Wall clock time and date at job start Tue Mar 31 2020 11:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00191 * 2 1 4 4 C 1.52993 * 109.47408 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47514 * 180.02562 * 4 3 2 6 6 C 1.36969 * 125.07513 * 265.02832 * 5 4 3 7 7 C 1.34191 * 109.92186 * 179.97438 * 6 5 4 8 8 C 1.46552 * 107.01530 * 359.97438 * 7 6 5 9 9 C 1.39665 * 133.92494 * 180.02562 * 8 7 6 10 10 C 1.36520 * 119.86636 * 179.97438 * 9 8 7 11 11 C 1.39408 * 120.46062 * 359.97438 * 10 9 8 12 12 N 1.40032 * 119.74742 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00220 * 213.55757 * 12 11 10 14 14 O 1.21591 * 120.00008 * 5.32272 * 13 12 11 15 15 N 1.34774 * 119.99876 * 185.32633 * 13 12 11 16 16 C 1.46502 * 120.00075 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47436 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00264 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00243 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47222 * 89.99937 * 21 19 17 23 23 H 1.48496 * 109.47167 * 210.00091 * 21 19 17 24 24 H 1.48495 * 109.47187 * 330.00172 * 21 19 17 25 25 C 1.38358 * 120.51013 * 0.02864 * 11 10 9 26 26 C 1.37711 * 125.07329 * 84.71723 * 5 4 3 27 27 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46850 * 299.99713 * 1 2 3 29 29 H 1.09001 * 109.47026 * 59.99612 * 1 2 3 30 30 H 1.08998 * 109.47226 * 59.99848 * 3 2 1 31 31 H 1.08999 * 109.47589 * 300.00544 * 3 2 1 32 32 H 1.09008 * 109.47318 * 60.00471 * 4 3 2 33 33 H 1.08999 * 109.47502 * 300.00389 * 4 3 2 34 34 H 1.07999 * 125.03688 * 359.95474 * 6 5 4 35 35 H 1.08001 * 126.49233 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.06475 * 359.95773 * 9 8 7 37 37 H 1.08001 * 119.77595 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99739 * 33.55786 * 12 11 10 39 39 H 0.96998 * 120.00298 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.46907 * 299.99951 * 16 15 13 41 41 H 1.09001 * 109.47064 * 59.99186 * 16 15 13 42 42 H 0.97002 * 120.00252 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.13654 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.5399 3.2031 -1.1165 7 6 5.0386 4.3987 -0.7665 8 6 4.9416 4.4934 0.6927 9 6 5.2885 5.4736 1.6253 10 6 5.0649 5.2568 2.9545 11 6 4.4915 4.0627 3.3891 12 7 4.2683 3.8563 4.7561 13 6 4.3759 2.6179 5.2770 14 8 4.7605 1.6973 4.5821 15 7 4.0572 2.4001 6.5683 16 6 4.1736 1.0539 7.1345 17 6 3.7609 1.0809 8.5836 18 1 3.4433 2.0080 9.0374 19 6 3.7879 -0.0781 9.3299 20 7 3.4273 -0.0546 10.5943 21 14 4.3366 -1.6819 8.5447 22 1 5.8044 -1.8365 8.7088 23 1 3.6426 -2.8179 9.2026 24 1 3.9991 -1.6660 7.0987 25 6 4.1413 3.0800 2.4804 26 6 4.3589 3.2873 1.1226 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8568 0.6439 -0.8909 33 1 3.8575 0.6435 0.8890 34 1 4.4711 2.8321 -2.1284 35 1 5.4355 5.1494 -1.4339 36 1 5.7329 6.4011 1.2955 37 1 5.3333 6.0159 3.6743 38 1 4.0363 4.6046 5.3280 39 1 3.7507 3.1345 7.1228 40 1 3.5258 0.3712 6.5845 41 1 5.2069 0.7154 7.0575 42 1 3.4459 -0.8701 11.1193 43 1 3.6971 2.1574 2.8237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488561434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:03 Heat of formation + Delta-G solvation = -28.565564 kcal Electronic energy + Delta-G solvation = -25719.339864 eV Core-core repulsion = 21957.641104 eV Total energy + Delta-G solvation = -3761.698759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35640 -41.25954 -39.10016 -38.28955 -36.23643 -35.42857 -34.49379 -33.75068 -31.68766 -30.26760 -29.45768 -28.47388 -27.11736 -24.81698 -24.40316 -23.42184 -22.47498 -21.81010 -21.13587 -19.99357 -18.73522 -18.30331 -17.97038 -17.37465 -17.18562 -16.84644 -16.55883 -16.51028 -16.35990 -15.87439 -15.33127 -15.14362 -15.08607 -14.79502 -14.44705 -14.38051 -14.22767 -14.07939 -13.77140 -13.36708 -13.06270 -12.77211 -12.71648 -12.60207 -12.57041 -12.36550 -12.07355 -11.95392 -11.68097 -11.28048 -11.06545 -10.93715 -10.84868 -10.32320 -9.97336 -8.91573 -8.41812 -8.38535 -6.48750 0.19542 0.62542 1.31453 1.33462 1.46513 1.59849 1.69524 1.83835 2.13539 2.26651 2.84213 2.93607 3.00387 3.34092 3.59945 3.82283 3.86113 3.99983 4.12801 4.18046 4.29982 4.38460 4.39824 4.44131 4.56349 4.59632 4.65150 4.69894 4.74960 4.77452 5.00451 5.04143 5.07781 5.20494 5.36372 5.44005 5.44501 5.59285 5.87301 5.92183 5.95765 5.97290 6.23072 6.28914 6.43259 6.53151 7.06341 7.18305 7.52562 8.72868 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.003409 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.116425 B = 8212.503489 C = 9995.766262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.114 3.886 5 N -0.487 5.487 6 C 0.048 3.952 7 C -0.203 4.203 8 C -0.142 4.142 9 C -0.049 4.049 10 C -0.165 4.165 11 C 0.171 3.829 12 N -0.672 5.672 13 C 0.693 3.307 14 O -0.624 6.624 15 N -0.714 5.714 16 C 0.252 3.748 17 C -0.546 4.546 18 H 0.062 0.938 19 C 0.029 3.971 20 N -0.929 5.929 21 Si 0.935 3.065 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.263 1.263 25 C -0.159 4.159 26 C 0.091 3.909 27 H 0.102 0.898 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.205 0.795 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.424 0.576 39 H 0.408 0.592 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.273 0.727 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 10.817 -26.967 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.172 5.172 6 C -0.075 4.075 7 C -0.227 4.227 8 C -0.147 4.147 9 C -0.068 4.068 10 C -0.186 4.186 11 C 0.075 3.925 12 N -0.321 5.321 13 C 0.393 3.607 14 O -0.505 6.505 15 N -0.367 5.367 16 C 0.128 3.872 17 C -0.584 4.584 18 H 0.080 0.920 19 C -0.171 4.171 20 N -0.568 5.568 21 Si 0.759 3.241 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.187 1.187 25 C -0.183 4.183 26 C -0.015 4.015 27 H 0.120 0.880 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.222 0.778 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.262 0.738 39 H 0.244 0.756 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.152 9.338 -27.344 28.918 hybrid contribution -0.479 -0.345 1.186 1.325 sum -1.631 8.993 -26.159 27.709 Atomic orbital electron populations 1.22969 0.78819 1.04227 1.00911 1.87783 1.22011 1.27424 1.95623 1.22751 0.93350 0.85133 1.01082 1.21476 0.92003 0.81829 1.05536 1.43959 1.53282 1.14916 1.05050 1.22484 1.00324 0.92913 0.91761 1.22007 1.09664 0.99195 0.91878 1.19651 1.05335 0.94300 0.95416 1.20406 0.97194 0.98525 0.90699 1.20645 1.03578 0.97123 0.97304 1.17307 0.98254 0.95572 0.81361 1.42432 1.73096 1.08635 1.07951 1.16199 0.78659 0.83393 0.82417 1.90865 1.54685 1.43906 1.61022 1.45113 1.69554 1.12878 1.09160 1.18987 0.95591 0.80270 0.92390 1.21246 1.46286 0.96926 0.93923 0.92018 1.25538 0.94303 1.02265 0.95027 1.69967 1.48325 1.30061 1.08454 0.85894 0.79436 0.79422 0.79367 1.18936 1.19626 1.18732 1.19816 1.07646 1.00772 0.90111 1.18162 1.02485 0.92993 0.87862 0.87986 0.94242 0.92014 0.94785 0.90646 0.85644 0.91383 0.77777 0.80762 0.82247 0.82853 0.73777 0.75639 0.97139 0.97138 0.91759 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.40 10.70 -148.98 -1.59 -10.99 16 3 C 0.05 1.15 6.26 71.98 0.45 1.60 16 4 C 0.11 2.47 6.37 86.38 0.55 3.02 16 5 N -0.49 -11.34 2.78 -515.89 -1.44 -12.78 16 6 C 0.05 0.80 11.28 82.97 0.94 1.74 16 7 C -0.20 -3.61 11.08 23.52 0.26 -3.35 16 8 C -0.14 -3.44 6.37 -20.17 -0.13 -3.57 16 9 C -0.05 -1.03 10.04 22.21 0.22 -0.81 16 10 C -0.17 -3.80 9.88 22.15 0.22 -3.58 16 11 C 0.17 5.22 6.28 38.14 0.24 5.46 16 12 N -0.67 -20.46 5.35 -317.07 -1.69 -22.15 16 13 C 0.69 28.10 8.29 179.05 1.48 29.58 16 14 O -0.62 -30.49 14.03 -4.00 -0.06 -30.54 16 15 N -0.71 -29.56 5.55 -482.29 -2.68 -32.23 16 16 C 0.25 12.66 4.50 85.63 0.38 13.05 16 17 C -0.55 -30.38 9.83 25.60 0.25 -30.13 16 18 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 19 C 0.03 1.67 5.47 84.65 0.46 2.13 16 20 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 21 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 22 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 25 C -0.16 -5.48 8.58 22.50 0.19 -5.29 16 26 C 0.09 2.67 6.81 39.01 0.27 2.93 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 1.96 8.12 -2.38 -0.02 1.94 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.42 9.41 8.83 -92.71 -0.82 8.59 16 39 H 0.41 14.46 8.34 -92.71 -0.77 13.69 16 40 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 41 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.10 4.02 6.40 -2.91 -0.02 4.00 16 Total: -1.00 -77.15 366.34 1.16 -75.99 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.60 Total: 27.05 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.04 Total: 14.47 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -5.51 Total: -122.54 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.65 Total: -41.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -77.15 1.16 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488561434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.427 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds