Wall clock time and date at job start Tue Mar 31 2020 11:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00191 * 2 1 4 4 C 1.52993 * 109.47408 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47514 * 180.02562 * 4 3 2 6 6 C 1.36969 * 125.07513 * 265.02832 * 5 4 3 7 7 C 1.34191 * 109.92186 * 179.97438 * 6 5 4 8 8 C 1.46552 * 107.01530 * 359.97438 * 7 6 5 9 9 C 1.39665 * 133.92494 * 180.02562 * 8 7 6 10 10 C 1.36520 * 119.86636 * 179.97438 * 9 8 7 11 11 C 1.39408 * 120.46062 * 359.97438 * 10 9 8 12 12 N 1.40032 * 119.74742 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00220 * 213.55757 * 12 11 10 14 14 O 1.21591 * 120.00008 * 5.32272 * 13 12 11 15 15 N 1.34774 * 119.99876 * 185.32633 * 13 12 11 16 16 C 1.46502 * 120.00075 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47436 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00264 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00243 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47222 * 89.99937 * 21 19 17 23 23 H 1.48496 * 109.47167 * 210.00091 * 21 19 17 24 24 H 1.48495 * 109.47187 * 330.00172 * 21 19 17 25 25 C 1.38358 * 120.51013 * 0.02864 * 11 10 9 26 26 C 1.37711 * 125.07329 * 84.71723 * 5 4 3 27 27 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46850 * 299.99713 * 1 2 3 29 29 H 1.09001 * 109.47026 * 59.99612 * 1 2 3 30 30 H 1.08998 * 109.47226 * 59.99848 * 3 2 1 31 31 H 1.08999 * 109.47589 * 300.00544 * 3 2 1 32 32 H 1.09008 * 109.47318 * 60.00471 * 4 3 2 33 33 H 1.08999 * 109.47502 * 300.00389 * 4 3 2 34 34 H 1.07999 * 125.03688 * 359.95474 * 6 5 4 35 35 H 1.08001 * 126.49233 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.06475 * 359.95773 * 9 8 7 37 37 H 1.08001 * 119.77595 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99739 * 33.55786 * 12 11 10 39 39 H 0.96998 * 120.00298 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.46907 * 299.99951 * 16 15 13 41 41 H 1.09001 * 109.47064 * 59.99186 * 16 15 13 42 42 H 0.97002 * 120.00252 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.13654 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.5399 3.2031 -1.1165 7 6 5.0386 4.3987 -0.7665 8 6 4.9416 4.4934 0.6927 9 6 5.2885 5.4736 1.6253 10 6 5.0649 5.2568 2.9545 11 6 4.4915 4.0627 3.3891 12 7 4.2683 3.8563 4.7561 13 6 4.3759 2.6179 5.2770 14 8 4.7605 1.6973 4.5821 15 7 4.0572 2.4001 6.5683 16 6 4.1736 1.0539 7.1345 17 6 3.7609 1.0809 8.5836 18 1 3.4433 2.0080 9.0374 19 6 3.7879 -0.0781 9.3299 20 7 3.4273 -0.0546 10.5943 21 14 4.3366 -1.6819 8.5447 22 1 5.8044 -1.8365 8.7088 23 1 3.6426 -2.8179 9.2026 24 1 3.9991 -1.6660 7.0987 25 6 4.1413 3.0800 2.4804 26 6 4.3589 3.2873 1.1226 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8568 0.6439 -0.8909 33 1 3.8575 0.6435 0.8890 34 1 4.4711 2.8321 -2.1284 35 1 5.4355 5.1494 -1.4339 36 1 5.7329 6.4011 1.2955 37 1 5.3333 6.0159 3.6743 38 1 4.0363 4.6046 5.3280 39 1 3.7507 3.1345 7.1228 40 1 3.5258 0.3712 6.5845 41 1 5.2069 0.7154 7.0575 42 1 3.4459 -0.8701 11.1193 43 1 3.6971 2.1574 2.8237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488561434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:04 Heat of formation + Delta-G solvation = -4.667488 kcal Electronic energy + Delta-G solvation = -25718.303565 eV Core-core repulsion = 21957.641104 eV Total energy + Delta-G solvation = -3760.662461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39651 -39.81920 -38.23846 -37.13794 -34.51554 -34.09884 -32.94435 -32.27249 -30.69271 -28.79266 -28.39399 -27.12689 -26.35615 -23.68425 -23.07356 -22.07380 -21.28630 -20.30782 -20.20557 -18.40701 -17.56710 -16.99227 -16.52981 -16.34413 -16.27935 -15.80819 -15.47933 -15.01057 -14.80118 -14.37078 -14.20141 -14.14803 -13.80281 -13.38652 -13.25005 -13.16760 -13.03955 -12.57089 -12.38474 -12.30541 -11.85213 -11.74840 -11.71193 -11.45526 -11.04097 -11.00136 -10.78292 -10.04924 -9.99594 -9.97415 -9.65912 -9.49430 -9.20645 -8.79885 -8.23745 -7.91392 -7.36380 -6.22963 -4.25399 1.20558 1.64088 2.49187 2.66940 3.11212 3.26863 3.34079 3.41911 3.58572 3.67531 4.06813 4.32382 4.44377 4.66639 4.69463 4.72769 4.87585 4.94459 5.02493 5.07705 5.12586 5.13120 5.26946 5.34207 5.38519 5.45109 5.48358 5.62730 5.65035 5.86992 6.06838 6.36348 6.47242 6.56765 6.72686 6.73822 6.80526 6.94090 7.06498 7.16079 7.24427 7.30799 7.33481 7.49902 8.23402 8.58372 8.76145 9.06537 9.37234 10.88912 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.003409 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.116425 B = 8212.503489 C = 9995.766262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.112 3.888 5 N -0.482 5.482 6 C 0.042 3.958 7 C -0.198 4.198 8 C -0.131 4.131 9 C -0.055 4.055 10 C -0.168 4.168 11 C 0.196 3.804 12 N -0.692 5.692 13 C 0.692 3.308 14 O -0.585 6.585 15 N -0.716 5.716 16 C 0.238 3.762 17 C -0.544 4.544 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.136 4.136 26 C 0.120 3.880 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.405 0.595 39 H 0.394 0.606 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.268 0.732 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 9.460 -24.035 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.031 4.031 4 C -0.010 4.010 5 N -0.167 5.167 6 C -0.082 4.082 7 C -0.223 4.223 8 C -0.136 4.136 9 C -0.074 4.074 10 C -0.189 4.189 11 C 0.099 3.901 12 N -0.340 5.340 13 C 0.392 3.608 14 O -0.463 6.463 15 N -0.368 5.368 16 C 0.115 3.885 17 C -0.582 4.582 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.160 4.160 26 C 0.014 3.986 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.241 0.759 39 H 0.228 0.772 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.811 7.912 -24.400 25.715 hybrid contribution -0.230 -0.004 0.380 0.444 sum -2.041 7.908 -24.020 25.371 Atomic orbital electron populations 1.22780 0.80209 1.03117 1.00210 1.87816 1.20370 1.26931 1.95515 1.22841 0.93630 0.85390 1.01258 1.21469 0.91723 0.82062 1.05744 1.43752 1.53313 1.14734 1.04919 1.21752 1.02131 0.93369 0.90941 1.21612 1.09493 0.98166 0.93001 1.19144 1.06049 0.94826 0.93608 1.19956 0.98487 0.97661 0.91278 1.20375 1.04489 0.97908 0.96173 1.17010 0.96644 0.94359 0.82084 1.42756 1.74045 1.09818 1.07387 1.16136 0.79146 0.82418 0.83114 1.90888 1.53061 1.42103 1.60239 1.45442 1.68916 1.13888 1.08530 1.19413 0.96770 0.78322 0.93967 1.21070 1.46861 0.97489 0.92760 0.90224 1.24770 0.94185 0.98978 0.94610 1.69874 1.47035 1.28848 1.07171 0.86823 0.79432 0.82993 0.80494 1.19795 1.20878 1.18452 1.19943 1.06049 1.01572 0.88419 1.18004 1.01272 0.91411 0.87935 0.89203 0.93655 0.94032 0.92462 0.92808 0.88430 0.88289 0.81783 0.83788 0.85814 0.85732 0.75946 0.77220 0.95739 0.96161 0.92219 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.44 10.70 -35.23 -0.38 -4.82 16 3 C 0.05 0.49 6.26 37.15 0.23 0.72 16 4 C 0.11 1.21 6.37 -4.05 -0.03 1.19 16 5 N -0.48 -5.80 2.78 -114.41 -0.32 -6.12 16 6 C 0.04 0.41 11.28 -16.68 -0.19 0.22 16 7 C -0.20 -2.09 11.08 -37.66 -0.42 -2.51 16 8 C -0.13 -1.72 6.37 -105.09 -0.67 -2.39 16 9 C -0.05 -0.65 10.04 -39.67 -0.40 -1.04 16 10 C -0.17 -2.09 9.88 -39.77 -0.39 -2.48 16 11 C 0.20 2.98 6.28 -83.63 -0.52 2.45 16 12 N -0.69 -10.46 5.35 -14.19 -0.08 -10.53 16 13 C 0.69 13.62 8.29 -86.92 -0.72 12.90 16 14 O -0.58 -13.64 14.03 5.29 0.07 -13.57 16 15 N -0.72 -14.51 5.55 -66.41 -0.37 -14.88 16 16 C 0.24 5.85 4.50 -5.19 -0.02 5.82 16 17 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 21 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 C -0.14 -2.22 8.58 -39.23 -0.34 -2.56 16 26 C 0.12 1.74 6.81 -84.00 -0.57 1.16 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.83 8.12 -51.92 -0.42 0.41 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.41 4.65 8.83 -40.82 -0.36 4.29 16 39 H 0.39 6.91 8.34 -40.82 -0.34 6.57 16 40 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.14 2.50 6.40 -52.49 -0.34 2.17 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -34.37 366.34 -8.83 -43.20 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.03 Total: 8.21 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.36 Total: 1.83 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.01 Total: -57.15 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.30 Total: -18.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.37 -8.83 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488561434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.534 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds