Wall clock time and date at job start Tue Mar 31 2020 11:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46869 * 65.00215 * 4 3 2 6 6 C 1.36881 * 120.00131 * 279.25198 * 5 4 3 7 7 H 1.08004 * 119.99539 * 36.76840 * 6 5 4 8 8 C 1.39041 * 119.99921 * 216.77408 * 6 5 4 9 9 N 1.31362 * 120.00714 * 25.78072 * 8 6 5 10 10 Si 1.86801 * 119.99462 * 205.78038 * 8 6 5 11 11 H 1.48497 * 109.47667 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47008 * 120.00147 * 10 8 6 13 13 H 1.48504 * 109.47205 * 239.99685 * 10 8 6 14 14 C 1.34775 * 120.00145 * 99.25231 * 5 4 3 15 15 O 1.21585 * 120.00089 * 186.85955 * 14 5 4 16 16 C 1.47765 * 119.99837 * 6.86010 * 14 5 4 17 17 C 1.39416 * 120.03896 * 331.28758 * 16 14 5 18 18 C 1.39360 * 119.84595 * 180.02562 * 17 16 14 19 19 C 1.43201 * 120.03365 * 180.02562 * 18 17 16 20 20 N 6.27640 * 101.02708 * 7.27231 * 2 1 3 21 21 C 1.39650 * 119.92150 * 359.97438 * 18 17 16 22 22 C 1.38726 * 120.08305 * 0.02562 * 21 18 17 23 23 N 1.39732 * 119.92671 * 180.02562 * 22 21 18 24 24 C 1.46507 * 120.00358 * 179.97438 * 23 22 21 25 25 C 1.46507 * 120.00158 * 359.97438 * 23 22 21 26 26 C 1.38755 * 120.14840 * 359.97438 * 22 21 18 27 27 H 1.08999 * 109.47124 * 300.00664 * 1 2 3 28 28 H 1.09006 * 109.46804 * 59.99698 * 1 2 3 29 29 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47327 * 60.00001 * 3 2 1 31 31 H 1.08997 * 109.47427 * 299.99929 * 3 2 1 32 32 H 1.08997 * 109.47295 * 305.00174 * 4 3 2 33 33 H 1.08999 * 109.47090 * 185.00312 * 4 3 2 34 34 H 0.96997 * 120.00405 * 184.98765 * 9 8 6 35 35 H 1.08006 * 120.07408 * 0.04649 * 17 16 14 36 36 H 1.08008 * 119.95612 * 180.02562 * 21 18 17 37 37 H 1.08992 * 109.47231 * 89.99330 * 24 23 22 38 38 H 1.09001 * 109.47191 * 210.00170 * 24 23 22 39 39 H 1.09004 * 109.46591 * 329.99342 * 24 23 22 40 40 H 1.09006 * 109.46707 * 59.99803 * 25 23 22 41 41 H 1.08994 * 109.47424 * 180.02562 * 25 23 22 42 42 H 1.09000 * 109.46906 * 299.99969 * 25 23 22 43 43 H 1.08003 * 119.96120 * 179.72897 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9176 -0.7956 -1.3987 7 1 3.0961 -1.3501 -0.9697 8 6 4.9153 -1.4625 -2.1009 9 7 6.1190 -0.9432 -2.1847 10 14 4.5438 -3.0971 -2.9252 11 1 3.1249 -3.4625 -2.6834 12 1 4.7833 -2.9805 -4.3861 13 1 5.4281 -4.1483 -2.3611 14 6 4.4407 1.3316 -2.2568 15 8 4.6891 0.8327 -3.3374 16 6 4.6475 2.7795 -2.0464 17 6 3.8660 3.4687 -1.1202 18 6 4.0641 4.8343 -0.9254 19 6 3.2640 5.5462 0.0253 20 7 2.6295 6.1110 0.7798 21 6 5.0445 5.5075 -1.6575 22 6 5.8204 4.8185 -2.5783 23 7 6.8008 5.4952 -3.3087 24 6 7.6215 4.7691 -4.2812 25 6 7.0080 6.9307 -3.1021 26 6 5.6258 3.4588 -2.7748 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0903 34 1 6.7945 -1.3709 -2.7339 35 1 3.1090 2.9455 -0.5549 36 1 5.1988 6.5658 -1.5066 37 1 7.1363 4.7941 -5.2568 38 1 8.6027 5.2388 -4.3511 39 1 7.7364 3.7342 -3.9588 40 1 7.2816 7.1124 -2.0627 41 1 7.8077 7.2801 -3.7551 42 1 6.0885 7.4677 -3.3350 43 1 6.2286 2.9263 -3.4956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:16 Heat of formation + Delta-G solvation = 21.184096 kcal Electronic energy + Delta-G solvation = -27029.539196 eV Core-core repulsion = 23269.997744 eV Total energy + Delta-G solvation = -3759.541452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.48625 -39.81855 -38.58589 -38.00313 -36.69986 -36.10513 -34.15745 -32.39012 -31.45430 -30.42872 -29.20690 -27.35025 -26.71365 -25.73068 -24.59929 -24.00450 -22.89192 -21.33102 -19.37418 -18.36877 -17.96889 -17.57965 -17.25108 -17.00590 -16.52632 -16.41354 -16.16516 -15.96448 -15.71996 -15.65148 -15.07193 -14.89075 -14.78011 -14.32860 -14.21418 -13.76517 -13.65513 -13.40160 -13.37422 -13.15954 -13.10735 -13.04243 -12.92933 -12.75700 -12.67727 -12.49297 -12.14635 -12.09006 -12.04633 -11.73766 -10.78671 -10.69662 -10.47323 -10.16009 -9.86200 -9.15475 -8.26366 -8.20651 -5.82892 -0.25060 0.24309 1.40315 1.47877 1.56625 1.57840 1.85838 2.16540 2.36743 2.52956 2.83093 2.94752 2.98195 3.20000 3.37057 3.82789 4.02622 4.09977 4.20080 4.24597 4.29867 4.31959 4.40047 4.50307 4.54268 4.59082 4.61518 4.61708 4.69092 4.76481 4.84698 4.88551 4.95512 4.99149 5.06112 5.12385 5.19715 5.43135 5.55860 5.66203 6.27973 6.30439 6.40497 6.41751 6.46059 7.03070 7.24443 7.70694 8.33215 8.87314 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.005407 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.330341 B = 5176.815002 C = 7405.448783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.048 3.952 4 C 0.060 3.940 5 N -0.441 5.441 6 C -0.340 4.340 7 H 0.092 0.908 8 C 0.023 3.977 9 N -0.861 5.861 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.294 1.294 13 H -0.276 1.276 14 C 0.490 3.510 15 O -0.591 6.591 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.015 3.985 19 C 0.286 3.714 20 N -0.445 5.445 21 C -0.127 4.127 22 C 0.213 3.787 23 N -0.638 5.638 24 C 0.088 3.912 25 C 0.088 3.912 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.259 0.741 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 15.510 1.269 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.062 4.062 5 N -0.160 5.160 6 C -0.467 4.467 7 H 0.109 0.891 8 C -0.183 4.183 9 N -0.498 5.498 10 Si 0.783 3.217 11 H -0.185 1.185 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.280 3.720 15 O -0.474 6.474 16 C -0.073 4.073 17 C -0.164 4.164 18 C 0.011 3.989 19 C -0.029 4.029 20 N -0.121 5.121 21 C -0.153 4.153 22 C 0.110 3.890 23 N -0.350 5.350 24 C -0.055 4.055 25 C -0.053 4.053 26 C -0.155 4.155 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.083 15.992 1.811 16.131 hybrid contribution 0.191 -1.380 -0.994 1.711 sum -0.892 14.613 0.817 14.663 Atomic orbital electron populations 1.22887 0.80499 1.03302 1.00458 1.88059 1.20610 1.27881 1.95371 1.23060 0.93753 0.85340 1.00756 1.22832 0.93513 1.01245 0.88630 1.43346 1.56302 1.05599 1.10704 1.19455 1.06604 0.82011 1.38627 0.89073 1.25863 0.93218 1.01156 0.98063 1.70008 1.02287 1.42767 1.34690 0.85451 0.78910 0.79389 0.77910 1.18533 1.22098 1.20199 1.18387 0.83347 0.85820 0.84448 1.90539 1.55115 1.74939 1.26828 1.19769 0.97149 0.93401 0.97019 1.22006 1.02433 0.92849 0.99122 1.15433 0.96491 0.91176 0.95784 1.25456 0.92512 0.92512 0.92440 1.81255 1.10263 1.09663 1.10871 1.20794 0.96278 1.00983 0.97222 1.17400 0.90002 0.89793 0.91821 1.46542 1.36627 1.09283 1.42499 1.21792 0.95345 0.97054 0.91327 1.21883 1.02758 0.78038 1.02665 1.20885 0.99558 0.93247 1.01805 0.92377 0.94262 0.89294 0.89902 0.93487 0.91423 0.85311 0.93124 0.82170 0.81967 0.93013 0.88631 0.93103 0.91774 0.88659 0.91783 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -14.92 8.97 -148.98 -1.34 -16.26 16 3 C 0.05 1.59 5.09 71.98 0.37 1.96 16 4 C 0.06 2.35 5.32 86.38 0.46 2.81 16 5 N -0.44 -22.35 2.57 -638.90 -1.64 -23.99 16 6 C -0.34 -19.21 8.83 84.10 0.74 -18.47 16 7 H 0.09 5.12 6.69 -2.91 -0.02 5.11 16 8 C 0.02 1.35 4.13 84.96 0.35 1.70 16 9 N -0.86 -52.38 11.85 21.68 0.26 -52.12 16 10 Si 0.96 46.89 29.63 68.60 2.03 48.92 16 11 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.49 25.43 6.66 86.76 0.58 26.00 16 15 O -0.59 -35.97 14.41 -3.98 -0.06 -36.03 16 16 C -0.07 -2.76 5.62 -20.14 -0.11 -2.87 16 17 C -0.14 -4.46 7.22 22.82 0.16 -4.29 16 18 C 0.02 0.39 5.72 -21.42 -0.12 0.27 16 19 C 0.29 7.12 15.32 88.33 1.35 8.48 16 20 N -0.44 -12.29 18.54 19.01 0.35 -11.94 16 21 C -0.13 -2.87 9.01 22.73 0.20 -2.67 16 22 C 0.21 5.69 6.54 38.12 0.25 5.94 16 23 N -0.64 -13.29 3.41 -747.53 -2.55 -15.84 16 24 C 0.09 1.74 10.15 127.77 1.30 3.04 16 25 C 0.09 1.08 9.39 127.77 1.20 2.28 16 26 C -0.13 -4.70 8.75 22.73 0.20 -4.50 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.56 7.41 -2.39 -0.02 1.54 16 32 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 33 H 0.13 4.38 3.83 -5.27 -0.02 4.36 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.16 4.85 2.69 -2.91 -0.01 4.85 16 36 H 0.16 2.56 6.70 -2.91 -0.02 2.54 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.30 7.92 -2.39 -0.02 1.28 16 39 H 0.05 1.28 6.19 -2.39 -0.01 1.26 16 40 H 0.06 0.69 7.94 -2.38 -0.02 0.67 16 41 H 0.09 0.76 7.79 -2.39 -0.02 0.75 16 42 H 0.06 0.68 7.94 -2.39 -0.02 0.66 16 43 H 0.12 4.65 5.95 -2.91 -0.02 4.63 16 Total: -1.00 -77.45 357.66 6.27 -71.17 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.04 Total: 14.50 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 8.18 Total: 21.60 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.58 Total: -103.90 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.39 Total: -52.29 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.45 6.27 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.355 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds