * 17 16 14 36 36 H 1.08008 * 119.95612 * 180.02562 * 21 18 17 37 37 H 1.08992 * 109.47231 * 89.99330 * 24 23 22 38 38 H 1.09001 * 109.47191 * 210.00170 * 24 23 22 39 39 H 1.09004 * 109.46591 * 329.99342 * 24 23 22 40 40 H 1.09006 * 109.46707 * 59.99803 * 25 23 22 41 41 H 1.08994 * 109.47424 * 180.02562 * 25 23 22 42 42 H 1.09000 * 109.46906 * 299.99969 * 25 23 22 43 43 H 1.08003 * 119.96120 * 179.72897 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9176 -0.7956 -1.3987 7 1 3.0961 -1.3501 -0.9697 8 6 4.9153 -1.4625 -2.1009 9 7 6.1190 -0.9432 -2.1847 10 14 4.5438 -3.0971 -2.9252 11 1 3.1249 -3.4625 -2.6834 12 1 4.7833 -2.9805 -4.3861 13 1 5.4281 -4.1483 -2.3611 14 6 4.4407 1.3316 -2.2568 15 8 4.6891 0.8327 -3.3374 16 6 4.6475 2.7795 -2.0464 17 6 3.8660 3.4687 -1.1202 18 6 4.0641 4.8343 -0.9254 19 6 3.2640 5.5462 0.0253 20 7 2.6295 6.1110 0.7798 21 6 5.0445 5.5075 -1.6575 22 6 5.8204 4.8185 -2.5783 23 7 6.8008 5.4952 -3.3087 24 6 7.6215 4.7691 -4.2812 25 6 7.0080 6.9307 -3.1021 26 6 5.6258 3.4588 -2.7748 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0903 34 1 6.7945 -1.3709 -2.7339 35 1 3.1090 2.9455 -0.5549 36 1 5.1988 6.5658 -1.5066 37 1 7.1363 4.7941 -5.2568 38 1 8.6027 5.2388 -4.3511 39 1 7.7364 3.7342 -3.9588 40 1 7.2816 7.1124 -2.0627 41 1 7.8077 7.2801 -3.7551 42 1 6.0885 7.4677 -3.3350 43 1 6.2286 2.9263 -3.4956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:17 Heat of formation + Delta-G solvation = 42.740656 kcal Electronic energy + Delta-G solvation = -27028.604433 eV Core-core repulsion = 23269.997744 eV Total energy + Delta-G solvation = -3758.606690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.06894 -38.36805 -37.11577 -36.86752 -35.46733 -34.31716 -32.30943 -31.05311 -30.07612 -28.95692 -28.32704 -26.06283 -24.96057 -24.69279 -23.23685 -22.58100 -21.44413 -19.84186 -17.95258 -16.65170 -16.60783 -16.25752 -15.80287 -15.77472 -15.24836 -15.07948 -14.79420 -14.71200 -14.23943 -14.00374 -13.84901 -13.55974 -13.21861 -13.12739 -12.75231 -12.65482 -12.48779 -12.38369 -12.19788 -12.00327 -11.88877 -11.64218 -11.35902 -11.34827 -10.94714 -10.88075 -10.73567 -10.48625 -10.39636 -10.11742 -9.50059 -9.20962 -8.76515 -8.58396 -8.15194 -7.23595 -7.15534 -6.14817 -3.73258 1.00071 1.54753 2.72667 3.09212 3.14051 3.37203 3.47589 3.49937 3.90801 4.03386 4.24597 4.29866 4.65054 4.83069 4.94940 5.12201 5.13210 5.26404 5.31687 5.33260 5.43677 5.51571 5.55134 5.56052 5.62173 5.65304 5.73891 5.77684 5.79566 5.85431 5.89923 5.94695 6.02857 6.11956 6.35204 6.42332 6.60542 6.73893 6.86644 7.25812 7.50644 7.57270 7.64307 7.76168 8.28132 9.01346 9.20127 9.65155 10.24427 10.93309 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.005407 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.330341 B = 5176.815002 C = 7405.448783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.044 3.956 4 C 0.063 3.937 5 N -0.424 5.424 6 C -0.326 4.326 7 H 0.098 0.902 8 C 0.070 3.930 9 N -0.824 5.824 10 Si 0.905 3.095 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.288 1.288 14 C 0.495 3.505 15 O -0.538 6.538 16 C -0.044 4.044 17 C -0.143 4.143 18 C 0.000 4.000 19 C 0.267 3.733 20 N -0.433 5.433 21 C -0.151 4.151 22 C 0.204 3.796 23 N -0.639 5.639 24 C 0.092 3.908 25 C 0.098 3.902 26 C -0.115 4.115 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.126 0.874 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 12.243 0.337 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.034 4.034 4 C -0.061 4.061 5 N -0.143 5.143 6 C -0.452 4.452 7 H 0.115 0.885 8 C -0.140 4.140 9 N -0.458 5.458 10 Si 0.732 3.268 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.215 1.215 14 C 0.283 3.717 15 O -0.418 6.418 16 C -0.049 4.049 17 C -0.166 4.166 18 C -0.004 4.004 19 C -0.048 4.048 20 N -0.108 5.108 21 C -0.177 4.177 22 C 0.103 3.897 23 N -0.352 5.352 24 C -0.051 4.051 25 C -0.046 4.046 26 C -0.139 4.139 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.174 0.826 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.564 12.694 0.847 12.735 hybrid contribution 0.035 -0.599 -0.686 0.911 sum -0.530 12.095 0.162 12.108 Atomic orbital electron populations 1.22693 0.82729 1.02213 0.99085 1.88121 1.18044 1.26805 1.95060 1.23109 0.95728 0.85464 0.99122 1.22602 0.91510 1.00716 0.91272 1.43188 1.55984 1.06167 1.08995 1.19361 1.07043 0.80435 1.38342 0.88456 1.25122 0.93239 0.98293 0.97395 1.69932 1.01608 1.41011 1.33284 0.86272 0.78596 0.82220 0.79755 1.19406 1.20720 1.21488 1.17577 0.85229 0.83681 0.85181 1.90600 1.53337 1.73106 1.24735 1.20223 0.94484 0.96119 0.94100 1.22198 1.02769 0.91907 0.99678 1.15570 0.96555 0.92218 0.96033 1.25785 0.93022 0.93018 0.92960 1.81209 1.09970 1.09097 1.10545 1.20451 0.98314 0.99539 0.99396 1.17428 0.89480 0.91078 0.91672 1.46233 1.37857 1.07762 1.43384 1.21707 0.93856 0.97989 0.91589 1.21572 1.01176 0.80574 1.01247 1.21014 0.99485 0.91569 1.01832 0.94967 0.94568 0.90068 0.93687 0.93318 0.90529 0.87475 0.92554 0.82613 0.85625 0.93312 0.91728 0.90621 0.92923 0.91005 0.92957 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.36 -6.81 8.97 -35.23 -0.32 -7.13 16 3 C 0.04 0.74 5.09 37.16 0.19 0.93 16 4 C 0.06 1.22 5.32 -4.04 -0.02 1.19 16 5 N -0.42 -10.36 2.57 -115.91 -0.30 -10.66 16 6 C -0.33 -8.82 8.83 -15.00 -0.13 -8.96 16 7 H 0.10 2.63 6.69 -52.48 -0.35 2.28 16 8 C 0.07 1.94 4.13 -17.46 -0.07 1.87 16 9 N -0.82 -23.76 11.85 55.50 0.66 -23.10 16 10 Si 0.90 21.90 29.63 -169.99 -5.04 16.86 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.49 12.25 6.66 -12.37 -0.08 12.17 16 15 O -0.54 -15.41 14.41 5.29 0.08 -15.33 16 16 C -0.04 -0.87 5.62 -105.05 -0.59 -1.46 16 17 C -0.14 -2.34 7.22 -38.73 -0.28 -2.62 16 18 C 0.00 0.00 5.72 -107.03 -0.61 -0.61 16 19 C 0.27 3.82 15.32 -22.47 -0.34 3.48 16 20 N -0.43 -6.74 18.54 41.84 0.78 -5.96 16 21 C -0.15 -2.00 9.01 -38.87 -0.35 -2.35 16 22 C 0.20 2.93 6.54 -83.89 -0.55 2.39 16 23 N -0.64 -7.54 3.41 -187.63 -0.64 -8.18 16 24 C 0.09 0.97 10.15 59.85 0.61 1.58 16 25 C 0.10 0.82 9.39 59.85 0.56 1.38 16 26 C -0.12 -2.03 8.75 -38.88 -0.34 -2.37 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.83 7.41 -51.93 -0.38 0.44 16 32 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 33 H 0.11 1.85 3.83 -55.00 -0.21 1.64 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.16 2.47 2.69 -52.48 -0.14 2.33 16 36 H 0.13 1.36 6.70 -52.48 -0.35 1.01 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 7.92 -51.93 -0.41 0.11 16 39 H 0.08 0.92 6.19 -51.93 -0.32 0.60 16 40 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 41 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 42 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 43 H 0.14 2.59 5.95 -52.48 -0.31 2.28 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -33.47 357.66 -5.68 -39.14 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.38 Total: 0.80 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -0.90 Total: 8.16 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.50 Total: -47.90 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.24 Total: -22.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.47 -5.68 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.884 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds