Wall clock time and date at job start Tue Mar 31 2020 11:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99647 * 2 1 4 4 C 1.53005 * 109.46597 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47518 * 65.00169 * 4 3 2 6 6 C 1.36934 * 119.99981 * 272.24016 * 5 4 3 7 7 H 1.08001 * 120.00485 * 141.55206 * 6 5 4 8 8 C 1.38816 * 119.99766 * 321.54781 * 6 5 4 9 9 N 1.31620 * 119.99936 * 338.93168 * 8 6 5 10 10 Si 1.86802 * 120.00184 * 158.93430 * 8 6 5 11 11 H 1.48510 * 109.46896 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47210 * 119.99701 * 10 8 6 13 13 H 1.48491 * 109.47067 * 240.00000 * 10 8 6 14 14 C 1.46502 * 119.99761 * 92.23411 * 5 4 3 15 15 C 1.53008 * 109.46925 * 269.99972 * 14 5 4 16 16 C 1.50697 * 109.46657 * 180.02562 * 15 14 5 17 17 O 1.21277 * 120.00413 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.39406 * 120.00252 * 185.41415 * 18 16 15 20 20 C 1.38790 * 120.16112 * 20.37044 * 19 18 16 21 21 C 1.38069 * 120.07460 * 179.97438 * 20 19 18 22 22 C 1.38540 * 120.40759 * 0.02562 * 21 20 19 23 23 C 1.37824 * 120.32289 * 359.97438 * 22 21 20 24 24 C 1.39694 * 119.91840 * 359.97438 * 23 22 21 25 25 C 1.43207 * 120.19785 * 179.97438 * 24 23 22 26 26 N 7.96963 * 75.83834 * 304.22819 * 2 1 3 27 27 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46977 * 299.99259 * 1 2 3 29 29 H 1.08996 * 109.47401 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47068 * 60.00275 * 3 2 1 31 31 H 1.08998 * 109.47469 * 299.99765 * 3 2 1 32 32 H 1.09002 * 109.46739 * 304.99708 * 4 3 2 33 33 H 1.09003 * 109.46896 * 185.00538 * 4 3 2 34 34 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.46424 * 150.00436 * 14 5 4 36 36 H 1.08996 * 109.47314 * 29.99957 * 14 5 4 37 37 H 1.09003 * 109.46935 * 60.00582 * 15 14 5 38 38 H 1.08997 * 109.46953 * 300.00638 * 15 14 5 39 39 H 0.97008 * 119.99827 * 5.40832 * 18 16 15 40 40 H 1.08000 * 119.96376 * 0.26605 * 20 19 18 41 41 H 1.08004 * 119.79461 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.83574 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.04079 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0528 -0.7992 -1.3513 7 1 3.7625 -1.2917 -2.2676 8 6 4.5041 -1.5485 -0.2734 9 7 5.2328 -0.9804 0.6639 10 14 4.0773 -3.3632 -0.1533 11 1 3.2533 -3.7564 -1.3246 12 1 5.3268 -4.1654 -0.1348 13 1 3.3120 -3.6100 1.0950 14 6 4.3334 1.4031 -2.3994 15 6 3.0910 1.6509 -3.2574 16 6 3.4592 2.5131 -4.4372 17 8 4.6026 2.8918 -4.5783 18 7 2.5176 2.8635 -5.3357 19 6 2.8778 3.5650 -6.4852 20 6 4.1917 3.5441 -6.9319 21 6 4.5464 4.2391 -8.0710 22 6 3.5973 4.9616 -8.7757 23 6 2.2878 4.9937 -8.3470 24 6 1.9138 4.2946 -7.1969 25 6 0.5549 4.3244 -6.7457 26 7 -0.5208 4.3466 -6.3891 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 5.5479 -1.5040 1.4173 35 1 5.0924 0.8976 -2.9965 36 1 4.7257 2.3561 -2.0443 37 1 2.3320 2.1564 -2.6602 38 1 2.6988 0.6979 -3.6124 39 1 1.5893 2.6274 -5.1824 40 1 4.9366 2.9798 -6.3906 41 1 5.5701 4.2194 -8.4148 42 1 3.8849 5.5022 -9.6652 43 1 1.5515 5.5581 -8.9001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459535393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:39 Heat of formation + Delta-G solvation = 6.181857 kcal Electronic energy + Delta-G solvation = -25962.283583 eV Core-core repulsion = 22202.091585 eV Total energy + Delta-G solvation = -3760.191998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89393 -38.84195 -37.27166 -36.68789 -35.48681 -34.94430 -32.10131 -31.53678 -30.70491 -29.64302 -28.12095 -25.68650 -24.75538 -24.11848 -23.32178 -21.99991 -20.44820 -20.04829 -19.28734 -17.60266 -17.17982 -16.66203 -15.81204 -15.58195 -15.45122 -15.06266 -15.01943 -14.61272 -14.31580 -14.28899 -14.06077 -13.76355 -13.53807 -13.36882 -13.14103 -12.95778 -12.77952 -12.38764 -12.01313 -11.98468 -11.85094 -11.74505 -11.17114 -10.91445 -10.83063 -10.77890 -10.68012 -10.50344 -9.97960 -9.89038 -9.75761 -9.63072 -9.20113 -8.82482 -8.40053 -8.33016 -6.55524 -5.71335 -3.30035 0.50016 1.06472 2.38148 2.58684 2.76280 2.84481 3.44341 3.52147 3.54831 3.61278 3.67270 4.48572 4.54838 4.66033 4.68755 4.85088 5.02731 5.17829 5.19436 5.39139 5.54318 5.59240 5.64585 5.71449 5.73455 5.78476 5.91034 5.96832 6.02603 6.09801 6.14255 6.24860 6.26515 6.29854 6.53683 6.66274 6.68932 6.70899 7.01195 7.12148 7.25425 7.64054 7.88765 8.02662 8.04924 8.59502 9.23277 9.86962 10.41742 11.30521 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.003169 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.455912 B = 8834.049804 C = 9750.422881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.046 3.954 4 C 0.140 3.860 5 N -0.574 5.574 6 C -0.246 4.246 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.890 5.890 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.163 3.837 15 C -0.161 4.161 16 C 0.520 3.480 17 O -0.508 6.508 18 N -0.678 5.678 19 C 0.212 3.788 20 C -0.145 4.145 21 C -0.064 4.064 22 C -0.151 4.151 23 C -0.048 4.048 24 C -0.081 4.081 25 C 0.254 3.746 26 N -0.419 5.419 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.411 0.589 40 H 0.166 0.834 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 11.048 -14.797 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C -0.034 4.034 4 C 0.013 3.987 5 N -0.293 5.293 6 C -0.376 4.376 7 H 0.074 0.926 8 C -0.178 4.178 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.215 1.215 14 C 0.035 3.965 15 C -0.203 4.203 16 C 0.310 3.690 17 O -0.382 6.382 18 N -0.321 5.321 19 C 0.112 3.888 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.170 4.170 23 C -0.069 4.069 24 C -0.088 4.088 25 C -0.060 4.060 26 N -0.094 5.094 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.183 0.817 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.959 11.013 -14.055 18.824 hybrid contribution -0.930 -0.711 0.029 1.170 sum -6.888 10.303 -14.026 18.717 Atomic orbital electron populations 1.22641 0.84362 1.01499 0.98366 1.88241 1.16402 1.27570 1.94788 1.23501 0.98955 0.84152 0.96744 1.21079 0.87470 0.96721 0.93394 1.43688 1.74801 1.02590 1.08195 1.18830 1.37378 0.81127 1.00262 0.92564 1.25060 0.96170 0.97706 0.98827 1.69981 1.34420 1.35898 1.12984 0.86312 0.77530 0.85501 0.77766 1.20253 1.22113 1.21530 1.20610 0.91322 0.95074 0.89520 1.22729 1.05032 0.98792 0.93786 1.21677 0.84643 0.79393 0.83295 1.90596 1.19927 1.52797 1.74847 1.43986 1.12804 1.55344 1.19944 1.17885 0.93494 0.91194 0.86232 1.21743 0.95349 1.02132 0.97296 1.21373 0.99892 0.93885 0.93181 1.21031 0.92573 1.02042 1.01370 1.20935 0.96860 0.95888 0.93236 1.15744 0.85618 1.06641 1.00767 1.25541 0.92709 0.93995 0.93800 1.81189 1.11656 1.08389 1.08203 0.90710 0.95521 0.95410 0.95765 0.95560 0.87962 0.93989 0.93752 0.92228 0.93930 0.89510 0.88425 0.75293 0.81702 0.84902 0.85075 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.53 10.07 -35.23 -0.35 -7.88 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.16 5.80 -4.04 -0.02 3.13 16 5 N -0.57 -13.59 2.41 -173.23 -0.42 -14.01 16 6 C -0.25 -6.54 8.84 -15.06 -0.13 -6.67 16 7 H 0.06 1.50 7.91 -52.49 -0.42 1.09 16 8 C 0.02 0.61 4.98 -17.43 -0.09 0.53 16 9 N -0.89 -25.45 11.48 55.49 0.64 -24.82 16 10 Si 0.90 21.99 29.60 -169.99 -5.03 16.95 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.16 3.28 5.00 -4.04 -0.02 3.26 16 15 C -0.16 -2.56 6.01 -27.88 -0.17 -2.73 16 16 C 0.52 7.58 7.67 -10.99 -0.08 7.50 16 17 O -0.51 -8.52 12.90 5.56 0.07 -8.45 16 18 N -0.68 -8.13 5.21 -9.67 -0.05 -8.18 16 19 C 0.21 2.40 6.50 -83.44 -0.54 1.86 16 20 C -0.15 -1.60 8.76 -39.44 -0.35 -1.95 16 21 C -0.06 -0.52 10.03 -39.53 -0.40 -0.92 16 22 C -0.15 -1.03 10.02 -39.62 -0.40 -1.43 16 23 C -0.05 -0.36 9.75 -39.19 -0.38 -0.75 16 24 C -0.08 -0.80 5.75 -106.65 -0.61 -1.41 16 25 C 0.25 2.85 14.20 -22.55 -0.32 2.53 16 26 N -0.42 -5.49 18.52 41.74 0.77 -4.71 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.03 0.47 6.28 -51.93 -0.33 0.14 16 32 H 0.10 2.69 5.55 -51.93 -0.29 2.40 16 33 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.06 1.28 8.00 -51.93 -0.42 0.87 16 36 H 0.04 0.85 7.83 -51.93 -0.41 0.44 16 37 H 0.09 1.32 6.30 -51.93 -0.33 0.99 16 38 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.41 4.35 7.80 -40.82 -0.32 4.03 16 40 H 0.17 2.14 5.47 -52.49 -0.29 1.85 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -31.48 368.31 -6.70 -38.18 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.71 Total: 1.71 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.17 Total: 5.66 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.94 Total: -51.72 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.28 Total: -16.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.48 -6.70 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459535393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.362 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds