Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35324 * 117.00096 * 2 1 4 4 N 1.32464 * 118.99069 * 179.97438 * 3 2 1 5 5 C 1.32002 * 120.94543 * 179.97438 * 4 3 2 6 6 C 1.40296 * 118.95426 * 359.97438 * 5 4 3 7 7 C 1.47047 * 120.90957 * 180.02562 * 6 5 4 8 8 C 1.34940 * 120.00092 * 46.13906 * 7 6 5 9 9 C 1.46276 * 119.99932 * 11.43854 * 8 7 6 10 10 O 1.21721 * 119.99911 * 6.76363 * 9 8 7 11 11 N 1.34774 * 120.00261 * 186.77008 * 9 8 7 12 12 C 1.46500 * 120.00340 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46834 * 269.99596 * 12 11 9 14 14 H 1.08003 * 120.00229 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99734 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46811 * 90.00365 * 17 15 13 19 19 H 1.48504 * 109.46745 * 209.99895 * 17 15 13 20 20 H 1.48500 * 109.47339 * 329.99871 * 17 15 13 21 21 C 1.46504 * 119.99883 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.47337 * 270.00789 * 21 11 9 23 23 C 1.52994 * 117.52344 * 116.28083 * 22 21 11 24 24 C 1.52999 * 117.50046 * 184.91374 * 22 21 11 25 25 C 1.40292 * 118.18185 * 0.27734 * 6 5 4 26 26 N 1.32014 * 118.95394 * 359.44270 * 25 6 5 27 27 H 1.09003 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47719 * 300.00420 * 1 2 3 29 29 H 1.09005 * 109.47150 * 60.00695 * 1 2 3 30 30 H 1.07996 * 120.52772 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.00098 * 226.13470 * 7 6 5 32 32 H 1.07999 * 120.00029 * 191.44688 * 8 7 6 33 33 H 1.08999 * 109.47253 * 29.99636 * 12 11 9 34 34 H 1.08995 * 109.47015 * 149.99613 * 12 11 9 35 35 H 0.96991 * 120.00174 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47337 * 150.00615 * 21 11 9 37 37 H 1.08997 * 109.47079 * 30.00409 * 21 11 9 38 38 H 1.09004 * 115.54620 * 330.57966 * 22 21 11 39 39 H 1.08991 * 117.50436 * 214.97229 * 23 22 21 40 40 H 1.09004 * 117.49527 * 359.97438 * 23 22 21 41 41 H 1.09001 * 117.49816 * 359.97277 * 24 22 21 42 42 H 1.09001 * 117.49926 * 144.98972 * 24 22 21 43 43 H 1.07998 * 120.52554 * 179.72334 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 7 3.3672 1.2517 0.0005 5 6 4.0062 2.4067 0.0000 6 6 3.2609 3.5953 -0.0016 7 6 3.9285 4.9055 -0.0028 8 6 4.9567 5.1382 -0.8452 9 6 5.2479 4.1924 -1.9224 10 8 4.4924 3.2624 -2.1366 11 7 6.3529 4.3506 -2.6777 12 6 6.6443 3.4038 -3.7569 13 6 7.4804 2.2712 -3.2193 14 1 7.7665 2.2582 -2.1779 15 6 7.8802 1.2515 -4.0568 16 7 8.6103 0.2633 -3.5878 17 14 7.3847 1.2736 -5.8578 18 1 8.4178 1.9918 -6.6465 19 1 7.2629 -0.1205 -6.3547 20 1 6.0797 1.9669 -6.0037 21 6 7.2620 5.4702 -2.4202 22 6 6.8307 6.6794 -3.2526 23 6 6.3710 7.9289 -2.4989 24 6 7.7248 7.9203 -3.2117 25 6 1.8613 3.4997 0.0033 26 7 1.3024 2.3038 -0.0019 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 5.0858 2.4364 0.0000 31 1 3.5959 5.6817 0.6706 32 1 5.5646 6.0225 -0.7240 33 1 5.7100 3.0083 -4.1555 34 1 7.1906 3.9140 -4.5502 35 1 8.8913 -0.4542 -4.1768 36 1 8.2774 5.1841 -2.6941 37 1 7.2302 5.7280 -1.3616 38 1 6.3332 6.4483 -4.1945 39 1 5.5711 8.5199 -2.9448 40 1 6.3753 7.8896 -1.4095 41 1 8.6200 7.8755 -2.5915 42 1 7.8154 8.5056 -4.1268 43 1 1.2506 4.3905 0.0068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492683508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = 46.227237 kcal Electronic energy + Delta-G solvation = -26552.273336 eV Core-core repulsion = 22793.817835 eV Total energy + Delta-G solvation = -3758.455500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94057 -39.47528 -38.14917 -37.29752 -34.83827 -33.79560 -33.50666 -32.47878 -30.01549 -28.47953 -27.43793 -26.38239 -24.32788 -24.24482 -22.74389 -22.39139 -21.02175 -20.49219 -18.64227 -18.17677 -17.74930 -17.10996 -16.89540 -16.18301 -15.61831 -15.25521 -15.02215 -14.63270 -14.40477 -14.15668 -13.99850 -13.71157 -13.57765 -13.21149 -13.10975 -12.81522 -12.49764 -12.11887 -11.94398 -11.64127 -11.56705 -11.53337 -11.29768 -10.96649 -10.92106 -10.58148 -10.55427 -10.41943 -10.07843 -9.95486 -9.87078 -9.53657 -9.23485 -8.76624 -8.57975 -8.03605 -7.76721 -6.07586 -4.06461 0.76647 1.43295 1.89961 2.79712 3.27219 3.35980 3.39920 3.66453 3.80568 3.91479 4.07968 4.23667 4.40699 4.71781 4.75186 4.86867 4.91144 4.93473 5.01239 5.12895 5.22953 5.25102 5.26814 5.32340 5.38808 5.49366 5.57329 5.61721 5.74513 5.87705 5.96275 5.97435 6.07513 6.15097 6.24679 6.35101 6.44257 6.69010 6.96862 6.99187 7.28836 7.36667 7.60956 8.19070 8.37572 8.46125 8.88517 8.96126 9.52597 11.05660 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009486 B = 0.005037 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.109533 B = 5557.406641 C = 7909.252822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.291 6.291 3 C 0.497 3.503 4 N -0.520 5.520 5 C 0.269 3.731 6 C -0.203 4.203 7 C -0.032 4.032 8 C -0.192 4.192 9 C 0.533 3.467 10 O -0.537 6.537 11 N -0.580 5.580 12 C 0.216 3.784 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.872 3.128 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.140 3.860 22 C -0.167 4.167 23 C -0.182 4.182 24 C -0.176 4.176 25 C 0.189 3.811 26 N -0.580 5.580 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.169 0.831 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.040 0.960 34 H 0.025 0.975 35 H 0.265 0.735 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 14.394 7.637 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.193 6.193 3 C 0.196 3.804 4 N -0.245 5.245 5 C 0.101 3.899 6 C -0.208 4.208 7 C -0.053 4.053 8 C -0.213 4.213 9 C 0.322 3.678 10 O -0.417 6.417 11 N -0.309 5.309 12 C 0.096 3.904 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.699 3.301 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.190 1.190 21 C 0.016 3.984 22 C -0.187 4.187 23 C -0.219 4.219 24 C -0.214 4.214 25 C 0.025 3.975 26 N -0.309 5.309 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.186 0.814 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.033 12.448 7.418 18.213 hybrid contribution 0.199 0.979 -1.244 1.596 sum -10.834 13.427 6.174 18.324 Atomic orbital electron populations 1.22915 0.76302 1.03114 1.02552 1.86055 1.22888 1.23248 1.87063 1.20764 0.86400 0.84442 0.88773 1.67558 1.06956 1.30462 1.19496 1.23171 1.00074 0.84675 0.81938 1.20408 0.95526 0.95680 1.09184 1.21901 0.93387 0.93550 0.96510 1.23364 0.99531 1.01588 0.96838 1.18272 0.81500 0.85033 0.83012 1.90823 1.48035 1.32574 1.70221 1.47852 1.21848 1.26860 1.34297 1.19676 0.97243 0.88196 0.85311 1.21261 1.31917 1.05127 0.98336 0.90672 1.24823 0.94481 0.95026 0.98430 1.69881 1.36437 1.11031 1.35893 0.86908 0.79577 0.77871 0.85755 1.20116 1.20936 1.19001 1.21102 0.94823 0.84485 0.97990 1.22932 1.04057 0.89805 1.01893 1.23032 0.98005 1.01733 0.99147 1.22915 0.94480 1.01252 1.02740 1.22888 0.91262 0.94068 0.89265 1.67874 1.41129 0.99193 1.22742 0.88243 0.92193 0.92083 0.81386 0.84597 0.84835 0.94187 0.95725 0.92545 0.89138 0.90863 0.87604 0.89152 0.88836 0.88591 0.89009 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.35 101.05 1.05 1.59 16 2 O -0.29 -5.00 10.55 -17.66 -0.19 -5.19 16 3 C 0.50 9.28 8.48 -91.00 -0.77 8.51 16 4 N -0.52 -10.74 10.44 -14.33 -0.15 -10.89 16 5 C 0.27 5.00 8.02 -16.71 -0.13 4.86 16 6 C -0.20 -3.05 4.43 -104.78 -0.46 -3.52 16 7 C -0.03 -0.38 9.84 -37.18 -0.37 -0.74 16 8 C -0.19 -2.56 9.07 -37.52 -0.34 -2.90 16 9 C 0.53 10.11 6.78 -13.03 -0.09 10.03 16 10 O -0.54 -12.38 11.95 5.17 0.06 -12.32 16 11 N -0.58 -11.25 2.46 -176.76 -0.43 -11.68 16 12 C 0.22 5.17 4.23 -5.20 -0.02 5.14 16 13 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 14 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -27.65 13.96 55.43 0.77 -26.88 16 17 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 21 C 0.14 2.06 5.36 -4.04 -0.02 2.04 16 22 C -0.17 -2.07 6.01 -90.62 -0.54 -2.61 16 23 C -0.18 -1.73 9.70 -26.73 -0.26 -1.99 16 24 C -0.18 -1.74 10.25 -26.73 -0.27 -2.01 16 25 C 0.19 2.63 11.10 -16.70 -0.19 2.45 16 26 N -0.58 -9.36 9.18 -14.33 -0.13 -9.50 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.17 3.21 7.37 -52.49 -0.39 2.82 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.37 5.02 -52.49 -0.26 1.11 16 33 H 0.04 1.06 6.47 -51.93 -0.34 0.72 16 34 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.07 0.89 5.92 -51.93 -0.31 0.58 16 38 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.76 7.25 -51.93 -0.38 0.38 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -36.20 362.77 -8.00 -44.21 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.87 Total: 1.97 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.87 Total: 7.70 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.06 Total: -58.94 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.12 Total: -17.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.20 -8.00 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492683508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.433 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds