Wall clock time and date at job start Tue Mar 31 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35328 * 117.00362 * 2 1 4 4 N 1.32461 * 118.98874 * 179.97438 * 3 2 1 5 5 C 1.31994 * 120.95158 * 179.97438 * 4 3 2 6 6 C 1.40324 * 118.95050 * 0.02562 * 5 4 3 7 7 C 1.47001 * 120.91570 * 180.02562 * 6 5 4 8 8 C 1.35093 * 119.99818 * 179.97438 * 7 6 5 9 9 C 1.41834 * 119.99888 * 179.97438 * 8 7 6 10 10 O 1.21774 * 119.99637 * 1.79626 * 9 8 7 11 11 N 1.34770 * 119.99946 * 181.79645 * 9 8 7 12 12 C 1.36754 * 120.00257 * 3.90161 * 11 9 8 13 13 H 1.07998 * 119.99406 * 124.56132 * 12 11 9 14 14 C 1.39084 * 119.99837 * 304.56282 * 12 11 9 15 15 N 1.31353 * 119.99784 * 168.36650 * 14 12 11 16 16 Si 1.86801 * 120.00567 * 348.36721 * 14 12 11 17 17 H 1.48493 * 109.47246 * 95.57060 * 16 14 12 18 18 H 1.48494 * 109.47326 * 215.57590 * 16 14 12 19 19 H 1.48507 * 109.46699 * 335.57093 * 16 14 12 20 20 C 1.46504 * 119.99867 * 183.90415 * 11 9 8 21 21 C 1.55237 * 110.57900 * 57.10832 * 20 11 9 22 22 C 1.54898 * 102.58634 * 203.34081 * 21 20 11 23 23 C 1.54266 * 104.31373 * 37.93324 * 22 21 20 24 24 C 1.53881 * 106.59564 * 336.32494 * 23 22 21 25 25 C 1.40336 * 118.17296 * 0.26710 * 6 5 4 26 26 N 1.31997 * 118.94659 * 359.44942 * 25 6 5 27 27 H 1.09000 * 109.47187 * 300.00058 * 1 2 3 28 28 H 1.09004 * 109.47269 * 60.00122 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.52802 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99446 * 359.97438 * 7 6 5 32 32 H 1.08003 * 120.00590 * 0.02562 * 8 7 6 33 33 H 0.96999 * 119.99844 * 180.02562 * 15 14 12 34 34 H 1.08992 * 110.43693 * 179.69509 * 20 11 9 35 35 H 1.08999 * 110.90102 * 85.05367 * 21 20 11 36 36 H 1.08995 * 110.77009 * 321.56502 * 21 20 11 37 37 H 1.09004 * 110.48626 * 279.18935 * 22 21 20 38 38 H 1.08995 * 110.48793 * 156.68017 * 22 21 20 39 39 H 1.09001 * 110.03303 * 95.60889 * 23 22 21 40 40 H 1.09003 * 110.03213 * 216.99258 * 23 22 21 41 41 H 1.09000 * 110.03173 * 119.29131 * 24 23 22 42 42 H 1.09004 * 110.02989 * 240.66235 * 24 23 22 43 43 H 1.07998 * 120.52133 * 179.70769 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3673 1.2516 0.0005 5 6 4.0065 2.4064 0.0000 6 6 3.2612 3.5954 -0.0005 7 6 3.9286 4.9052 -0.0016 8 6 3.1928 6.0381 -0.0026 9 6 3.8367 7.3019 -0.0032 10 8 5.0523 7.3657 -0.0358 11 7 3.1032 8.4319 0.0324 12 6 1.7426 8.3606 0.1495 13 1 1.2418 8.8802 0.9530 14 6 1.0037 7.6188 -0.7661 15 7 -0.2623 7.3589 -0.5316 16 14 1.8118 6.9919 -2.3293 17 1 2.2713 5.5950 -2.1232 18 1 0.8310 7.0311 -3.4435 19 1 2.9756 7.8517 -2.6639 20 6 3.7635 9.7368 -0.0544 21 6 4.6076 9.8359 -1.3535 22 6 5.6504 10.9241 -0.9963 23 6 5.9949 10.6514 0.4825 24 6 4.7952 9.8965 1.0813 25 6 1.8611 3.4997 0.0053 26 7 1.3024 2.3038 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 5.0861 2.4359 0.0000 31 1 5.0070 4.9615 -0.0016 32 1 2.1142 5.9817 -0.0022 33 1 -0.7775 6.8412 -1.1699 34 1 3.0270 10.5393 -0.0163 35 1 3.9911 10.1530 -2.1946 36 1 5.0983 8.8867 -1.5689 37 1 5.2186 11.9184 -1.1103 38 1 6.5383 10.8210 -1.6201 39 1 6.8934 10.0378 0.5496 40 1 6.1458 11.5930 1.0105 41 1 5.1114 8.9166 1.4391 42 1 4.3636 10.4713 1.9007 43 1 1.2505 4.3905 0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492646743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:37 Heat of formation + Delta-G solvation = 11.996626 kcal Electronic energy + Delta-G solvation = -26803.178389 eV Core-core repulsion = 23043.238539 eV Total energy + Delta-G solvation = -3759.939851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10721 -39.74598 -38.35978 -36.74905 -34.61812 -34.10219 -33.65941 -31.97221 -29.93505 -28.14875 -27.77852 -27.10970 -25.00463 -24.59130 -23.81849 -21.94839 -20.10076 -19.67704 -18.83932 -18.62407 -18.35179 -17.00863 -16.38310 -15.97967 -15.68254 -15.12948 -14.88949 -14.57745 -14.36624 -14.09332 -13.93594 -13.80833 -13.52450 -13.27179 -13.07573 -12.78473 -12.53692 -12.06854 -12.03896 -11.54037 -11.23393 -11.17598 -11.07514 -10.89700 -10.87325 -10.76799 -10.67229 -10.48208 -10.31967 -10.05954 -9.98116 -9.78175 -9.20198 -9.10527 -8.63681 -7.96000 -7.59497 -6.61866 -4.41667 0.58040 1.12079 2.24329 2.57856 2.99620 3.15451 3.21899 3.83849 3.96322 4.09590 4.24633 4.32265 4.62931 4.68137 4.71814 5.00427 5.09822 5.16845 5.20180 5.20438 5.22769 5.41474 5.49569 5.80285 5.84190 5.93824 6.01101 6.09496 6.11882 6.13777 6.18417 6.26255 6.37680 6.40615 6.54940 6.69405 6.79739 6.79942 6.88711 6.89800 6.97765 7.19451 7.56968 7.69491 8.08759 8.30097 8.80866 9.11731 9.57197 10.45019 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.003931 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.078328 B = 7120.319822 C = 7960.693557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.292 6.292 3 C 0.484 3.516 4 N -0.525 5.525 5 C 0.195 3.805 6 C -0.188 4.188 7 C -0.070 4.070 8 C -0.162 4.162 9 C 0.510 3.490 10 O -0.586 6.586 11 N -0.451 5.451 12 C -0.344 4.344 13 H 0.103 0.897 14 C 0.072 3.928 15 N -0.860 5.860 16 Si 0.850 3.150 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.253 1.253 20 C 0.141 3.859 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.133 4.133 25 C 0.197 3.803 26 N -0.561 5.561 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.181 0.819 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.278 0.722 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -4.727 0.100 6.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.194 6.194 3 C 0.183 3.817 4 N -0.249 5.249 5 C 0.029 3.971 6 C -0.193 4.193 7 C -0.092 4.092 8 C -0.182 4.182 9 C 0.303 3.697 10 O -0.473 6.473 11 N -0.170 5.170 12 C -0.472 4.472 13 H 0.120 0.880 14 C -0.136 4.136 15 N -0.494 5.494 16 Si 0.674 3.326 17 H -0.183 1.183 18 H -0.210 1.210 19 H -0.177 1.177 20 C 0.037 3.963 21 C -0.176 4.176 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.171 4.171 25 C 0.031 3.969 26 N -0.289 5.289 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.198 0.802 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.974 -5.971 0.038 7.173 hybrid contribution 0.056 0.695 -0.948 1.177 sum 4.030 -5.276 -0.909 6.701 Atomic orbital electron populations 1.22985 0.75772 1.03262 1.03141 1.86011 1.23316 1.22930 1.87137 1.20797 0.86256 0.84850 0.89827 1.67473 1.07445 1.30425 1.19574 1.23359 1.00513 0.84933 0.88337 1.20718 0.95392 0.96138 1.07038 1.21808 0.99885 0.88805 0.98698 1.22649 1.02570 0.93370 0.99637 1.17138 0.86741 0.85332 0.80468 1.90652 1.13619 1.88219 1.54826 1.43608 1.06737 1.03136 1.63476 1.19102 0.79533 1.35205 1.13387 0.87968 1.25770 0.95001 0.95751 0.97063 1.69650 1.07404 1.36027 1.36332 0.87276 0.80536 0.81016 0.83735 1.18278 1.20964 1.17691 1.22090 0.93651 0.86816 0.93751 1.22937 0.97244 0.99925 0.97530 1.22236 0.98628 0.98383 0.96381 1.21975 0.98586 0.99038 0.95505 1.22452 0.95412 1.01525 0.97742 1.23533 0.92298 0.94332 0.86694 1.68030 1.41173 0.99096 1.20573 0.91756 0.91839 0.88049 0.80203 0.84458 0.83958 0.91094 0.89441 0.92460 0.89797 0.92262 0.92370 0.92130 0.92841 0.89914 0.92855 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.35 101.05 1.05 1.52 16 2 O -0.29 -4.34 10.55 -17.67 -0.19 -4.53 16 3 C 0.48 8.06 8.48 -91.00 -0.77 7.29 16 4 N -0.52 -8.55 10.44 -14.32 -0.15 -8.70 16 5 C 0.20 2.83 11.10 -16.70 -0.19 2.65 16 6 C -0.19 -3.09 5.90 -104.77 -0.62 -3.71 16 7 C -0.07 -1.24 9.38 -37.15 -0.35 -1.59 16 8 C -0.16 -3.37 5.14 -39.33 -0.20 -3.57 16 9 C 0.51 11.45 5.17 -14.89 -0.08 11.37 16 10 O -0.59 -13.45 12.47 5.12 0.06 -13.38 16 11 N -0.45 -10.19 1.97 -108.92 -0.22 -10.40 16 12 C -0.34 -8.41 9.16 -15.04 -0.14 -8.55 16 13 H 0.10 2.67 8.06 -52.49 -0.42 2.24 16 14 C 0.07 1.76 3.96 -17.44 -0.07 1.69 16 15 N -0.86 -21.89 13.95 55.50 0.77 -21.12 16 16 Si 0.85 19.19 24.31 -169.99 -4.13 15.06 16 17 H -0.26 -5.55 6.14 56.52 0.35 -5.21 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.25 -5.91 7.04 56.52 0.40 -5.51 16 20 C 0.14 2.81 3.29 -66.08 -0.22 2.59 16 21 C -0.14 -2.59 6.20 -24.55 -0.15 -2.75 16 22 C -0.12 -1.79 6.82 -25.07 -0.17 -1.97 16 23 C -0.11 -1.73 6.80 -25.61 -0.17 -1.90 16 24 C -0.13 -2.38 6.04 -25.61 -0.15 -2.54 16 25 C 0.20 3.44 10.68 -16.69 -0.18 3.26 16 26 N -0.56 -9.56 9.18 -14.32 -0.13 -9.69 16 27 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.14 2.27 7.45 -52.49 -0.39 1.88 16 32 H 0.14 3.10 2.82 -52.48 -0.15 2.95 16 33 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.09 1.69 7.93 -51.93 -0.41 1.28 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.78 6.08 -51.93 -0.32 1.46 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.67 6.01 -51.93 -0.31 1.36 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.18 3.22 6.30 -52.49 -0.33 2.89 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -28.19 345.83 -6.92 -35.12 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.75 Total: 8.63 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.41 Total: 3.80 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.28 Total: -49.91 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.12 Total: -17.91 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.13 Total: 15.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.19 -6.92 -35.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492646743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.113 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds