Wall clock time and date at job start Tue Mar 31 2020 11:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99647 * 2 1 4 4 C 1.53005 * 109.46597 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47518 * 65.00169 * 4 3 2 6 6 C 1.36934 * 119.99981 * 272.24016 * 5 4 3 7 7 H 1.08001 * 120.00485 * 141.55206 * 6 5 4 8 8 C 1.38816 * 119.99766 * 321.54781 * 6 5 4 9 9 N 1.31620 * 119.99936 * 338.93168 * 8 6 5 10 10 Si 1.86802 * 120.00184 * 158.93430 * 8 6 5 11 11 H 1.48510 * 109.46896 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47210 * 119.99701 * 10 8 6 13 13 H 1.48491 * 109.47067 * 240.00000 * 10 8 6 14 14 C 1.46502 * 119.99761 * 92.23411 * 5 4 3 15 15 C 1.53008 * 109.46925 * 269.99972 * 14 5 4 16 16 C 1.50697 * 109.46657 * 180.02562 * 15 14 5 17 17 O 1.21277 * 120.00413 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.39406 * 120.00252 * 185.41415 * 18 16 15 20 20 C 1.38790 * 120.16112 * 20.37044 * 19 18 16 21 21 C 1.38069 * 120.07460 * 179.97438 * 20 19 18 22 22 C 1.38540 * 120.40759 * 0.02562 * 21 20 19 23 23 C 1.37824 * 120.32289 * 359.97438 * 22 21 20 24 24 C 1.39694 * 119.91840 * 359.97438 * 23 22 21 25 25 C 1.43207 * 120.19785 * 179.97438 * 24 23 22 26 26 N 7.96963 * 75.83834 * 304.22819 * 2 1 3 27 27 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46977 * 299.99259 * 1 2 3 29 29 H 1.08996 * 109.47401 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47068 * 60.00275 * 3 2 1 31 31 H 1.08998 * 109.47469 * 299.99765 * 3 2 1 32 32 H 1.09002 * 109.46739 * 304.99708 * 4 3 2 33 33 H 1.09003 * 109.46896 * 185.00538 * 4 3 2 34 34 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.46424 * 150.00436 * 14 5 4 36 36 H 1.08996 * 109.47314 * 29.99957 * 14 5 4 37 37 H 1.09003 * 109.46935 * 60.00582 * 15 14 5 38 38 H 1.08997 * 109.46953 * 300.00638 * 15 14 5 39 39 H 0.97008 * 119.99827 * 5.40832 * 18 16 15 40 40 H 1.08000 * 119.96376 * 0.26605 * 20 19 18 41 41 H 1.08004 * 119.79461 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.83574 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.04079 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0528 -0.7992 -1.3513 7 1 3.7625 -1.2917 -2.2676 8 6 4.5041 -1.5485 -0.2734 9 7 5.2328 -0.9804 0.6639 10 14 4.0773 -3.3632 -0.1533 11 1 3.2533 -3.7564 -1.3246 12 1 5.3268 -4.1654 -0.1348 13 1 3.3120 -3.6100 1.0950 14 6 4.3334 1.4031 -2.3994 15 6 3.0910 1.6509 -3.2574 16 6 3.4592 2.5131 -4.4372 17 8 4.6026 2.8918 -4.5783 18 7 2.5176 2.8635 -5.3357 19 6 2.8778 3.5650 -6.4852 20 6 4.1917 3.5441 -6.9319 21 6 4.5464 4.2391 -8.0710 22 6 3.5973 4.9616 -8.7757 23 6 2.2878 4.9937 -8.3470 24 6 1.9138 4.2946 -7.1969 25 6 0.5549 4.3244 -6.7457 26 7 -0.5208 4.3466 -6.3891 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 5.5479 -1.5040 1.4173 35 1 5.0924 0.8976 -2.9965 36 1 4.7257 2.3561 -2.0443 37 1 2.3320 2.1564 -2.6602 38 1 2.6988 0.6979 -3.6124 39 1 1.5893 2.6274 -5.1824 40 1 4.9366 2.9798 -6.3906 41 1 5.5701 4.2194 -8.4148 42 1 3.8849 5.5022 -9.6652 43 1 1.5515 5.5581 -8.9001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459535393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:38 Heat of formation + Delta-G solvation = -13.131892 kcal Electronic energy + Delta-G solvation = -25963.121090 eV Core-core repulsion = 22202.091585 eV Total energy + Delta-G solvation = -3761.029505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87163 -39.79669 -38.83138 -37.57724 -37.14577 -35.96199 -33.87999 -32.28126 -32.19306 -30.76948 -29.65859 -27.13696 -26.36386 -24.87348 -24.61299 -23.25846 -22.01774 -21.32629 -20.13194 -18.76443 -18.41821 -18.09843 -17.26377 -16.85326 -16.65879 -16.40144 -16.16735 -15.91458 -15.55436 -15.47082 -15.18606 -15.09074 -15.00125 -14.47769 -14.21668 -14.07388 -13.90007 -13.64931 -13.41936 -13.35370 -12.97119 -12.73635 -12.67302 -12.45631 -12.39753 -12.35575 -12.29157 -11.88514 -11.72223 -11.57035 -11.50616 -10.79387 -10.43572 -10.28483 -9.93104 -9.14760 -8.50930 -7.74110 -5.36233 -0.25061 0.34238 1.47579 1.50109 1.51779 1.52172 1.59905 1.84748 1.93898 2.58327 2.80481 2.92817 3.21054 3.38001 3.50706 3.81963 3.95348 4.13620 4.20065 4.26959 4.40547 4.42799 4.45077 4.50787 4.54798 4.61390 4.73781 4.80318 4.84906 4.91323 4.94929 4.96833 5.09173 5.14057 5.32097 5.36804 5.42984 5.58813 5.73545 5.81995 5.95470 6.15974 6.38259 6.49083 6.68076 6.93003 7.25874 7.92232 8.43523 9.23292 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.003169 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.455912 B = 8834.049804 C = 9750.422881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.054 3.946 4 C 0.138 3.862 5 N -0.589 5.589 6 C -0.240 4.240 7 H 0.051 0.949 8 C -0.026 4.026 9 N -0.921 5.921 10 Si 0.950 3.050 11 H -0.270 1.270 12 H -0.295 1.295 13 H -0.295 1.295 14 C 0.166 3.834 15 C -0.144 4.144 16 C 0.527 3.473 17 O -0.534 6.534 18 N -0.669 5.669 19 C 0.189 3.811 20 C -0.166 4.166 21 C -0.059 4.059 22 C -0.136 4.136 23 C -0.040 4.040 24 C -0.085 4.085 25 C 0.273 3.727 26 N -0.456 5.456 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.248 0.752 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.418 0.582 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 12.593 -17.307 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.024 4.024 4 C 0.012 3.988 5 N -0.309 5.309 6 C -0.371 4.371 7 H 0.069 0.931 8 C -0.223 4.223 9 N -0.566 5.566 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.222 1.222 13 H -0.222 1.222 14 C 0.039 3.961 15 C -0.186 4.186 16 C 0.316 3.684 17 O -0.411 6.411 18 N -0.311 5.311 19 C 0.090 3.910 20 C -0.186 4.186 21 C -0.078 4.078 22 C -0.154 4.154 23 C -0.060 4.060 24 C -0.092 4.092 25 C -0.041 4.041 26 N -0.132 5.132 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.255 0.745 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.186 0.814 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.374 12.582 -16.614 22.107 hybrid contribution -0.471 -1.080 0.660 1.351 sum -7.846 11.502 -15.954 21.175 Atomic orbital electron populations 1.22823 0.81750 1.02591 1.00021 1.88162 1.19368 1.28563 1.95163 1.23286 0.96469 0.84103 0.98561 1.20995 0.90042 0.96198 0.91564 1.43831 1.75509 1.02121 1.09403 1.18973 1.35687 0.82673 0.99758 0.93147 1.25636 0.96806 1.00732 0.99108 1.70101 1.36084 1.36846 1.13553 0.85494 0.77044 0.82044 0.77447 1.19427 1.22240 1.22192 1.20539 0.92758 0.94027 0.88744 1.22316 1.02841 0.99418 0.94041 1.21217 0.84578 0.79231 0.83347 1.90608 1.20988 1.53980 1.75479 1.43672 1.12481 1.55131 1.19864 1.17995 0.94151 0.92464 0.86373 1.21644 0.94845 1.03382 0.98743 1.21677 1.01478 0.92711 0.91921 1.21449 0.91639 1.00615 1.01710 1.21344 0.97955 0.94696 0.92029 1.15825 0.84514 1.07243 1.01580 1.25684 0.92664 0.92892 0.92821 1.81208 1.12805 1.09777 1.09396 0.90035 0.93748 0.93721 0.93717 0.93668 0.91741 0.92958 0.94314 0.94450 0.94010 0.88173 0.88521 0.74546 0.84155 0.82731 0.81365 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.47 10.07 -148.98 -1.50 -17.97 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.31 5.80 86.38 0.50 6.81 16 5 N -0.59 -28.31 2.41 -701.97 -1.69 -30.01 16 6 C -0.24 -12.99 8.84 84.03 0.74 -12.24 16 7 H 0.05 2.74 7.91 -2.91 -0.02 2.71 16 8 C -0.03 -1.46 4.98 84.86 0.42 -1.04 16 9 N -0.92 -54.32 11.48 21.65 0.25 -54.07 16 10 Si 0.95 46.02 29.60 68.60 2.03 48.05 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 14 C 0.17 6.82 5.00 86.38 0.43 7.26 16 15 C -0.14 -4.55 6.01 29.85 0.18 -4.37 16 16 C 0.53 15.37 7.67 87.66 0.67 16.04 16 17 O -0.53 -18.33 12.90 -3.02 -0.04 -18.36 16 18 N -0.67 -15.64 5.21 -302.89 -1.58 -17.22 16 19 C 0.19 4.08 6.50 38.57 0.25 4.33 16 20 C -0.17 -3.52 8.76 22.36 0.20 -3.33 16 21 C -0.06 -0.80 10.03 22.30 0.22 -0.57 16 22 C -0.14 -1.25 10.02 22.24 0.22 -1.03 16 23 C -0.04 -0.45 9.75 22.52 0.22 -0.23 16 24 C -0.09 -1.49 5.75 -21.18 -0.12 -1.61 16 25 C 0.27 5.66 14.20 88.36 1.25 6.91 16 26 N -0.46 -11.37 18.52 18.98 0.35 -11.02 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.53 6.28 -2.39 -0.02 1.51 16 32 H 0.06 3.50 5.55 -2.39 -0.01 3.48 16 33 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 36 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 37 H 0.10 2.90 6.30 -2.39 -0.02 2.89 16 38 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.42 8.47 7.80 -92.70 -0.72 7.75 16 40 H 0.14 3.73 5.47 -2.91 -0.02 3.71 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -70.44 368.31 5.04 -65.40 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.32 Total: 13.77 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.90 Total: 21.44 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -2.67 Total: -112.32 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.54 Total: -36.34 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.44 5.04 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459535393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.267 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds