Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99802 * 2 1 4 4 C 1.53000 * 109.47171 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47074 * 65.00084 * 4 3 2 6 6 C 1.36938 * 119.99682 * 270.00044 * 5 4 3 7 7 H 1.08001 * 119.99925 * 141.45551 * 6 5 4 8 8 C 1.38811 * 120.00165 * 321.45583 * 6 5 4 9 9 N 1.31614 * 120.00307 * 338.83406 * 8 6 5 10 10 Si 1.86807 * 119.99911 * 158.83295 * 8 6 5 11 11 H 1.48497 * 109.47216 * 90.00217 * 10 8 6 12 12 H 1.48500 * 109.47045 * 210.00288 * 10 8 6 13 13 H 1.48498 * 109.47128 * 329.99741 * 10 8 6 14 14 C 1.46497 * 120.00133 * 89.99908 * 5 4 3 15 15 C 1.53001 * 109.46986 * 264.71100 * 14 5 4 16 16 C 1.50701 * 109.46952 * 180.02562 * 15 14 5 17 17 N 1.30976 * 126.43921 * 90.25069 * 16 15 14 18 18 C 1.35222 * 105.57899 * 180.12250 * 17 16 15 19 19 C 1.48425 * 126.41647 * 179.90845 * 18 17 16 20 20 C 1.39328 * 120.12010 * 179.71227 * 19 18 17 21 21 C 1.38022 * 119.87608 * 179.97438 * 20 19 18 22 22 C 1.38326 * 120.11923 * 0.02562 * 21 20 19 23 23 C 1.38316 * 120.24049 * 359.97438 * 22 21 20 24 24 C 1.38019 * 120.12733 * 359.97438 * 23 22 21 25 25 N 1.30763 * 107.17150 * 359.64120 * 18 17 16 26 26 O 1.21295 * 110.09732 * 0.23198 * 25 18 17 27 27 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47089 * 300.00123 * 1 2 3 29 29 H 1.09003 * 109.46826 * 60.00505 * 1 2 3 30 30 H 1.09001 * 109.47852 * 59.99827 * 3 2 1 31 31 H 1.09004 * 109.47218 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47572 * 305.00283 * 4 3 2 33 33 H 1.09001 * 109.47489 * 184.99926 * 4 3 2 34 34 H 0.96995 * 120.00501 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46847 * 144.71182 * 14 5 4 36 36 H 1.08997 * 109.47061 * 24.71242 * 14 5 4 37 37 H 1.08995 * 109.47261 * 60.00335 * 15 14 5 38 38 H 1.08997 * 109.47337 * 299.99973 * 15 14 5 39 39 H 1.07993 * 120.06187 * 359.97438 * 20 19 18 40 40 H 1.07992 * 119.93765 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.87292 * 179.72105 * 22 21 20 42 42 H 1.08002 * 119.93485 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.06451 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8085 -1.3108 -2.2395 8 6 4.5926 -1.5177 -0.2559 9 7 5.3194 -0.9144 0.6606 10 14 4.2267 -3.3434 -0.1052 11 1 5.2897 -4.1197 -0.7926 12 1 4.1857 -3.7232 1.3299 13 1 2.9136 -3.6385 -0.7329 14 6 4.2882 1.3998 -2.4130 15 6 3.0608 1.4870 -3.3223 16 6 3.3815 2.3463 -4.5181 17 7 3.8710 1.9365 -5.6617 18 6 3.9945 3.0473 -6.4228 19 6 4.5097 3.1099 -7.8134 20 6 4.5749 4.3313 -8.4805 21 6 5.0554 4.3837 -9.7734 22 6 5.4711 3.2265 -10.4068 23 6 5.4085 2.0113 -9.7491 24 6 4.9308 1.9474 -8.4558 25 7 3.5696 4.0553 -5.7064 26 8 3.2152 3.6692 -4.6125 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 5.6648 -1.4176 1.4145 35 1 5.1187 0.9596 -2.9649 36 1 4.5640 2.3997 -2.0780 37 1 2.2303 1.9272 -2.7704 38 1 2.7851 0.4871 -3.6574 39 1 4.2502 5.2353 -7.9870 40 1 5.1067 5.3300 -10.2913 41 1 5.8422 3.2714 -11.4201 42 1 5.7341 1.1107 -10.2485 43 1 4.8827 0.9982 -7.9431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459545281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = 71.725536 kcal Electronic energy + Delta-G solvation = -25767.925851 eV Core-core repulsion = 22010.576040 eV Total energy + Delta-G solvation = -3757.349811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.32272 -39.30267 -37.37547 -35.98353 -35.49847 -33.61175 -31.68083 -31.18174 -30.78971 -29.75985 -28.06665 -25.68572 -24.75792 -24.63770 -23.36716 -22.37960 -22.07510 -20.71962 -20.26976 -17.92364 -17.73419 -16.76915 -16.63784 -15.82823 -15.70137 -15.20383 -15.02636 -14.77320 -14.24257 -14.05294 -13.97193 -13.70452 -13.63180 -13.30384 -13.24061 -12.82733 -12.45262 -12.09465 -11.82382 -11.67686 -11.58684 -11.38187 -11.27288 -10.98484 -10.85754 -10.79180 -10.72537 -10.59195 -10.04450 -10.00055 -9.93834 -9.74396 -9.19173 -8.83816 -8.79071 -8.41479 -6.60834 -5.76372 -3.34292 0.61689 1.16556 1.50969 2.53966 3.05144 3.43260 3.50237 3.55959 3.58110 3.66184 4.09539 4.53739 4.65253 4.72006 4.74595 4.85487 5.08389 5.19739 5.34799 5.37550 5.44884 5.57508 5.62702 5.72540 5.75932 5.79458 5.81456 5.85583 6.00483 6.05471 6.09191 6.19042 6.22408 6.24894 6.30373 6.32930 6.50179 6.57343 6.65758 6.68043 6.84302 7.59581 7.87005 8.03527 8.31567 8.54868 9.18141 9.81183 10.35109 11.26393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.002909 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.289863 B = 9621.643457 C =10514.760988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.141 3.859 5 N -0.568 5.568 6 C -0.251 4.251 7 H 0.059 0.941 8 C 0.024 3.976 9 N -0.890 5.890 10 Si 0.899 3.101 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.276 1.276 14 C 0.153 3.847 15 C -0.055 4.055 16 C 0.213 3.787 17 N -0.483 5.483 18 C 0.204 3.796 19 C -0.015 4.015 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.075 4.075 25 N -0.388 5.388 26 O 0.072 5.928 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.254 0.746 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 9.088 -14.209 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.015 3.985 5 N -0.287 5.287 6 C -0.380 4.380 7 H 0.077 0.923 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.024 3.976 15 C -0.098 4.098 16 C -0.007 4.007 17 N -0.216 5.216 18 C -0.065 4.065 19 C -0.017 4.017 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.095 4.095 25 N -0.096 5.096 26 O 0.014 5.986 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.766 9.362 -14.568 17.722 hybrid contribution -0.669 -0.681 0.315 1.005 sum -4.435 8.682 -14.253 17.268 Atomic orbital electron populations 1.22645 0.84223 1.01533 0.98438 1.88227 1.16539 1.27572 1.94822 1.23491 0.98779 0.84216 0.97037 1.21102 0.87554 0.96832 0.93035 1.43638 1.75112 1.02961 1.06970 1.18820 1.36747 0.81238 1.01200 0.92285 1.25070 0.95885 0.97846 0.98855 1.69978 1.33474 1.36027 1.13785 0.86374 0.78390 0.85471 0.76875 1.21624 1.21693 1.20155 1.20800 0.92144 0.95203 0.89493 1.21532 1.03789 0.96565 0.87891 1.29351 0.92586 0.82179 0.96620 1.72053 1.19966 1.27296 1.02255 1.23910 1.00697 0.84707 0.97228 1.17403 1.01848 0.94767 0.87665 1.21190 0.97937 0.96811 0.94730 1.21065 0.99812 0.98792 0.94602 1.21319 0.98566 0.92642 0.99969 1.21142 1.00176 0.98262 0.94566 1.21305 0.95596 0.98070 0.94528 1.74812 1.18314 1.23034 0.93487 1.85263 1.61026 1.25264 1.27083 0.90708 0.95500 0.95277 0.95590 0.95271 0.87905 0.93831 0.93621 0.92433 0.93839 0.89003 0.87187 0.85265 0.85418 0.85649 0.85236 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.35 -7.34 10.18 -35.23 -0.36 -7.69 16 3 C 0.04 0.82 6.28 37.16 0.23 1.05 16 4 C 0.14 3.07 5.76 -4.04 -0.02 3.05 16 5 N -0.57 -13.07 2.41 -173.24 -0.42 -13.49 16 6 C -0.25 -6.53 8.95 -15.06 -0.13 -6.67 16 7 H 0.06 1.55 7.91 -52.49 -0.42 1.14 16 8 C 0.02 0.64 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -25.01 11.53 55.49 0.64 -24.37 16 10 Si 0.90 21.70 29.60 -169.99 -5.03 16.67 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.15 2.96 5.70 -4.04 -0.02 2.94 16 15 C -0.06 -0.91 6.14 -27.88 -0.17 -1.08 16 16 C 0.21 3.49 7.75 -12.99 -0.10 3.39 16 17 N -0.48 -8.32 11.26 -9.88 -0.11 -8.43 16 18 C 0.20 3.33 7.80 -156.11 -1.22 2.11 16 19 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 20 C -0.09 -1.01 9.69 -39.26 -0.38 -1.39 16 21 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 22 C -0.11 -0.91 10.04 -39.52 -0.40 -1.31 16 23 C -0.12 -1.19 10.03 -39.63 -0.40 -1.58 16 24 C -0.08 -0.92 9.70 -39.25 -0.38 -1.30 16 25 N -0.39 -6.38 11.86 30.97 0.37 -6.01 16 26 O 0.07 1.17 11.29 18.04 0.20 1.37 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.50 6.48 -51.93 -0.34 0.16 16 32 H 0.10 2.62 5.58 -51.93 -0.29 2.34 16 33 H 0.04 0.86 7.86 -51.93 -0.41 0.46 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.04 0.78 7.83 -51.93 -0.41 0.38 16 37 H 0.09 1.39 6.48 -51.93 -0.34 1.06 16 38 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 39 H 0.13 1.46 7.87 -52.49 -0.41 1.04 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.14 1.73 7.88 -52.49 -0.41 1.31 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -30.23 368.33 -8.09 -38.32 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.96 Total: -0.86 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.98 Total: -1.05 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.48 Total: -52.30 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.15 Total: -6.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.23 -8.09 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.046 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds