Wall clock time and date at job start Tue Mar 31 2020 11:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99802 * 2 1 4 4 C 1.53000 * 109.47171 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47074 * 65.00084 * 4 3 2 6 6 C 1.36938 * 119.99682 * 270.00044 * 5 4 3 7 7 H 1.08001 * 119.99925 * 141.45551 * 6 5 4 8 8 C 1.38811 * 120.00165 * 321.45583 * 6 5 4 9 9 N 1.31614 * 120.00307 * 338.83406 * 8 6 5 10 10 Si 1.86807 * 119.99911 * 158.83295 * 8 6 5 11 11 H 1.48497 * 109.47216 * 90.00217 * 10 8 6 12 12 H 1.48500 * 109.47045 * 210.00288 * 10 8 6 13 13 H 1.48498 * 109.47128 * 329.99741 * 10 8 6 14 14 C 1.46497 * 120.00133 * 89.99908 * 5 4 3 15 15 C 1.53001 * 109.46986 * 264.71100 * 14 5 4 16 16 C 1.50701 * 109.46952 * 180.02562 * 15 14 5 17 17 N 1.30976 * 126.43921 * 90.25069 * 16 15 14 18 18 C 1.35222 * 105.57899 * 180.12250 * 17 16 15 19 19 C 1.48425 * 126.41647 * 179.90845 * 18 17 16 20 20 C 1.39328 * 120.12010 * 179.71227 * 19 18 17 21 21 C 1.38022 * 119.87608 * 179.97438 * 20 19 18 22 22 C 1.38326 * 120.11923 * 0.02562 * 21 20 19 23 23 C 1.38316 * 120.24049 * 359.97438 * 22 21 20 24 24 C 1.38019 * 120.12733 * 359.97438 * 23 22 21 25 25 N 1.30763 * 107.17150 * 359.64120 * 18 17 16 26 26 O 1.21295 * 110.09732 * 0.23198 * 25 18 17 27 27 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47089 * 300.00123 * 1 2 3 29 29 H 1.09003 * 109.46826 * 60.00505 * 1 2 3 30 30 H 1.09001 * 109.47852 * 59.99827 * 3 2 1 31 31 H 1.09004 * 109.47218 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47572 * 305.00283 * 4 3 2 33 33 H 1.09001 * 109.47489 * 184.99926 * 4 3 2 34 34 H 0.96995 * 120.00501 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46847 * 144.71182 * 14 5 4 36 36 H 1.08997 * 109.47061 * 24.71242 * 14 5 4 37 37 H 1.08995 * 109.47261 * 60.00335 * 15 14 5 38 38 H 1.08997 * 109.47337 * 299.99973 * 15 14 5 39 39 H 1.07993 * 120.06187 * 359.97438 * 20 19 18 40 40 H 1.07992 * 119.93765 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.87292 * 179.72105 * 22 21 20 42 42 H 1.08002 * 119.93485 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.06451 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8085 -1.3108 -2.2395 8 6 4.5926 -1.5177 -0.2559 9 7 5.3194 -0.9144 0.6606 10 14 4.2267 -3.3434 -0.1052 11 1 5.2897 -4.1197 -0.7926 12 1 4.1857 -3.7232 1.3299 13 1 2.9136 -3.6385 -0.7329 14 6 4.2882 1.3998 -2.4130 15 6 3.0608 1.4870 -3.3223 16 6 3.3815 2.3463 -4.5181 17 7 3.8710 1.9365 -5.6617 18 6 3.9945 3.0473 -6.4228 19 6 4.5097 3.1099 -7.8134 20 6 4.5749 4.3313 -8.4805 21 6 5.0554 4.3837 -9.7734 22 6 5.4711 3.2265 -10.4068 23 6 5.4085 2.0113 -9.7491 24 6 4.9308 1.9474 -8.4558 25 7 3.5696 4.0553 -5.7064 26 8 3.2152 3.6692 -4.6125 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 5.6648 -1.4176 1.4145 35 1 5.1187 0.9596 -2.9649 36 1 4.5640 2.3997 -2.0780 37 1 2.2303 1.9272 -2.7704 38 1 2.7851 0.4871 -3.6574 39 1 4.2502 5.2353 -7.9870 40 1 5.1067 5.3300 -10.2913 41 1 5.8422 3.2714 -11.4201 42 1 5.7341 1.1107 -10.2485 43 1 4.8827 0.9982 -7.9431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459545281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:19 Heat of formation + Delta-G solvation = 53.742739 kcal Electronic energy + Delta-G solvation = -25768.705643 eV Core-core repulsion = 22010.576040 eV Total energy + Delta-G solvation = -3758.129603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.59856 -40.12505 -38.92254 -37.48063 -36.84144 -35.04288 -33.36664 -32.05236 -31.92181 -31.11868 -29.66956 -27.09375 -26.35764 -25.80898 -24.66409 -23.56464 -23.13518 -22.12401 -21.74267 -19.22102 -18.87056 -18.58894 -17.63556 -17.33024 -16.74842 -16.57558 -16.46662 -16.10288 -15.66898 -15.50126 -15.36977 -14.92975 -14.69580 -14.41440 -14.29355 -14.21141 -13.95666 -13.46953 -13.35662 -13.02850 -12.84042 -12.65573 -12.50889 -12.40413 -12.37218 -12.31802 -12.27243 -11.94505 -11.89585 -11.56714 -11.47748 -11.30181 -10.42803 -10.23263 -9.98820 -9.71243 -8.51264 -7.75695 -5.36315 -0.38189 0.30074 0.37424 1.39772 1.49442 1.53042 1.62553 1.74078 2.44436 2.59901 2.81623 2.89538 3.26500 3.39032 3.64081 3.89899 3.98971 4.03028 4.16450 4.21543 4.31291 4.41260 4.47790 4.49875 4.55187 4.59405 4.65777 4.74611 4.77744 4.81620 4.90152 4.91652 4.96778 5.01481 5.04696 5.08263 5.28130 5.41624 5.46290 5.48702 5.76602 5.83979 5.92491 6.50499 6.72546 7.04759 7.25692 7.90554 8.40937 9.22513 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.002909 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.289863 B = 9621.643457 C =10514.760988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.244 4.244 7 H 0.052 0.948 8 C -0.023 4.023 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.288 1.288 12 H -0.296 1.296 13 H -0.274 1.274 14 C 0.157 3.843 15 C -0.035 4.035 16 C 0.214 3.786 17 N -0.502 5.502 18 C 0.203 3.797 19 C -0.051 4.051 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.091 4.091 25 N -0.398 5.398 26 O 0.073 5.927 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.248 0.752 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.155 0.845 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 10.189 -16.584 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.303 5.303 6 C -0.375 4.375 7 H 0.069 0.931 8 C -0.220 4.220 9 N -0.564 5.564 10 Si 0.777 3.223 11 H -0.215 1.215 12 H -0.222 1.222 13 H -0.200 1.200 14 C 0.029 3.971 15 C -0.077 4.077 16 C -0.006 4.006 17 N -0.235 5.235 18 C -0.066 4.066 19 C -0.053 4.053 20 C -0.116 4.116 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.111 4.111 25 N -0.108 5.108 26 O 0.016 5.984 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.173 0.827 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.506 10.481 -16.954 20.436 hybrid contribution -0.429 -0.944 0.889 1.366 sum -4.935 9.537 -16.065 19.324 Atomic orbital electron populations 1.22819 0.81704 1.02511 1.00107 1.88151 1.19420 1.28721 1.95204 1.23308 0.96333 0.84087 0.98952 1.21044 0.90069 0.96493 0.91085 1.43757 1.75840 1.02401 1.08254 1.18943 1.35011 0.82934 1.00582 0.93063 1.25610 0.96557 1.00667 0.99214 1.70089 1.35097 1.36861 1.14313 0.85600 0.78097 0.82290 0.76279 1.21500 1.22227 1.19958 1.20758 0.92722 0.95062 0.88596 1.21147 1.02715 0.96362 0.87428 1.29200 0.92574 0.82379 0.96465 1.72053 1.20407 1.28193 1.02861 1.24428 0.99915 0.84092 0.98197 1.17639 1.04261 0.96340 0.87028 1.21315 0.98507 0.95884 0.95913 1.21460 0.98264 1.00576 0.93480 1.21789 0.96539 0.91646 1.01283 1.21475 0.99099 1.00030 0.93410 1.21349 0.96753 0.97135 0.95887 1.74788 1.19171 1.23173 0.93648 1.85241 1.61098 1.24908 1.27158 0.90222 0.93639 0.93645 0.93444 0.93280 0.91729 0.92384 0.94233 0.94637 0.92338 0.87051 0.88154 0.85527 0.82325 0.81925 0.82735 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.00 10.18 -148.98 -1.52 -17.51 16 3 C 0.05 1.85 6.28 71.98 0.45 2.31 16 4 C 0.14 6.03 5.76 86.38 0.50 6.53 16 5 N -0.58 -26.93 2.41 -702.00 -1.69 -28.62 16 6 C -0.24 -12.92 8.95 84.03 0.75 -12.17 16 7 H 0.05 2.74 7.91 -2.91 -0.02 2.72 16 8 C -0.02 -1.29 4.95 84.86 0.42 -0.87 16 9 N -0.92 -53.01 11.53 21.65 0.25 -52.76 16 10 Si 0.95 45.40 29.60 68.60 2.03 47.43 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 13 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.16 6.07 5.70 86.38 0.49 6.56 16 15 C -0.03 -1.12 6.14 29.85 0.18 -0.94 16 16 C 0.21 6.99 7.75 88.36 0.68 7.68 16 17 N -0.50 -17.56 11.26 -302.48 -3.41 -20.96 16 18 C 0.20 6.69 7.80 137.30 1.07 7.76 16 19 C -0.05 -1.40 5.88 -20.04 -0.12 -1.52 16 20 C -0.10 -2.14 9.69 22.48 0.22 -1.92 16 21 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 22 C -0.09 -1.26 10.04 22.31 0.22 -1.03 16 23 C -0.12 -2.06 10.03 22.24 0.22 -1.83 16 24 C -0.09 -2.21 9.70 22.48 0.22 -1.99 16 25 N -0.40 -13.11 11.86 -59.11 -0.70 -13.81 16 26 O 0.07 2.34 11.29 74.60 0.84 3.18 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.55 6.48 -2.39 -0.02 1.53 16 32 H 0.06 3.37 5.58 -2.39 -0.01 3.35 16 33 H 0.06 2.27 7.86 -2.39 -0.02 2.25 16 34 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.06 2.08 7.83 -2.39 -0.02 2.06 16 37 H 0.11 3.17 6.48 -2.39 -0.02 3.16 16 38 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.13 2.78 7.87 -2.91 -0.02 2.76 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.12 3.22 7.88 -2.91 -0.02 3.20 16 Total: -1.00 -67.09 368.33 3.61 -63.48 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.01 Total: 10.64 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.79 Total: 8.94 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -5.55 Total: -116.15 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.67 Total: -14.33 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.09 3.61 -63.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.221 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds