Wall clock time and date at job start Tue Mar 31 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35335 * 116.99370 * 2 1 4 4 N 1.32454 * 118.99159 * 359.73135 * 3 2 1 5 5 C 1.32004 * 120.94409 * 179.70959 * 4 3 2 6 6 C 1.40295 * 118.95265 * 0.55453 * 5 4 3 7 7 C 1.47051 * 120.91243 * 179.70683 * 6 5 4 8 8 C 1.34936 * 119.99750 * 43.13737 * 7 6 5 9 9 C 1.46279 * 120.00291 * 10.21596 * 8 7 6 10 10 O 1.21723 * 119.99604 * 6.62034 * 9 8 7 11 11 N 1.34775 * 119.99987 * 186.62371 * 9 8 7 12 12 C 1.46919 * 120.63464 * 354.59538 * 11 9 8 13 13 C 1.53619 * 108.54482 * 126.36815 * 12 11 9 14 14 C 1.53047 * 109.23856 * 54.86039 * 13 12 11 15 15 C 1.50703 * 109.44876 * 178.49891 * 14 13 12 16 16 H 1.07993 * 120.00159 * 120.05996 * 15 14 13 17 17 C 1.37882 * 119.99692 * 300.06052 * 15 14 13 18 18 N 1.31518 * 119.99531 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00203 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47186 * 89.99861 * 19 17 15 21 21 H 1.48502 * 109.47041 * 209.99974 * 19 17 15 22 22 H 1.48505 * 109.46992 * 329.99505 * 19 17 15 23 23 C 1.53036 * 109.53818 * 298.51137 * 14 13 12 24 24 C 1.46932 * 120.62987 * 174.88213 * 11 9 8 25 25 C 1.40298 * 118.18066 * 359.72574 * 6 5 4 26 26 N 1.31998 * 118.95465 * 0.02562 * 25 6 5 27 27 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46878 * 299.99213 * 1 2 3 29 29 H 1.08998 * 109.47353 * 60.00134 * 1 2 3 30 30 H 1.07999 * 120.52732 * 180.27957 * 5 4 3 31 31 H 1.07991 * 119.99779 * 223.14798 * 7 6 5 32 32 H 1.07997 * 120.00206 * 190.20674 * 8 7 6 33 33 H 1.08998 * 109.59053 * 246.20811 * 12 11 9 34 34 H 1.09009 * 109.58215 * 6.63173 * 12 11 9 35 35 H 1.09004 * 109.63748 * 294.87091 * 13 12 11 36 36 H 1.09001 * 109.43734 * 174.72900 * 13 12 11 37 37 H 1.08999 * 109.46038 * 58.53639 * 14 13 12 38 38 H 0.96999 * 119.99592 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.50179 * 301.41040 * 23 14 13 40 40 H 1.09002 * 109.49675 * 181.31894 * 23 14 13 41 41 H 1.09000 * 109.58331 * 353.36829 * 24 11 9 42 42 H 1.08997 * 109.58554 * 113.64931 * 24 11 9 43 43 H 1.08001 * 120.52322 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2059 0.0000 4 7 1.3024 2.3038 -0.0054 5 6 1.8611 3.4998 0.0001 6 6 3.2607 3.5955 0.0000 7 6 3.9283 4.9058 -0.0004 8 6 3.4748 5.8942 0.7983 9 6 2.4704 5.6050 1.8217 10 8 2.1322 4.4552 2.0346 11 7 1.9196 6.6115 2.5288 12 6 2.4005 7.9903 2.3677 13 6 1.2000 8.8914 2.0407 14 6 0.1320 8.7211 3.1236 15 6 -1.0326 9.6306 2.8273 16 1 -2.0165 9.2143 2.6698 17 6 -0.8417 10.9944 2.7571 18 7 -1.8579 11.7880 2.4980 19 14 0.8603 11.7145 3.0287 20 1 1.5755 11.7979 1.7300 21 1 0.7351 13.0740 3.6130 22 1 1.6233 10.8442 3.9592 23 6 -0.3483 7.2683 3.1448 24 6 0.8308 6.3497 3.4801 25 6 4.0061 2.4069 -0.0001 26 7 3.3672 1.2519 -0.0006 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.2504 4.3905 0.0001 31 1 4.7814 5.0769 -0.6401 32 1 3.8534 6.8990 0.6822 33 1 2.8701 8.3241 3.2929 34 1 3.1233 8.0323 1.5527 35 1 0.7845 8.6111 1.0727 36 1 1.5248 9.9314 2.0104 37 1 0.5553 8.9779 4.0947 38 1 -1.7236 12.7474 2.4482 39 1 -0.7493 7.0032 2.1665 40 1 -1.1256 7.1531 3.9003 41 1 0.5176 5.3088 3.3995 42 1 1.1759 6.5499 4.4945 43 1 5.0858 2.4365 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492679915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:28 Heat of formation + Delta-G solvation = -5.447434 kcal Electronic energy + Delta-G solvation = -26510.524590 eV Core-core repulsion = 22749.828308 eV Total energy + Delta-G solvation = -3760.696282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25201 -41.17020 -39.44349 -38.57399 -35.39216 -35.14331 -34.82025 -33.47291 -32.17782 -30.88333 -28.60626 -28.13629 -26.05665 -25.33530 -24.40356 -24.17735 -22.78011 -21.00515 -19.88020 -19.51685 -19.08348 -18.85685 -18.34366 -17.42765 -17.04148 -16.64799 -16.41612 -15.84747 -15.58902 -15.42018 -15.26807 -14.97769 -14.91012 -14.60112 -14.43434 -14.36994 -13.96228 -13.81129 -13.67668 -13.31149 -12.93180 -12.78926 -12.46830 -12.29406 -12.13073 -12.09276 -11.91376 -11.78353 -11.49836 -11.21434 -11.05838 -11.01694 -10.77353 -10.60979 -10.12175 -9.54027 -9.23759 -8.26959 -6.32557 -0.49067 0.17578 0.71975 1.33225 1.41864 1.52260 1.61512 2.09748 2.30410 2.36606 2.79582 3.06419 3.08249 3.58637 3.62383 3.72784 3.78663 4.03471 4.09723 4.13686 4.24304 4.27941 4.32780 4.36200 4.44478 4.51092 4.63607 4.69378 4.73115 4.78389 4.81249 4.95152 5.06342 5.09638 5.14111 5.24178 5.33028 5.44723 5.60508 5.68498 5.70297 5.76165 6.14648 6.32265 6.50004 6.74858 7.05345 7.18228 7.33178 8.90314 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.003124 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.803951 B = 8960.161609 C = 9672.582970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.308 6.308 3 C 0.481 3.519 4 N -0.592 5.592 5 C 0.253 3.747 6 C -0.215 4.215 7 C 0.009 3.991 8 C -0.218 4.218 9 C 0.533 3.467 10 O -0.584 6.584 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.133 4.133 14 C 0.014 3.986 15 C -0.522 4.522 16 H 0.023 0.977 17 C 0.004 3.996 18 N -0.956 5.956 19 Si 0.954 3.046 20 H -0.254 1.254 21 H -0.307 1.307 22 H -0.235 1.235 23 C -0.105 4.105 24 C 0.119 3.881 25 C 0.198 3.802 26 N -0.556 5.556 27 H 0.134 0.866 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.154 0.846 31 H 0.193 0.807 32 H 0.173 0.827 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.265 0.735 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.914 -15.110 -6.326 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.210 6.210 3 C 0.179 3.821 4 N -0.322 5.322 5 C 0.087 3.913 6 C -0.220 4.220 7 C -0.012 4.012 8 C -0.238 4.238 9 C 0.326 3.674 10 O -0.467 6.467 11 N -0.328 5.328 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.005 4.005 15 C -0.560 4.560 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.596 5.596 19 Si 0.780 3.220 20 H -0.180 1.180 21 H -0.235 1.235 22 H -0.158 1.158 23 C -0.143 4.143 24 C -0.003 4.003 25 C 0.034 3.966 26 N -0.282 5.282 27 H 0.152 0.848 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.210 0.790 32 H 0.190 0.810 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 16.220 -16.763 -6.209 24.138 hybrid contribution -0.594 1.831 0.420 1.970 sum 15.626 -14.932 -5.790 22.375 Atomic orbital electron populations 1.23183 0.74179 1.05275 1.02505 1.85997 1.24994 1.23065 1.86938 1.21024 0.86764 0.85051 0.89225 1.67932 1.41704 0.99650 1.22928 1.23019 0.92698 0.93191 0.82354 1.20747 0.94886 0.97372 1.08963 1.22450 0.96272 0.87525 0.94928 1.23294 1.00482 1.02289 0.97725 1.19139 0.81968 0.84011 0.82315 1.90788 1.64863 1.21309 1.69748 1.48190 1.35169 1.08379 1.41013 1.22185 0.96312 0.79380 1.03822 1.22301 0.96214 0.98280 1.00297 1.19088 0.93528 0.92773 0.95090 1.21386 0.94949 0.91838 1.47859 0.95864 1.26061 1.01520 0.97538 0.94148 1.70089 1.33735 1.04486 1.51336 0.85765 0.79722 0.76619 0.79880 1.17953 1.23524 1.15845 1.21680 0.96826 0.95221 1.00581 1.21531 0.86879 0.99512 0.92412 1.23894 1.01843 0.84050 0.86769 1.67522 1.07195 1.31824 1.21708 0.84763 0.92856 0.91899 0.82901 0.79004 0.80961 0.90220 0.85991 0.92402 0.92833 0.95235 0.92672 0.93880 0.92204 0.90489 0.90804 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.35 113.37 1.17 2.04 16 2 O -0.31 -8.55 10.55 -86.24 -0.91 -9.46 16 3 C 0.48 14.44 8.48 180.48 1.53 15.98 16 4 N -0.59 -17.94 9.18 -312.19 -2.87 -20.81 16 5 C 0.25 6.88 7.84 85.17 0.67 7.55 16 6 C -0.21 -4.43 4.60 -19.96 -0.09 -4.52 16 7 C 0.01 0.11 9.86 23.82 0.24 0.35 16 8 C -0.22 -3.50 9.28 23.60 0.22 -3.28 16 9 C 0.53 13.83 6.70 86.33 0.58 14.41 16 10 O -0.58 -18.88 11.43 -4.42 -0.05 -18.94 16 11 N -0.60 -16.45 2.97 -823.24 -2.44 -18.89 16 12 C 0.10 2.57 6.37 86.51 0.55 3.13 16 13 C -0.13 -4.63 4.86 30.82 0.15 -4.48 16 14 C 0.01 0.59 1.65 -11.51 -0.02 0.58 16 15 C -0.52 -28.72 9.14 25.60 0.23 -28.48 16 16 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 17 C 0.00 0.20 5.45 84.66 0.46 0.66 16 18 N -0.96 -58.83 13.96 21.45 0.30 -58.53 16 19 Si 0.95 41.15 24.38 68.60 1.67 42.83 16 20 H -0.25 -9.95 6.86 99.48 0.68 -9.26 16 21 H -0.31 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.24 -8.93 6.53 99.48 0.65 -8.28 16 23 C -0.10 -3.95 5.30 30.67 0.16 -3.78 16 24 C 0.12 3.72 6.42 86.36 0.55 4.27 16 25 C 0.20 3.91 11.10 85.17 0.95 4.86 16 26 N -0.56 -15.26 10.44 -312.18 -3.26 -18.52 16 27 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.05 1.16 8.09 -2.39 -0.02 1.14 16 29 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.15 4.25 7.00 -2.91 -0.02 4.23 16 31 H 0.19 0.55 8.06 -2.92 -0.02 0.52 16 32 H 0.17 1.67 5.86 -2.91 -0.02 1.65 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.12 1.98 5.30 -2.38 -0.01 1.96 16 35 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.05 1.93 3.24 -2.39 -0.01 1.92 16 37 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 2.51 7.03 -2.39 -0.02 2.49 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.22 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -78.38 343.88 0.75 -77.64 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.95 Total: 15.42 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 7.35 Total: 9.26 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -8.27 Total: -116.74 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.96 Total: -28.40 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.67 Total: 42.83 kcal Total: -78.38 0.75 -77.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492679915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.188 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds