Wall clock time and date at job start Tue Mar 31 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35328 * 117.00362 * 2 1 4 4 N 1.32461 * 118.98874 * 179.97438 * 3 2 1 5 5 C 1.31994 * 120.95158 * 179.97438 * 4 3 2 6 6 C 1.40324 * 118.95050 * 0.02562 * 5 4 3 7 7 C 1.47001 * 120.91570 * 180.02562 * 6 5 4 8 8 C 1.35093 * 119.99818 * 179.97438 * 7 6 5 9 9 C 1.41834 * 119.99888 * 179.97438 * 8 7 6 10 10 O 1.21774 * 119.99637 * 1.79626 * 9 8 7 11 11 N 1.34770 * 119.99946 * 181.79645 * 9 8 7 12 12 C 1.36754 * 120.00257 * 3.90161 * 11 9 8 13 13 H 1.07998 * 119.99406 * 124.56132 * 12 11 9 14 14 C 1.39084 * 119.99837 * 304.56282 * 12 11 9 15 15 N 1.31353 * 119.99784 * 168.36650 * 14 12 11 16 16 Si 1.86801 * 120.00567 * 348.36721 * 14 12 11 17 17 H 1.48493 * 109.47246 * 95.57060 * 16 14 12 18 18 H 1.48494 * 109.47326 * 215.57590 * 16 14 12 19 19 H 1.48507 * 109.46699 * 335.57093 * 16 14 12 20 20 C 1.46504 * 119.99867 * 183.90415 * 11 9 8 21 21 C 1.55237 * 110.57900 * 57.10832 * 20 11 9 22 22 C 1.54898 * 102.58634 * 203.34081 * 21 20 11 23 23 C 1.54266 * 104.31373 * 37.93324 * 22 21 20 24 24 C 1.53881 * 106.59564 * 336.32494 * 23 22 21 25 25 C 1.40336 * 118.17296 * 0.26710 * 6 5 4 26 26 N 1.31997 * 118.94659 * 359.44942 * 25 6 5 27 27 H 1.09000 * 109.47187 * 300.00058 * 1 2 3 28 28 H 1.09004 * 109.47269 * 60.00122 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.52802 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99446 * 359.97438 * 7 6 5 32 32 H 1.08003 * 120.00590 * 0.02562 * 8 7 6 33 33 H 0.96999 * 119.99844 * 180.02562 * 15 14 12 34 34 H 1.08992 * 110.43693 * 179.69509 * 20 11 9 35 35 H 1.08999 * 110.90102 * 85.05367 * 21 20 11 36 36 H 1.08995 * 110.77009 * 321.56502 * 21 20 11 37 37 H 1.09004 * 110.48626 * 279.18935 * 22 21 20 38 38 H 1.08995 * 110.48793 * 156.68017 * 22 21 20 39 39 H 1.09001 * 110.03303 * 95.60889 * 23 22 21 40 40 H 1.09003 * 110.03213 * 216.99258 * 23 22 21 41 41 H 1.09000 * 110.03173 * 119.29131 * 24 23 22 42 42 H 1.09004 * 110.02989 * 240.66235 * 24 23 22 43 43 H 1.07998 * 120.52133 * 179.70769 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3673 1.2516 0.0005 5 6 4.0065 2.4064 0.0000 6 6 3.2612 3.5954 -0.0005 7 6 3.9286 4.9052 -0.0016 8 6 3.1928 6.0381 -0.0026 9 6 3.8367 7.3019 -0.0032 10 8 5.0523 7.3657 -0.0358 11 7 3.1032 8.4319 0.0324 12 6 1.7426 8.3606 0.1495 13 1 1.2418 8.8802 0.9530 14 6 1.0037 7.6188 -0.7661 15 7 -0.2623 7.3589 -0.5316 16 14 1.8118 6.9919 -2.3293 17 1 2.2713 5.5950 -2.1232 18 1 0.8310 7.0311 -3.4435 19 1 2.9756 7.8517 -2.6639 20 6 3.7635 9.7368 -0.0544 21 6 4.6076 9.8359 -1.3535 22 6 5.6504 10.9241 -0.9963 23 6 5.9949 10.6514 0.4825 24 6 4.7952 9.8965 1.0813 25 6 1.8611 3.4997 0.0053 26 7 1.3024 2.3038 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 5.0861 2.4359 0.0000 31 1 5.0070 4.9615 -0.0016 32 1 2.1142 5.9817 -0.0022 33 1 -0.7775 6.8412 -1.1699 34 1 3.0270 10.5393 -0.0163 35 1 3.9911 10.1530 -2.1946 36 1 5.0983 8.8867 -1.5689 37 1 5.2186 11.9184 -1.1103 38 1 6.5383 10.8210 -1.6201 39 1 6.8934 10.0378 0.5496 40 1 6.1458 11.5930 1.0105 41 1 5.1114 8.9166 1.4391 42 1 4.3636 10.4713 1.9007 43 1 1.2505 4.3905 0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492646743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:36 Heat of formation + Delta-G solvation = -6.844912 kcal Electronic energy + Delta-G solvation = -26803.995420 eV Core-core repulsion = 23043.238539 eV Total energy + Delta-G solvation = -3760.756881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37834 -41.38300 -39.53071 -38.20295 -36.37403 -35.48564 -34.98202 -33.79438 -31.30662 -29.53210 -29.02765 -28.34409 -26.58416 -26.08910 -25.16723 -23.41865 -21.47727 -21.06674 -20.35994 -20.06760 -19.77728 -18.52967 -17.55093 -17.51062 -17.33560 -16.47979 -16.27660 -16.06304 -15.70889 -15.55276 -15.35077 -15.15364 -14.93257 -14.75447 -14.71687 -14.27082 -14.04783 -13.64119 -12.96902 -12.95224 -12.78845 -12.71229 -12.47556 -12.43042 -12.26066 -12.16786 -12.04089 -11.97576 -11.85448 -11.66316 -11.34158 -11.12465 -10.96017 -10.41711 -10.34678 -9.50939 -9.23799 -8.52725 -6.34572 -0.79441 -0.13699 0.77639 1.19291 1.30661 1.38170 1.46211 2.11498 2.39629 2.67347 2.73639 2.82416 2.89422 3.34288 3.55849 3.68515 3.74459 3.83740 3.86821 4.11103 4.31526 4.33009 4.38757 4.51306 4.55631 4.61019 4.65513 4.67942 4.71940 4.73857 4.90163 4.97583 5.01841 5.13668 5.22581 5.24497 5.35736 5.39291 5.44726 5.53233 5.57195 5.72423 5.93037 5.94937 6.40157 6.82562 6.92635 7.35036 7.80602 8.57476 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.003931 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.078328 B = 7120.319822 C = 7960.693557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.298 6.298 3 C 0.483 3.517 4 N -0.537 5.537 5 C 0.221 3.779 6 C -0.207 4.207 7 C -0.023 4.023 8 C -0.212 4.212 9 C 0.512 3.488 10 O -0.596 6.596 11 N -0.464 5.464 12 C -0.345 4.345 13 H 0.075 0.925 14 C 0.053 3.947 15 N -0.892 5.892 16 Si 0.894 3.106 17 H -0.244 1.244 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.128 3.872 21 C -0.138 4.138 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.129 4.129 25 C 0.192 3.808 26 N -0.572 5.572 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.226 0.774 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.281 0.719 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -5.755 -0.255 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.199 6.199 3 C 0.182 3.818 4 N -0.261 5.261 5 C 0.055 3.945 6 C -0.212 4.212 7 C -0.044 4.044 8 C -0.232 4.232 9 C 0.306 3.694 10 O -0.484 6.484 11 N -0.183 5.183 12 C -0.473 4.473 13 H 0.093 0.907 14 C -0.152 4.152 15 N -0.528 5.528 16 Si 0.719 3.281 17 H -0.168 1.168 18 H -0.215 1.215 19 H -0.190 1.190 20 C 0.024 3.976 21 C -0.177 4.177 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.167 4.167 25 C 0.027 3.973 26 N -0.302 5.302 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.242 0.758 31 H 0.174 0.826 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.882 -7.012 -0.310 9.158 hybrid contribution -0.554 0.812 -0.750 1.236 sum 5.328 -6.201 -1.060 8.244 Atomic orbital electron populations 1.23304 0.73756 1.05714 1.02895 1.86040 1.25312 1.22074 1.86514 1.21138 0.86705 0.85270 0.88660 1.67645 1.07268 1.30918 1.20302 1.24050 1.02191 0.83431 0.84872 1.20684 0.95035 0.96346 1.09183 1.22029 1.00492 0.88390 0.93534 1.22461 1.02141 0.93710 1.04907 1.17352 0.86691 0.85789 0.79587 1.90623 1.13810 1.88526 1.55393 1.43663 1.06019 1.04322 1.64300 1.18850 0.80577 1.35078 1.12801 0.90746 1.26042 0.95040 0.95656 0.98498 1.69708 1.08465 1.37368 1.37227 0.86611 0.79153 0.81202 0.81134 1.16810 1.21488 1.18955 1.22311 0.94152 0.85655 0.95435 1.22890 0.97904 1.00078 0.96784 1.22232 0.98111 0.97995 0.96373 1.21959 0.96944 0.99931 0.95651 1.22396 0.96062 1.00788 0.97481 1.23458 0.92982 0.94213 0.86681 1.68035 1.41451 0.99108 1.21560 0.91953 0.92115 0.84284 0.75823 0.82606 0.85364 0.90831 0.89568 0.92825 0.92356 0.90089 0.90824 0.92333 0.89920 0.92487 0.91801 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.35 113.37 1.17 1.92 16 2 O -0.30 -8.28 10.55 -86.16 -0.91 -9.19 16 3 C 0.48 15.27 8.48 180.48 1.53 16.80 16 4 N -0.54 -16.03 10.44 -312.17 -3.26 -19.29 16 5 C 0.22 5.69 11.10 85.18 0.95 6.64 16 6 C -0.21 -6.45 5.90 -19.96 -0.12 -6.56 16 7 C -0.02 -0.77 9.38 23.84 0.22 -0.55 16 8 C -0.21 -8.84 5.14 22.44 0.12 -8.72 16 9 C 0.51 23.23 5.17 85.13 0.44 23.67 16 10 O -0.60 -27.25 12.47 -4.59 -0.06 -27.30 16 11 N -0.46 -21.51 1.97 -616.70 -1.22 -22.73 16 12 C -0.34 -17.57 9.16 84.13 0.77 -16.80 16 13 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 14 C 0.05 2.69 3.96 84.97 0.34 3.02 16 15 N -0.89 -47.02 13.95 21.69 0.30 -46.72 16 16 Si 0.89 40.56 24.31 68.60 1.67 42.23 16 17 H -0.24 -10.36 6.14 99.48 0.61 -9.75 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.45 7.04 99.48 0.70 -11.75 16 20 C 0.13 5.14 3.29 46.19 0.15 5.29 16 21 C -0.14 -5.13 6.20 32.01 0.20 -4.93 16 22 C -0.11 -3.06 6.82 31.67 0.22 -2.84 16 23 C -0.11 -3.02 6.80 31.32 0.21 -2.81 16 24 C -0.13 -4.55 6.04 31.32 0.19 -4.36 16 25 C 0.19 6.61 10.68 85.18 0.91 7.52 16 26 N -0.57 -19.09 9.18 -312.16 -2.87 -21.95 16 27 H 0.06 1.26 8.09 -2.39 -0.02 1.25 16 28 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 29 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.16 4.71 7.45 -2.91 -0.02 4.69 16 32 H 0.13 5.75 2.82 -2.91 -0.01 5.74 16 33 H 0.28 13.94 8.31 -92.71 -0.77 13.16 16 34 H 0.09 3.40 7.93 -2.39 -0.02 3.38 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.46 6.08 -2.39 -0.01 2.45 16 37 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.31 6.01 -2.39 -0.01 2.29 16 42 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.17 6.14 6.30 -2.91 -0.02 6.12 16 Total: -1.00 -62.51 345.83 1.89 -60.62 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.93 Total: 27.04 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 7.30 Total: 17.29 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -7.04 Total: -110.69 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.97 Total: -36.50 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.67 Total: 42.23 kcal Total: -62.51 1.89 -60.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492646743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.776 kcal (2) G-P(sol) polarization free energy of solvation -62.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds