Wall clock time and date at job start Tue Mar 31 2020 11:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99613 * 2 1 4 4 C 1.53005 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47260 * 64.99701 * 4 3 2 6 6 C 1.36936 * 120.00057 * 274.75696 * 5 4 3 7 7 H 1.08002 * 120.00227 * 146.16944 * 6 5 4 8 8 C 1.38814 * 120.00098 * 326.16953 * 6 5 4 9 9 N 1.31627 * 119.99539 * 334.98078 * 8 6 5 10 10 Si 1.86797 * 120.00393 * 154.98652 * 8 6 5 11 11 H 1.48496 * 109.46933 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47175 * 119.99678 * 10 8 6 13 13 H 1.48503 * 109.46835 * 239.99951 * 10 8 6 14 14 C 1.46502 * 120.00085 * 94.75474 * 5 4 3 15 15 C 1.50700 * 109.47196 * 269.99925 * 14 5 4 16 16 N 1.31130 * 126.54985 * 90.25000 * 15 14 5 17 17 C 1.34492 * 105.61330 * 180.12264 * 16 15 14 18 18 C 1.50699 * 126.28525 * 179.90493 * 17 16 15 19 19 C 1.50700 * 109.47111 * 269.71322 * 18 17 16 20 20 C 1.38229 * 120.00229 * 90.00466 * 19 18 17 21 21 C 1.38241 * 120.00260 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99916 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99497 * 0.25771 * 22 21 20 24 24 C 1.38233 * 120.00391 * 359.48846 * 23 22 21 25 25 N 1.29938 * 107.42470 * 359.64414 * 17 16 15 26 26 O 1.21298 * 110.25545 * 0.22370 * 25 17 16 27 27 H 1.09004 * 109.47147 * 60.00437 * 1 2 3 28 28 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47309 * 299.99980 * 1 2 3 30 30 H 1.08997 * 109.47186 * 59.99667 * 3 2 1 31 31 H 1.09000 * 109.46592 * 299.99689 * 3 2 1 32 32 H 1.09003 * 109.46532 * 304.99409 * 4 3 2 33 33 H 1.08999 * 109.46929 * 184.99980 * 4 3 2 34 34 H 0.97002 * 119.99418 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46777 * 149.99955 * 14 5 4 36 36 H 1.09001 * 109.46531 * 29.99837 * 14 5 4 37 37 H 1.08999 * 109.47186 * 149.71246 * 18 17 16 38 38 H 1.08996 * 109.47807 * 29.71331 * 18 17 16 39 39 H 1.08003 * 119.99767 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.00053 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00142 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99727 * 179.72843 * 23 22 21 43 43 H 1.08001 * 119.99548 * 180.23646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0035 -0.7997 -1.3682 7 1 3.7845 -1.2659 -2.3174 8 6 4.3133 -1.5835 -0.2651 9 7 5.0362 -1.0840 0.7149 10 14 3.7045 -3.3470 -0.1717 11 1 2.9184 -3.6645 -1.3909 12 1 4.8661 -4.2674 -0.0775 13 1 2.8445 -3.5108 1.0278 14 6 4.3861 1.4037 -2.3812 15 6 3.1885 1.7044 -3.2452 16 7 2.3755 2.7261 -3.1247 17 6 1.4635 2.5803 -4.1024 18 6 0.3057 3.5021 -4.3867 19 6 -0.9020 3.0463 -3.6091 20 6 -1.1277 3.5327 -2.3350 21 6 -2.2352 3.1143 -1.6214 22 6 -3.1174 2.2097 -2.1822 23 6 -2.8891 1.7196 -3.4544 24 6 -1.7844 2.1421 -4.1700 25 7 1.7673 1.5017 -4.7601 26 8 2.7552 0.9835 -4.2838 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.2529 -1.6318 1.4856 35 1 5.1367 0.8776 -2.9710 36 1 4.8069 2.3365 -2.0060 37 1 0.0797 3.4832 -5.4529 38 1 0.5677 4.5172 -4.0888 39 1 -0.4382 4.2392 -1.8968 40 1 -2.4113 3.4940 -0.6259 41 1 -3.9825 1.8825 -1.6246 42 1 -3.5760 1.0096 -3.8909 43 1 -1.6083 1.7620 -5.1654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459548902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:17 Heat of formation + Delta-G solvation = 73.801955 kcal Electronic energy + Delta-G solvation = -27552.954255 eV Core-core repulsion = 23795.694484 eV Total energy + Delta-G solvation = -3757.259771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.88250 -39.30217 -37.26140 -35.72888 -35.44017 -33.27525 -31.87649 -30.96649 -30.88620 -29.10101 -27.48969 -26.44845 -25.64096 -23.55163 -22.92839 -22.60770 -21.84517 -20.90659 -20.10973 -17.52414 -16.99420 -16.80489 -16.57440 -15.70938 -15.28186 -15.20560 -14.99875 -14.71434 -14.48237 -14.18057 -13.84019 -13.54209 -13.45033 -13.34584 -13.29787 -12.50699 -12.35669 -12.09015 -11.79756 -11.57248 -11.48805 -11.11691 -11.03811 -10.93535 -10.86744 -10.72188 -10.68925 -10.44050 -10.20684 -10.02425 -9.76586 -9.35709 -8.95148 -8.81397 -8.72449 -8.54117 -6.84153 -5.85118 -3.38884 1.24333 1.37368 1.83253 2.79235 3.41287 3.50772 3.56099 3.60175 3.70796 4.23658 4.49415 4.51729 4.73115 4.73516 4.86335 4.95620 5.08423 5.25161 5.32831 5.41167 5.42013 5.52402 5.60609 5.78092 5.80277 5.88265 5.95807 6.00581 6.07815 6.13104 6.20796 6.25016 6.37286 6.40273 6.43303 6.46433 6.56408 6.57408 6.62791 6.63866 6.95087 7.58709 7.81027 8.08497 8.41821 8.79930 9.06151 9.71208 10.18276 11.17292 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.005064 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.012783 B = 5527.456638 C = 6373.260775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.045 3.955 4 C 0.137 3.863 5 N -0.551 5.551 6 C -0.260 4.260 7 H 0.064 0.936 8 C 0.033 3.967 9 N -0.883 5.883 10 Si 0.901 3.099 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.217 3.783 15 C 0.198 3.802 16 N -0.499 5.499 17 C 0.162 3.838 18 C 0.017 3.983 19 C -0.082 4.082 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.106 4.106 25 N -0.400 5.400 26 O 0.071 5.929 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 9.814 -5.391 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C -0.034 4.034 4 C 0.011 3.989 5 N -0.269 5.269 6 C -0.388 4.388 7 H 0.082 0.918 8 C -0.168 4.168 9 N -0.524 5.524 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.220 1.220 13 H -0.213 1.213 14 C 0.084 3.916 15 C -0.026 4.026 16 N -0.234 5.234 17 C -0.111 4.111 18 C -0.022 4.022 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.124 4.124 25 N -0.111 5.111 26 O 0.016 5.984 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.396 9.624 -5.714 15.973 hybrid contribution -0.819 -0.783 0.270 1.164 sum -12.214 8.842 -5.444 16.031 Atomic orbital electron populations 1.22572 0.84344 1.01169 0.98286 1.88203 1.16419 1.27608 1.94852 1.23335 0.98223 0.84266 0.97550 1.21264 0.88266 0.96835 0.92547 1.43831 1.72355 1.02585 1.08131 1.18923 1.42409 0.80121 0.97396 0.91829 1.24871 0.96209 0.97931 0.97802 1.69989 1.35223 1.36987 1.10248 0.86282 0.78310 0.84340 0.78005 1.20128 1.22023 1.21333 1.19682 0.85879 0.97456 0.88546 1.31785 0.99311 0.84198 0.87312 1.71822 1.05518 1.24000 1.22089 1.25391 0.98741 0.94957 0.92030 1.18747 0.86558 0.96431 1.00463 1.19597 0.95355 0.98172 0.95207 1.21083 0.97154 0.99933 0.93665 1.21129 0.94904 0.98079 0.99747 1.21152 0.99523 0.97522 0.95586 1.21107 0.97820 0.99998 0.95037 1.21067 0.94451 0.96683 1.00231 1.74491 1.02848 1.11216 1.22526 1.85282 1.31047 1.45025 1.37037 0.95553 0.90995 0.95626 0.95939 0.94350 0.87214 0.93479 0.93484 0.89099 0.89406 0.88778 0.88194 0.85791 0.86082 0.86219 0.86125 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 101.05 1.11 1.75 16 2 O -0.35 -8.22 9.95 -35.23 -0.35 -8.57 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.08 5.83 -4.04 -0.02 3.05 16 5 N -0.55 -12.84 2.44 -174.61 -0.43 -13.27 16 6 C -0.26 -6.83 8.73 -15.06 -0.13 -6.96 16 7 H 0.06 1.72 7.94 -52.49 -0.42 1.31 16 8 C 0.03 0.88 4.94 -17.43 -0.09 0.80 16 9 N -0.88 -24.35 11.38 55.49 0.63 -23.72 16 10 Si 0.90 22.12 29.62 -169.99 -5.04 17.08 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.22 4.17 6.33 -5.19 -0.03 4.14 16 15 C 0.20 3.83 7.80 -13.06 -0.10 3.73 16 16 N -0.50 -9.29 10.57 -9.88 -0.10 -9.39 16 17 C 0.16 2.82 7.45 -156.38 -1.17 1.65 16 18 C 0.02 0.22 5.97 -29.04 -0.17 0.05 16 19 C -0.08 -1.11 5.12 -104.63 -0.54 -1.65 16 20 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 24 C -0.11 -1.38 9.70 -39.58 -0.38 -1.77 16 25 N -0.40 -7.67 12.16 30.89 0.38 -7.29 16 26 O 0.07 1.44 11.31 18.10 0.20 1.65 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.82 6.80 -51.93 -0.35 0.47 16 32 H 0.11 2.83 5.38 -51.93 -0.28 2.55 16 33 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.09 1.65 8.04 -51.93 -0.42 1.23 16 36 H 0.09 1.50 7.86 -51.93 -0.41 1.09 16 37 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 38 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -30.57 368.95 -8.07 -38.64 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.06 Total: 0.47 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.86 Total: -1.16 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.48 Total: -53.67 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.15 Total: -6.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.04 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.57 -8.07 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459548902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.441 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds