Wall clock time and date at job start Tue Mar 31 2020 11:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99613 * 2 1 4 4 C 1.53005 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47260 * 64.99701 * 4 3 2 6 6 C 1.36936 * 120.00057 * 274.75696 * 5 4 3 7 7 H 1.08002 * 120.00227 * 146.16944 * 6 5 4 8 8 C 1.38814 * 120.00098 * 326.16953 * 6 5 4 9 9 N 1.31627 * 119.99539 * 334.98078 * 8 6 5 10 10 Si 1.86797 * 120.00393 * 154.98652 * 8 6 5 11 11 H 1.48496 * 109.46933 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47175 * 119.99678 * 10 8 6 13 13 H 1.48503 * 109.46835 * 239.99951 * 10 8 6 14 14 C 1.46502 * 120.00085 * 94.75474 * 5 4 3 15 15 C 1.50700 * 109.47196 * 269.99925 * 14 5 4 16 16 N 1.31130 * 126.54985 * 90.25000 * 15 14 5 17 17 C 1.34492 * 105.61330 * 180.12264 * 16 15 14 18 18 C 1.50699 * 126.28525 * 179.90493 * 17 16 15 19 19 C 1.50700 * 109.47111 * 269.71322 * 18 17 16 20 20 C 1.38229 * 120.00229 * 90.00466 * 19 18 17 21 21 C 1.38241 * 120.00260 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99916 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99497 * 0.25771 * 22 21 20 24 24 C 1.38233 * 120.00391 * 359.48846 * 23 22 21 25 25 N 1.29938 * 107.42470 * 359.64414 * 17 16 15 26 26 O 1.21298 * 110.25545 * 0.22370 * 25 17 16 27 27 H 1.09004 * 109.47147 * 60.00437 * 1 2 3 28 28 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47309 * 299.99980 * 1 2 3 30 30 H 1.08997 * 109.47186 * 59.99667 * 3 2 1 31 31 H 1.09000 * 109.46592 * 299.99689 * 3 2 1 32 32 H 1.09003 * 109.46532 * 304.99409 * 4 3 2 33 33 H 1.08999 * 109.46929 * 184.99980 * 4 3 2 34 34 H 0.97002 * 119.99418 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46777 * 149.99955 * 14 5 4 36 36 H 1.09001 * 109.46531 * 29.99837 * 14 5 4 37 37 H 1.08999 * 109.47186 * 149.71246 * 18 17 16 38 38 H 1.08996 * 109.47807 * 29.71331 * 18 17 16 39 39 H 1.08003 * 119.99767 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.00053 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00142 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99727 * 179.72843 * 23 22 21 43 43 H 1.08001 * 119.99548 * 180.23646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0035 -0.7997 -1.3682 7 1 3.7845 -1.2659 -2.3174 8 6 4.3133 -1.5835 -0.2651 9 7 5.0362 -1.0840 0.7149 10 14 3.7045 -3.3470 -0.1717 11 1 2.9184 -3.6645 -1.3909 12 1 4.8661 -4.2674 -0.0775 13 1 2.8445 -3.5108 1.0278 14 6 4.3861 1.4037 -2.3812 15 6 3.1885 1.7044 -3.2452 16 7 2.3755 2.7261 -3.1247 17 6 1.4635 2.5803 -4.1024 18 6 0.3057 3.5021 -4.3867 19 6 -0.9020 3.0463 -3.6091 20 6 -1.1277 3.5327 -2.3350 21 6 -2.2352 3.1143 -1.6214 22 6 -3.1174 2.2097 -2.1822 23 6 -2.8891 1.7196 -3.4544 24 6 -1.7844 2.1421 -4.1700 25 7 1.7673 1.5017 -4.7601 26 8 2.7552 0.9835 -4.2838 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.2529 -1.6318 1.4856 35 1 5.1367 0.8776 -2.9710 36 1 4.8069 2.3365 -2.0060 37 1 0.0797 3.4832 -5.4529 38 1 0.5677 4.5172 -4.0888 39 1 -0.4382 4.2392 -1.8968 40 1 -2.4113 3.4940 -0.6259 41 1 -3.9825 1.8825 -1.6246 42 1 -3.5760 1.0096 -3.8909 43 1 -1.6083 1.7620 -5.1654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459548902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:15 Heat of formation + Delta-G solvation = 56.235727 kcal Electronic energy + Delta-G solvation = -27553.715983 eV Core-core repulsion = 23795.694484 eV Total energy + Delta-G solvation = -3758.021499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.34770 -40.22844 -38.96189 -37.37331 -36.88138 -34.65689 -33.43842 -32.52206 -31.83872 -30.73617 -28.57127 -28.19442 -27.23162 -25.26514 -24.37960 -23.55334 -23.13096 -22.39671 -21.53520 -19.04728 -18.64830 -18.31240 -17.64796 -17.38539 -16.78899 -16.53361 -16.24901 -16.13172 -15.88192 -15.70110 -15.48238 -15.16254 -14.95769 -14.34828 -14.32856 -13.76679 -13.51944 -13.49811 -13.35572 -13.12818 -12.83638 -12.71596 -12.64606 -12.56040 -12.41688 -12.16305 -11.98737 -11.95044 -11.88023 -11.81259 -11.57876 -10.85827 -10.50996 -10.37693 -9.87250 -9.75736 -8.75317 -7.85254 -5.40252 0.23157 0.39933 0.44842 1.37668 1.45264 1.50983 1.59132 2.11804 2.55096 2.66355 2.99703 3.14573 3.24414 3.34490 3.61610 3.76089 3.89732 4.09489 4.19101 4.23991 4.33710 4.38440 4.41135 4.52249 4.56927 4.58367 4.62846 4.66932 4.70797 4.74409 4.77634 4.89227 4.93822 4.95858 5.07507 5.10711 5.16134 5.50093 5.56178 5.60916 5.70550 5.78097 6.05135 6.36300 6.59643 7.12086 7.32582 7.78231 8.24037 9.13915 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.005064 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.012783 B = 5527.456638 C = 6373.260775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.391 6.391 3 C 0.054 3.946 4 C 0.137 3.863 5 N -0.565 5.565 6 C -0.255 4.255 7 H 0.048 0.952 8 C -0.003 4.003 9 N -0.903 5.903 10 Si 0.941 3.059 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.294 1.294 14 C 0.219 3.781 15 C 0.194 3.806 16 N -0.499 5.499 17 C 0.171 3.829 18 C 0.018 3.982 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.122 4.122 25 N -0.416 5.416 26 O 0.048 5.952 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 10.877 -5.370 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.025 4.025 4 C 0.011 3.989 5 N -0.284 5.284 6 C -0.384 4.384 7 H 0.066 0.934 8 C -0.202 4.202 9 N -0.546 5.546 10 Si 0.771 3.229 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.221 1.221 14 C 0.088 3.912 15 C -0.030 4.030 16 N -0.235 5.235 17 C -0.102 4.102 18 C -0.021 4.021 19 C -0.099 4.099 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.140 4.140 25 N -0.130 5.130 26 O -0.003 6.003 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.848 10.687 -5.709 17.660 hybrid contribution -0.472 -1.036 0.213 1.158 sum -13.320 9.651 -5.496 17.343 Atomic orbital electron populations 1.22668 0.82247 1.02019 0.99231 1.88139 1.18873 1.28840 1.95106 1.23220 0.97201 0.83783 0.98247 1.21199 0.89383 0.97057 0.91244 1.43865 1.73102 1.02051 1.09362 1.18881 1.41127 0.81821 0.96609 0.93430 1.25264 0.96941 0.99947 0.98031 1.70061 1.36410 1.37582 1.10577 0.85661 0.77778 0.82329 0.77169 1.20627 1.21543 1.22061 1.19833 0.85891 0.98080 0.87413 1.31548 0.99441 0.84529 0.87462 1.71843 1.05615 1.23699 1.22312 1.26114 0.98844 0.94545 0.90703 1.18977 0.85084 0.96315 1.01710 1.19674 0.95617 0.98945 0.95667 1.21254 0.97847 1.00343 0.93747 1.21425 0.94537 0.97987 1.00550 1.21496 1.00069 0.96904 0.95534 1.21420 0.97781 1.00190 0.95344 1.21259 0.95065 0.96963 1.00715 1.74499 1.02949 1.12192 1.23380 1.85258 1.31738 1.45700 1.37573 0.95896 0.90311 0.93158 0.93938 0.94630 0.90294 0.91352 0.93822 0.88428 0.86857 0.87049 0.86344 0.85506 0.84238 0.83824 0.84259 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.26 11.01 113.37 1.25 2.51 16 2 O -0.39 -17.82 9.95 -148.98 -1.48 -19.30 16 3 C 0.05 2.22 6.28 71.98 0.45 2.67 16 4 C 0.14 6.05 5.83 86.38 0.50 6.55 16 5 N -0.57 -26.04 2.44 -706.33 -1.72 -27.76 16 6 C -0.25 -13.43 8.73 84.03 0.73 -12.70 16 7 H 0.05 2.62 7.94 -2.91 -0.02 2.60 16 8 C 0.00 -0.17 4.94 84.86 0.42 0.25 16 9 N -0.90 -50.12 11.38 21.65 0.25 -49.88 16 10 Si 0.94 45.66 29.62 68.60 2.03 47.69 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 14 C 0.22 8.21 6.33 85.63 0.54 8.75 16 15 C 0.19 7.35 7.80 88.38 0.69 8.04 16 16 N -0.50 -17.85 10.57 -303.23 -3.20 -21.05 16 17 C 0.17 5.73 7.45 138.47 1.03 6.76 16 18 C 0.02 0.43 5.97 29.10 0.17 0.61 16 19 C -0.10 -2.49 5.12 -19.87 -0.10 -2.59 16 20 C -0.11 -2.76 9.70 22.27 0.22 -2.55 16 21 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 22 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 23 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 24 C -0.12 -3.00 9.70 22.27 0.22 -2.78 16 25 N -0.42 -15.68 12.16 -60.35 -0.73 -16.41 16 26 O 0.05 1.94 11.31 74.85 0.85 2.79 16 27 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.47 6.80 -2.39 -0.02 1.45 16 32 H 0.08 4.08 5.38 -2.39 -0.01 4.06 16 33 H 0.07 2.65 7.84 -2.39 -0.02 2.64 16 34 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 35 H 0.10 3.49 8.04 -2.39 -0.02 3.47 16 36 H 0.11 3.64 7.86 -2.39 -0.02 3.63 16 37 H 0.11 2.32 8.09 -2.39 -0.02 2.30 16 38 H 0.12 2.44 8.09 -2.39 -0.02 2.42 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -64.73 368.95 3.79 -60.95 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.01 Total: 14.83 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.80 Total: 8.16 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -5.41 Total: -115.10 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.64 Total: -16.51 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.73 3.79 -60.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459548902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.185 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds