Wall clock time and date at job start Tue Mar 31 2020 11:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35329 * 116.99994 * 2 1 4 4 N 1.32457 * 118.98688 * 180.02562 * 3 2 1 5 5 C 1.32002 * 120.94382 * 179.97438 * 4 3 2 6 6 C 1.40290 * 118.95512 * 0.02562 * 5 4 3 7 7 C 1.47045 * 120.91132 * 180.02562 * 6 5 4 8 8 C 1.34947 * 119.99974 * 179.97438 * 7 6 5 9 9 C 1.46273 * 119.99849 * 179.97438 * 8 7 6 10 10 O 1.21717 * 120.00142 * 355.01629 * 9 8 7 11 11 N 1.34776 * 120.00281 * 175.29377 * 9 8 7 12 12 C 1.46935 * 120.62819 * 4.67248 * 11 9 8 13 13 C 1.53624 * 108.53971 * 126.36864 * 12 11 9 14 14 C 1.53034 * 109.24100 * 54.86157 * 13 12 11 15 15 C 1.50704 * 109.45212 * 178.49408 * 14 13 12 16 16 H 1.07996 * 120.00100 * 120.05291 * 15 14 13 17 17 C 1.37883 * 119.99517 * 300.06289 * 15 14 13 18 18 N 1.31516 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47345 * 60.00123 * 19 17 15 21 21 H 1.48506 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47602 * 299.99887 * 19 17 15 23 23 C 1.53042 * 109.53789 * 298.50807 * 14 13 12 24 24 C 1.46923 * 120.63430 * 184.95872 * 11 9 8 25 25 C 1.40298 * 118.18218 * 0.26700 * 6 5 4 26 26 N 1.32000 * 118.95011 * 359.44967 * 25 6 5 27 27 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46728 * 300.00153 * 1 2 3 29 29 H 1.09000 * 109.46886 * 59.99784 * 1 2 3 30 30 H 1.08000 * 120.52605 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.99951 * 359.97438 * 7 6 5 32 32 H 1.08001 * 120.00075 * 359.97438 * 8 7 6 33 33 H 1.09000 * 109.58670 * 246.20913 * 12 11 9 34 34 H 1.09006 * 109.58335 * 6.63067 * 12 11 9 35 35 H 1.09002 * 109.63513 * 294.86717 * 13 12 11 36 36 H 1.09006 * 109.42502 * 174.72361 * 13 12 11 37 37 H 1.09006 * 109.46507 * 58.52828 * 14 13 12 38 38 H 0.96992 * 119.99659 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49328 * 301.41251 * 23 14 13 40 40 H 1.09008 * 109.49709 * 181.32014 * 23 14 13 41 41 H 1.08993 * 109.58962 * 353.37099 * 24 11 9 42 42 H 1.09004 * 109.58786 * 113.65686 * 24 11 9 43 43 H 1.07996 * 120.52512 * 179.73282 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 7 3.3672 1.2517 -0.0005 5 6 4.0063 2.4067 -0.0010 6 6 3.2611 3.5953 -0.0005 7 6 3.9287 4.9055 -0.0016 8 6 3.1937 6.0372 -0.0016 9 6 3.8578 7.3405 -0.0021 10 8 5.0698 7.4060 0.0890 11 7 3.1273 8.4691 -0.0979 12 6 1.6591 8.4126 -0.0995 13 6 1.1329 9.3498 0.9981 14 6 1.7078 10.7516 0.7824 15 6 1.1654 11.6838 1.8351 16 1 1.8413 12.1888 2.5092 17 6 -0.1938 11.8918 1.9376 18 7 -1.0169 11.2770 1.1164 19 14 -0.8661 13.0466 3.2427 20 1 -0.3097 14.4075 3.0337 21 1 -2.3469 13.0973 3.1436 22 1 -0.4761 12.5538 4.5882 23 6 3.2339 10.7002 0.8843 24 6 3.7840 9.7787 -0.2088 25 6 1.8614 3.4997 0.0063 26 7 1.3026 2.3039 0.0009 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 5.0859 2.4363 -0.0019 31 1 5.0072 4.9620 -0.0025 32 1 2.1152 5.9807 -0.0012 33 1 1.2821 8.7342 -1.0704 34 1 1.3325 7.3922 0.1018 35 1 1.4392 8.9774 1.9756 36 1 0.0448 9.3913 0.9485 37 1 1.4218 11.1135 -0.2052 38 1 -1.9730 11.4231 1.1888 39 1 3.5203 10.3151 1.8630 40 1 3.6412 11.7029 0.7540 41 1 4.8597 9.6603 -0.0797 42 1 3.5787 10.2085 -1.1893 43 1 1.2508 4.3905 0.0113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492679916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:32 Heat of formation + Delta-G solvation = -0.896205 kcal Electronic energy + Delta-G solvation = -25470.436966 eV Core-core repulsion = 21709.938040 eV Total energy + Delta-G solvation = -3760.498926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54835 -39.75850 -38.73530 -36.92055 -34.72135 -34.15533 -33.56196 -31.49555 -30.38939 -29.82645 -27.85611 -26.37895 -25.34794 -24.49930 -23.12378 -22.51456 -21.32279 -19.60049 -19.18696 -18.73869 -17.71582 -17.28958 -16.75230 -16.30426 -15.64265 -15.49523 -14.91247 -14.82573 -14.70259 -14.53309 -14.34377 -14.00285 -13.51091 -13.22531 -12.92612 -12.81335 -12.39959 -12.37572 -12.23346 -11.91019 -11.57896 -11.49282 -11.33614 -11.31783 -10.95996 -10.71107 -10.56161 -10.43988 -10.16717 -9.77775 -9.56273 -9.50555 -9.21827 -8.98082 -8.61594 -8.41785 -8.02405 -6.07522 -4.13516 0.07555 0.68576 1.71617 2.20640 3.27008 3.31832 3.33465 3.35072 3.39143 3.60551 3.62453 4.11913 4.26740 4.37458 4.42678 4.49005 4.83967 4.91041 4.94593 5.10796 5.20524 5.22395 5.32018 5.54930 5.70898 5.74400 5.86573 5.99771 6.08037 6.10650 6.15271 6.23081 6.31603 6.40563 6.60546 6.75648 6.84952 6.98820 7.08855 7.22032 7.61364 7.66594 7.85209 7.86829 7.98676 8.35562 8.46935 8.89623 9.51749 10.97996 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002641 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.454864 B =10601.419195 C =12040.744888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.289 6.289 3 C 0.498 3.502 4 N -0.524 5.524 5 C 0.209 3.791 6 C -0.208 4.208 7 C -0.027 4.027 8 C -0.190 4.190 9 C 0.541 3.459 10 O -0.561 6.561 11 N -0.592 5.592 12 C 0.100 3.900 13 C -0.124 4.124 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.111 3.889 25 C 0.203 3.797 26 N -0.563 5.563 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.184 0.816 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -17.895 -4.423 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.190 6.190 3 C 0.197 3.803 4 N -0.248 5.248 5 C 0.042 3.958 6 C -0.213 4.213 7 C -0.048 4.048 8 C -0.211 4.211 9 C 0.331 3.669 10 O -0.443 6.443 11 N -0.323 5.323 12 C -0.022 4.022 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.162 4.162 24 C -0.011 4.011 25 C 0.037 3.963 26 N -0.292 5.292 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.201 0.799 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.589 -19.105 -4.422 19.936 hybrid contribution -0.516 1.617 0.750 1.856 sum 3.072 -17.489 -3.672 18.132 Atomic orbital electron populations 1.23048 0.75329 1.03710 1.03170 1.86059 1.23655 1.22731 1.86539 1.20873 0.86235 0.84889 0.88330 1.67553 1.07434 1.30373 1.19437 1.23458 1.00770 0.84839 0.86706 1.20644 0.95523 0.95904 1.09273 1.21905 1.00423 0.88731 0.93738 1.23164 1.00709 0.92659 1.04551 1.18141 0.86782 0.84637 0.77320 1.90762 1.13985 1.87610 1.51969 1.48152 1.07848 1.06244 1.70082 1.22239 0.77809 1.00635 1.01467 1.22115 1.04159 0.95534 0.94463 1.18639 0.88390 0.92477 0.97531 1.21168 0.91773 1.25598 1.16522 0.92733 1.24954 0.97105 0.95935 0.95938 1.69814 1.03096 1.42798 1.37421 0.86674 0.77724 0.81502 0.82203 1.20295 1.21301 1.20333 1.22009 0.99860 0.97402 0.96880 1.21724 0.97601 0.82210 0.99563 1.23404 0.91916 0.94452 0.86535 1.68053 1.41163 0.99129 1.20846 0.87739 0.91629 0.91658 0.79917 0.83995 0.85091 0.91726 0.91386 0.94127 0.87692 0.95423 0.92901 0.92889 0.92080 0.90214 0.92063 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.35 101.05 1.05 1.35 16 2 O -0.29 -3.17 10.55 -17.68 -0.19 -3.36 16 3 C 0.50 5.92 8.48 -91.00 -0.77 5.15 16 4 N -0.52 -6.13 10.44 -14.33 -0.15 -6.28 16 5 C 0.21 1.93 11.10 -16.71 -0.19 1.74 16 6 C -0.21 -2.00 5.90 -104.78 -0.62 -2.62 16 7 C -0.03 -0.28 9.49 -37.18 -0.35 -0.63 16 8 C -0.19 -2.33 8.75 -37.52 -0.33 -2.65 16 9 C 0.54 8.86 7.61 -13.03 -0.10 8.76 16 10 O -0.56 -10.66 15.66 5.17 0.08 -10.58 16 11 N -0.59 -10.10 2.97 -174.19 -0.52 -10.62 16 12 C 0.10 1.66 6.34 -3.48 -0.02 1.64 16 13 C -0.12 -2.61 5.17 -26.39 -0.14 -2.74 16 14 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 15 C -0.51 -13.34 8.56 -34.44 -0.29 -13.63 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.83 11.31 55.43 0.63 -23.20 16 19 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 24 C 0.11 1.96 6.44 -3.71 -0.02 1.93 16 25 C 0.20 2.00 10.68 -16.71 -0.18 1.82 16 26 N -0.56 -6.28 9.18 -14.33 -0.13 -6.41 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.45 7.53 -52.49 -0.40 1.06 16 32 H 0.13 1.34 3.99 -52.49 -0.21 1.13 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.91 5.36 -51.93 -0.28 0.64 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 2.46 6.03 -51.93 -0.31 2.14 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.18 1.38 6.30 -52.49 -0.33 1.05 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -31.23 355.98 -7.98 -39.21 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.65 Total: 0.43 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.39 Total: -0.04 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.17 Total: -46.51 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.11 Total: -13.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.23 -7.98 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492679916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.311 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds