Wall clock time and date at job start Tue Mar 31 2020 11:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35335 * 116.99370 * 2 1 4 4 N 1.32454 * 118.99159 * 359.73135 * 3 2 1 5 5 C 1.32004 * 120.94409 * 179.70959 * 4 3 2 6 6 C 1.40295 * 118.95265 * 0.55453 * 5 4 3 7 7 C 1.47051 * 120.91243 * 179.70683 * 6 5 4 8 8 C 1.34936 * 119.99750 * 43.13737 * 7 6 5 9 9 C 1.46279 * 120.00291 * 10.21596 * 8 7 6 10 10 O 1.21723 * 119.99604 * 6.62034 * 9 8 7 11 11 N 1.34775 * 119.99987 * 186.62371 * 9 8 7 12 12 C 1.46919 * 120.63464 * 354.59538 * 11 9 8 13 13 C 1.53619 * 108.54482 * 126.36815 * 12 11 9 14 14 C 1.53047 * 109.23856 * 54.86039 * 13 12 11 15 15 C 1.50703 * 109.44876 * 178.49891 * 14 13 12 16 16 H 1.07993 * 120.00159 * 120.05996 * 15 14 13 17 17 C 1.37882 * 119.99692 * 300.06052 * 15 14 13 18 18 N 1.31518 * 119.99531 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00203 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47186 * 89.99861 * 19 17 15 21 21 H 1.48502 * 109.47041 * 209.99974 * 19 17 15 22 22 H 1.48505 * 109.46992 * 329.99505 * 19 17 15 23 23 C 1.53036 * 109.53818 * 298.51137 * 14 13 12 24 24 C 1.46932 * 120.62987 * 174.88213 * 11 9 8 25 25 C 1.40298 * 118.18066 * 359.72574 * 6 5 4 26 26 N 1.31998 * 118.95465 * 0.02562 * 25 6 5 27 27 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46878 * 299.99213 * 1 2 3 29 29 H 1.08998 * 109.47353 * 60.00134 * 1 2 3 30 30 H 1.07999 * 120.52732 * 180.27957 * 5 4 3 31 31 H 1.07991 * 119.99779 * 223.14798 * 7 6 5 32 32 H 1.07997 * 120.00206 * 190.20674 * 8 7 6 33 33 H 1.08998 * 109.59053 * 246.20811 * 12 11 9 34 34 H 1.09009 * 109.58215 * 6.63173 * 12 11 9 35 35 H 1.09004 * 109.63748 * 294.87091 * 13 12 11 36 36 H 1.09001 * 109.43734 * 174.72900 * 13 12 11 37 37 H 1.08999 * 109.46038 * 58.53639 * 14 13 12 38 38 H 0.96999 * 119.99592 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.50179 * 301.41040 * 23 14 13 40 40 H 1.09002 * 109.49675 * 181.31894 * 23 14 13 41 41 H 1.09000 * 109.58331 * 353.36829 * 24 11 9 42 42 H 1.08997 * 109.58554 * 113.64931 * 24 11 9 43 43 H 1.08001 * 120.52322 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2059 0.0000 4 7 1.3024 2.3038 -0.0054 5 6 1.8611 3.4998 0.0001 6 6 3.2607 3.5955 0.0000 7 6 3.9283 4.9058 -0.0004 8 6 3.4748 5.8942 0.7983 9 6 2.4704 5.6050 1.8217 10 8 2.1322 4.4552 2.0346 11 7 1.9196 6.6115 2.5288 12 6 2.4005 7.9903 2.3677 13 6 1.2000 8.8914 2.0407 14 6 0.1320 8.7211 3.1236 15 6 -1.0326 9.6306 2.8273 16 1 -2.0165 9.2143 2.6698 17 6 -0.8417 10.9944 2.7571 18 7 -1.8579 11.7880 2.4980 19 14 0.8603 11.7145 3.0287 20 1 1.5755 11.7979 1.7300 21 1 0.7351 13.0740 3.6130 22 1 1.6233 10.8442 3.9592 23 6 -0.3483 7.2683 3.1448 24 6 0.8308 6.3497 3.4801 25 6 4.0061 2.4069 -0.0001 26 7 3.3672 1.2519 -0.0006 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.2504 4.3905 0.0001 31 1 4.7814 5.0769 -0.6401 32 1 3.8534 6.8990 0.6822 33 1 2.8701 8.3241 3.2929 34 1 3.1233 8.0323 1.5527 35 1 0.7845 8.6111 1.0727 36 1 1.5248 9.9314 2.0104 37 1 0.5553 8.9779 4.0947 38 1 -1.7236 12.7474 2.4482 39 1 -0.7493 7.0032 2.1665 40 1 -1.1256 7.1531 3.9003 41 1 0.5176 5.3088 3.3995 42 1 1.1759 6.5499 4.4945 43 1 5.0858 2.4365 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492679915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:29 Heat of formation + Delta-G solvation = 20.163619 kcal Electronic energy + Delta-G solvation = -26509.414012 eV Core-core repulsion = 22749.828308 eV Total energy + Delta-G solvation = -3759.585703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27747 -40.04289 -38.44704 -37.27424 -34.30555 -33.87513 -33.63041 -31.72201 -30.82768 -29.90807 -27.64419 -26.63703 -25.00642 -24.25127 -23.15439 -22.78230 -21.57481 -19.62392 -18.91841 -18.38664 -18.12184 -17.37368 -16.76153 -16.44186 -15.94794 -15.41895 -14.93707 -14.82991 -14.51844 -14.34855 -14.16714 -13.72563 -13.64666 -13.42601 -13.35659 -12.86665 -12.66723 -12.55353 -12.16225 -12.13980 -11.92553 -11.55219 -11.20034 -11.11026 -10.88971 -10.82425 -10.30650 -10.26901 -10.21261 -9.85511 -9.70610 -9.40336 -9.16185 -9.12518 -8.63797 -8.33621 -8.27558 -6.15993 -4.15752 0.40643 1.12091 1.60486 2.50863 3.13789 3.19317 3.25546 3.28436 3.31470 3.77205 4.03709 4.30243 4.44538 4.51315 4.55263 4.65685 4.91903 5.07136 5.09314 5.13472 5.19736 5.35076 5.41509 5.46999 5.54218 5.66499 5.72140 5.74877 5.89089 5.90318 6.03870 6.07709 6.10717 6.22129 6.52612 6.55517 6.65834 6.67076 6.79914 7.09258 7.11261 7.39288 7.58602 7.66362 8.03988 8.25545 8.43114 8.88448 9.45499 10.97404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.003124 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.803951 B = 8960.161609 C = 9672.582970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.293 6.293 3 C 0.501 3.499 4 N -0.573 5.573 5 C 0.274 3.726 6 C -0.216 4.216 7 C -0.016 4.016 8 C -0.206 4.206 9 C 0.538 3.462 10 O -0.553 6.553 11 N -0.590 5.590 12 C 0.097 3.903 13 C -0.135 4.135 14 C 0.015 3.985 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.112 4.112 24 C 0.108 3.892 25 C 0.197 3.803 26 N -0.537 5.537 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 -14.901 -5.712 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.195 6.195 3 C 0.200 3.800 4 N -0.302 5.302 5 C 0.108 3.892 6 C -0.221 4.221 7 C -0.038 4.038 8 C -0.226 4.226 9 C 0.329 3.671 10 O -0.434 6.434 11 N -0.320 5.320 12 C -0.025 4.025 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.150 4.150 24 C -0.014 4.014 25 C 0.033 3.967 26 N -0.262 5.262 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.491 -16.530 -5.585 20.893 hybrid contribution 1.052 1.866 0.250 2.157 sum 12.543 -14.664 -5.336 20.021 Atomic orbital electron populations 1.22982 0.75691 1.03290 1.03104 1.86015 1.23403 1.23154 1.86899 1.20772 0.86201 0.84760 0.88271 1.68003 1.40930 0.99099 1.22192 1.22937 0.91258 0.93749 0.81297 1.20425 0.95793 0.95498 1.10350 1.21993 0.96234 0.89970 0.95559 1.23231 1.01059 1.00355 0.97985 1.18408 0.81773 0.84769 0.82170 1.90780 1.63680 1.20025 1.68946 1.48140 1.35295 1.07644 1.40909 1.22148 0.97832 0.81065 1.01451 1.22472 0.95356 0.97385 1.02112 1.19131 0.94478 0.92771 0.94056 1.21037 0.94958 0.90618 1.48596 0.90833 1.25059 0.96626 0.97174 0.94505 1.69900 1.30653 1.04140 1.49072 0.86864 0.85135 0.77973 0.78378 1.20502 1.22443 1.19002 1.21823 0.95692 0.95835 1.01674 1.21799 0.87335 1.00874 0.91352 1.23120 1.00031 0.85105 0.88473 1.67450 1.07428 1.30218 1.21145 0.88053 0.91725 0.91880 0.82046 0.84125 0.84115 0.91569 0.90327 0.91454 0.92350 0.95409 0.92604 0.92248 0.91264 0.89837 0.91980 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.35 101.05 1.05 1.49 16 2 O -0.29 -4.03 10.55 -17.70 -0.19 -4.22 16 3 C 0.50 7.52 8.48 -91.00 -0.77 6.75 16 4 N -0.57 -8.56 9.18 -14.33 -0.13 -8.69 16 5 C 0.27 3.81 7.84 -16.70 -0.13 3.68 16 6 C -0.22 -2.53 4.60 -104.78 -0.48 -3.02 16 7 C -0.02 -0.15 9.86 -37.18 -0.37 -0.51 16 8 C -0.21 -2.17 9.28 -37.52 -0.35 -2.52 16 9 C 0.54 7.75 6.70 -13.03 -0.09 7.66 16 10 O -0.55 -9.30 11.43 5.17 0.06 -9.24 16 11 N -0.59 -8.92 2.97 -174.20 -0.52 -9.44 16 12 C 0.10 1.42 6.37 -3.49 -0.02 1.39 16 13 C -0.14 -2.52 4.86 -26.39 -0.13 -2.65 16 14 C 0.01 0.31 1.65 -91.73 -0.15 0.16 16 15 C -0.51 -13.59 9.14 -34.44 -0.31 -13.90 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 18 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.89 20.35 24.38 -169.99 -4.14 16.21 16 20 H -0.28 -6.10 6.86 56.52 0.39 -5.71 16 21 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -5.70 6.53 56.52 0.37 -5.33 16 23 C -0.11 -2.07 5.30 -26.62 -0.14 -2.21 16 24 C 0.11 1.74 6.42 -3.71 -0.02 1.71 16 25 C 0.20 2.25 11.10 -16.71 -0.19 2.06 16 26 N -0.54 -7.71 10.44 -14.33 -0.15 -7.85 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.16 2.22 7.00 -52.49 -0.37 1.86 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 1.17 5.86 -52.49 -0.31 0.87 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.89 5.30 -51.92 -0.28 0.62 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.16 3.24 -51.93 -0.17 0.99 16 37 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.36 7.03 -51.93 -0.37 0.99 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -33.05 343.88 -7.00 -40.05 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.68 Total: 1.93 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.21 Total: 1.85 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.02 Total: -51.77 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.13 Total: -13.46 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.14 Total: 16.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.05 -7.00 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492679915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.218 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds