Wall clock time and date at job start Tue Mar 31 2020 11:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35329 * 116.99994 * 2 1 4 4 N 1.32457 * 118.98688 * 180.02562 * 3 2 1 5 5 C 1.32002 * 120.94382 * 179.97438 * 4 3 2 6 6 C 1.40290 * 118.95512 * 0.02562 * 5 4 3 7 7 C 1.47045 * 120.91132 * 180.02562 * 6 5 4 8 8 C 1.34947 * 119.99974 * 179.97438 * 7 6 5 9 9 C 1.46273 * 119.99849 * 179.97438 * 8 7 6 10 10 O 1.21717 * 120.00142 * 355.01629 * 9 8 7 11 11 N 1.34776 * 120.00281 * 175.29377 * 9 8 7 12 12 C 1.46935 * 120.62819 * 4.67248 * 11 9 8 13 13 C 1.53624 * 108.53971 * 126.36864 * 12 11 9 14 14 C 1.53034 * 109.24100 * 54.86157 * 13 12 11 15 15 C 1.50704 * 109.45212 * 178.49408 * 14 13 12 16 16 H 1.07996 * 120.00100 * 120.05291 * 15 14 13 17 17 C 1.37883 * 119.99517 * 300.06289 * 15 14 13 18 18 N 1.31516 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47345 * 60.00123 * 19 17 15 21 21 H 1.48506 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47602 * 299.99887 * 19 17 15 23 23 C 1.53042 * 109.53789 * 298.50807 * 14 13 12 24 24 C 1.46923 * 120.63430 * 184.95872 * 11 9 8 25 25 C 1.40298 * 118.18218 * 0.26700 * 6 5 4 26 26 N 1.32000 * 118.95011 * 359.44967 * 25 6 5 27 27 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46728 * 300.00153 * 1 2 3 29 29 H 1.09000 * 109.46886 * 59.99784 * 1 2 3 30 30 H 1.08000 * 120.52605 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.99951 * 359.97438 * 7 6 5 32 32 H 1.08001 * 120.00075 * 359.97438 * 8 7 6 33 33 H 1.09000 * 109.58670 * 246.20913 * 12 11 9 34 34 H 1.09006 * 109.58335 * 6.63067 * 12 11 9 35 35 H 1.09002 * 109.63513 * 294.86717 * 13 12 11 36 36 H 1.09006 * 109.42502 * 174.72361 * 13 12 11 37 37 H 1.09006 * 109.46507 * 58.52828 * 14 13 12 38 38 H 0.96992 * 119.99659 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49328 * 301.41251 * 23 14 13 40 40 H 1.09008 * 109.49709 * 181.32014 * 23 14 13 41 41 H 1.08993 * 109.58962 * 353.37099 * 24 11 9 42 42 H 1.09004 * 109.58786 * 113.65686 * 24 11 9 43 43 H 1.07996 * 120.52512 * 179.73282 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 7 3.3672 1.2517 -0.0005 5 6 4.0063 2.4067 -0.0010 6 6 3.2611 3.5953 -0.0005 7 6 3.9287 4.9055 -0.0016 8 6 3.1937 6.0372 -0.0016 9 6 3.8578 7.3405 -0.0021 10 8 5.0698 7.4060 0.0890 11 7 3.1273 8.4691 -0.0979 12 6 1.6591 8.4126 -0.0995 13 6 1.1329 9.3498 0.9981 14 6 1.7078 10.7516 0.7824 15 6 1.1654 11.6838 1.8351 16 1 1.8413 12.1888 2.5092 17 6 -0.1938 11.8918 1.9376 18 7 -1.0169 11.2770 1.1164 19 14 -0.8661 13.0466 3.2427 20 1 -0.3097 14.4075 3.0337 21 1 -2.3469 13.0973 3.1436 22 1 -0.4761 12.5538 4.5882 23 6 3.2339 10.7002 0.8843 24 6 3.7840 9.7787 -0.2088 25 6 1.8614 3.4997 0.0063 26 7 1.3026 2.3039 0.0009 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 5.0859 2.4363 -0.0019 31 1 5.0072 4.9620 -0.0025 32 1 2.1152 5.9807 -0.0012 33 1 1.2821 8.7342 -1.0704 34 1 1.3325 7.3922 0.1018 35 1 1.4392 8.9774 1.9756 36 1 0.0448 9.3913 0.9485 37 1 1.4218 11.1135 -0.2052 38 1 -1.9730 11.4231 1.1888 39 1 3.5203 10.3151 1.8630 40 1 3.6412 11.7029 0.7540 41 1 4.8597 9.6603 -0.0797 42 1 3.5787 10.2085 -1.1893 43 1 1.2508 4.3905 0.0113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492679916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:31 Heat of formation + Delta-G solvation = -22.009698 kcal Electronic energy + Delta-G solvation = -25471.352516 eV Core-core repulsion = 21709.938040 eV Total energy + Delta-G solvation = -3761.414476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32146 -41.06453 -39.49551 -38.40787 -35.61658 -35.30597 -34.95142 -33.11875 -31.81147 -30.88991 -28.58287 -27.97503 -26.22173 -25.50932 -24.51113 -23.95223 -22.54757 -20.97013 -19.99239 -19.76883 -18.96321 -18.47497 -18.06539 -17.49792 -16.76356 -16.52788 -16.41474 -16.07248 -15.72982 -15.49140 -15.07108 -14.95727 -14.78271 -14.69003 -14.56135 -14.24777 -13.91641 -13.47549 -13.13094 -12.92108 -12.88345 -12.76826 -12.61519 -12.48014 -12.32480 -12.13135 -12.12084 -11.92042 -11.46577 -11.38478 -11.03283 -10.98205 -10.65447 -10.36847 -10.33775 -9.63148 -9.29310 -8.06615 -6.19225 -0.76351 -0.03939 0.79447 1.43204 1.44226 1.51074 1.51748 2.13209 2.28168 2.45164 2.72182 2.89461 3.19921 3.34908 3.48591 3.59200 3.76179 3.97337 4.12290 4.27025 4.34519 4.37540 4.38793 4.43368 4.52820 4.60640 4.61348 4.71005 4.77182 4.89382 5.01258 5.02357 5.12113 5.21655 5.28585 5.33703 5.46111 5.55406 5.61517 5.67878 6.01279 6.01570 6.16355 6.41519 6.55708 6.89449 6.89761 7.20050 7.48133 8.96400 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002641 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.454864 B =10601.419195 C =12040.744888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.487 3.513 4 N -0.548 5.548 5 C 0.217 3.783 6 C -0.213 4.213 7 C 0.009 3.991 8 C -0.213 4.213 9 C 0.540 3.460 10 O -0.593 6.593 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.116 4.116 14 C 0.044 3.956 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.276 1.276 23 C -0.114 4.114 24 C 0.116 3.884 25 C 0.202 3.798 26 N -0.574 5.574 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.216 0.784 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.004 0.996 38 H 0.262 0.738 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -19.266 -4.578 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.186 3.814 4 N -0.273 5.273 5 C 0.051 3.949 6 C -0.218 4.218 7 C -0.013 4.013 8 C -0.233 4.233 9 C 0.333 3.667 10 O -0.477 6.477 11 N -0.330 5.330 12 C -0.010 4.010 13 C -0.155 4.155 14 C 0.026 3.974 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.201 1.201 23 C -0.152 4.152 24 C -0.006 4.006 25 C 0.037 3.963 26 N -0.303 5.303 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.232 0.768 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.597 -20.484 -4.580 21.296 hybrid contribution -0.501 1.965 0.805 2.182 sum 3.096 -18.519 -3.775 19.152 Atomic orbital electron populations 1.23292 0.73599 1.05563 1.03105 1.86049 1.25452 1.22757 1.86311 1.21159 0.86633 0.85385 0.88230 1.67630 1.07607 1.31462 1.20597 1.24022 1.02183 0.84024 0.84685 1.20563 0.95510 0.95540 1.10178 1.21938 1.00527 0.88473 0.90316 1.22980 1.01634 0.90844 1.07844 1.18702 0.86462 0.85548 0.76002 1.90742 1.15394 1.88126 1.53441 1.48176 1.07950 1.06305 1.70588 1.22120 0.77507 1.01566 0.99840 1.21877 1.02581 0.95442 0.95574 1.18623 0.90380 0.93160 0.95285 1.21522 0.92152 1.26462 1.17247 0.93647 1.25592 0.97414 0.97275 0.97684 1.69922 1.03150 1.43498 1.38343 0.85808 0.77204 0.79763 0.80014 1.20106 1.20800 1.20147 1.21852 0.97859 0.98258 0.97229 1.21586 0.97572 0.82430 0.99020 1.23820 0.92437 0.94729 0.85329 1.68110 1.41240 0.99360 1.21596 0.85008 0.91738 0.91591 0.76759 0.83587 0.83042 0.91245 0.87643 0.95372 0.90093 0.97738 0.92905 0.94130 0.91939 0.90058 0.90992 0.78501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.35 113.37 1.17 1.67 16 2 O -0.30 -6.35 10.55 -86.17 -0.91 -7.26 16 3 C 0.49 10.92 8.48 180.48 1.53 12.45 16 4 N -0.55 -11.87 10.44 -312.20 -3.26 -15.13 16 5 C 0.22 3.44 11.10 85.17 0.95 4.38 16 6 C -0.21 -3.49 5.90 -19.97 -0.12 -3.60 16 7 C 0.01 0.15 9.49 23.82 0.23 0.38 16 8 C -0.21 -4.62 8.75 23.60 0.21 -4.42 16 9 C 0.54 16.75 7.61 86.33 0.66 17.40 16 10 O -0.59 -21.77 15.66 -4.40 -0.07 -21.84 16 11 N -0.60 -19.66 2.97 -823.22 -2.44 -22.11 16 12 C 0.11 3.52 6.34 86.51 0.55 4.06 16 13 C -0.12 -4.88 5.17 30.82 0.16 -4.72 16 14 C 0.04 2.06 2.06 -11.51 -0.02 2.04 16 15 C -0.54 -28.40 8.56 25.60 0.22 -28.18 16 16 H 0.05 2.42 7.74 -2.91 -0.02 2.39 16 17 C 0.02 1.03 5.30 84.66 0.45 1.48 16 18 N -0.91 -49.01 11.31 21.45 0.24 -48.77 16 19 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 C -0.11 -4.57 5.30 30.67 0.16 -4.41 16 24 C 0.12 4.03 6.44 86.36 0.56 4.59 16 25 C 0.20 3.47 10.68 85.17 0.91 4.38 16 26 N -0.57 -11.78 9.18 -312.19 -2.87 -14.64 16 27 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.15 2.56 7.53 -2.91 -0.02 2.54 16 32 H 0.15 2.55 3.99 -2.91 -0.01 2.54 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.11 2.53 5.36 -2.38 -0.01 2.52 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 3.82 6.03 -2.38 -0.01 3.81 16 37 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.08 2.80 6.99 -2.39 -0.02 2.79 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.20 2.42 6.30 -2.91 -0.02 2.40 16 Total: -1.00 -67.98 355.98 1.36 -66.62 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.03 Total: 11.42 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 7.60 Total: 7.50 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -8.33 Total: -100.65 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.98 Total: -29.11 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -67.98 1.36 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492679916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.611 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds