Wall clock time and date at job start Tue Mar 31 2020 11:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35324 * 117.00096 * 2 1 4 4 N 1.32464 * 118.99069 * 179.97438 * 3 2 1 5 5 C 1.32002 * 120.94543 * 179.97438 * 4 3 2 6 6 C 1.40296 * 118.95426 * 359.97438 * 5 4 3 7 7 C 1.47047 * 120.90957 * 180.02562 * 6 5 4 8 8 C 1.34940 * 120.00092 * 46.13906 * 7 6 5 9 9 C 1.46276 * 119.99932 * 11.43854 * 8 7 6 10 10 O 1.21721 * 119.99911 * 6.76363 * 9 8 7 11 11 N 1.34774 * 120.00261 * 186.77008 * 9 8 7 12 12 C 1.46500 * 120.00340 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46834 * 269.99596 * 12 11 9 14 14 H 1.08003 * 120.00229 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99734 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46811 * 90.00365 * 17 15 13 19 19 H 1.48504 * 109.46745 * 209.99895 * 17 15 13 20 20 H 1.48500 * 109.47339 * 329.99871 * 17 15 13 21 21 C 1.46504 * 119.99883 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.47337 * 270.00789 * 21 11 9 23 23 C 1.52994 * 117.52344 * 116.28083 * 22 21 11 24 24 C 1.52999 * 117.50046 * 184.91374 * 22 21 11 25 25 C 1.40292 * 118.18185 * 0.27734 * 6 5 4 26 26 N 1.32014 * 118.95394 * 359.44270 * 25 6 5 27 27 H 1.09003 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47719 * 300.00420 * 1 2 3 29 29 H 1.09005 * 109.47150 * 60.00695 * 1 2 3 30 30 H 1.07996 * 120.52772 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.00098 * 226.13470 * 7 6 5 32 32 H 1.07999 * 120.00029 * 191.44688 * 8 7 6 33 33 H 1.08999 * 109.47253 * 29.99636 * 12 11 9 34 34 H 1.08995 * 109.47015 * 149.99613 * 12 11 9 35 35 H 0.96991 * 120.00174 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47337 * 150.00615 * 21 11 9 37 37 H 1.08997 * 109.47079 * 30.00409 * 21 11 9 38 38 H 1.09004 * 115.54620 * 330.57966 * 22 21 11 39 39 H 1.08991 * 117.50436 * 214.97229 * 23 22 21 40 40 H 1.09004 * 117.49527 * 359.97438 * 23 22 21 41 41 H 1.09001 * 117.49816 * 359.97277 * 24 22 21 42 42 H 1.09001 * 117.49926 * 144.98972 * 24 22 21 43 43 H 1.07998 * 120.52554 * 179.72334 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 7 3.3672 1.2517 0.0005 5 6 4.0062 2.4067 0.0000 6 6 3.2609 3.5953 -0.0016 7 6 3.9285 4.9055 -0.0028 8 6 4.9567 5.1382 -0.8452 9 6 5.2479 4.1924 -1.9224 10 8 4.4924 3.2624 -2.1366 11 7 6.3529 4.3506 -2.6777 12 6 6.6443 3.4038 -3.7569 13 6 7.4804 2.2712 -3.2193 14 1 7.7665 2.2582 -2.1779 15 6 7.8802 1.2515 -4.0568 16 7 8.6103 0.2633 -3.5878 17 14 7.3847 1.2736 -5.8578 18 1 8.4178 1.9918 -6.6465 19 1 7.2629 -0.1205 -6.3547 20 1 6.0797 1.9669 -6.0037 21 6 7.2620 5.4702 -2.4202 22 6 6.8307 6.6794 -3.2526 23 6 6.3710 7.9289 -2.4989 24 6 7.7248 7.9203 -3.2117 25 6 1.8613 3.4997 0.0033 26 7 1.3024 2.3038 -0.0019 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 5.0858 2.4364 0.0000 31 1 3.5959 5.6817 0.6706 32 1 5.5646 6.0225 -0.7240 33 1 5.7100 3.0083 -4.1555 34 1 7.1906 3.9140 -4.5502 35 1 8.8913 -0.4542 -4.1768 36 1 8.2774 5.1841 -2.6941 37 1 7.2302 5.7280 -1.3616 38 1 6.3332 6.4483 -4.1945 39 1 5.5711 8.5199 -2.9448 40 1 6.3753 7.8896 -1.4095 41 1 8.6200 7.8755 -2.5915 42 1 7.8154 8.5056 -4.1268 43 1 1.2506 4.3905 0.0068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492683508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:24 Heat of formation + Delta-G solvation = 18.368128 kcal Electronic energy + Delta-G solvation = -26553.481397 eV Core-core repulsion = 22793.817835 eV Total energy + Delta-G solvation = -3759.663562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20709 -40.86187 -39.35421 -38.34151 -36.30364 -35.04201 -34.79947 -34.58831 -31.40244 -30.15266 -28.48633 -27.67292 -25.76355 -25.53317 -24.35347 -23.11481 -22.34746 -21.61261 -19.86263 -19.50922 -19.12626 -18.94675 -18.37212 -17.40078 -17.19770 -16.40865 -16.37058 -15.98328 -15.67517 -15.52673 -15.13828 -15.04936 -14.74249 -14.60990 -14.37434 -14.30174 -14.03493 -13.72939 -13.36664 -12.98437 -12.89817 -12.61146 -12.44158 -12.37026 -12.21314 -12.13182 -12.08282 -11.86068 -11.78656 -11.20617 -11.00807 -10.93281 -10.84070 -10.57746 -10.08201 -9.39353 -9.21747 -8.35870 -6.39499 -0.42859 0.18472 0.74338 1.25299 1.30709 1.40081 1.63353 2.27091 2.33542 2.46964 2.80058 2.98557 3.03256 3.08677 3.62812 3.66703 3.75804 3.91201 3.96279 4.09603 4.10826 4.24471 4.34664 4.36706 4.38026 4.60784 4.67323 4.70911 4.75341 4.80440 4.85558 4.92005 4.96566 5.11730 5.14258 5.17534 5.37350 5.39807 5.43908 5.47110 5.66364 5.74857 6.15859 6.22851 6.61802 6.75714 7.08451 7.21365 7.46460 8.81018 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009486 B = 0.005037 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.109533 B = 5557.406641 C = 7909.252822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.317 6.317 3 C 0.479 3.521 4 N -0.572 5.572 5 C 0.243 3.757 6 C -0.202 4.202 7 C 0.000 4.000 8 C -0.202 4.202 9 C 0.520 3.480 10 O -0.590 6.590 11 N -0.590 5.590 12 C 0.230 3.770 13 C -0.528 4.528 14 H 0.033 0.967 15 C 0.013 3.987 16 N -0.943 5.943 17 Si 0.941 3.059 18 H -0.249 1.249 19 H -0.284 1.284 20 H -0.262 1.262 21 C 0.140 3.860 22 C -0.192 4.192 23 C -0.159 4.159 24 C -0.168 4.168 25 C 0.195 3.805 26 N -0.573 5.573 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.144 0.856 31 H 0.202 0.798 32 H 0.173 0.827 33 H 0.012 0.988 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 18.636 8.078 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.219 6.219 3 C 0.177 3.823 4 N -0.298 5.298 5 C 0.077 3.923 6 C -0.207 4.207 7 C -0.021 4.021 8 C -0.223 4.223 9 C 0.312 3.688 10 O -0.473 6.473 11 N -0.318 5.318 12 C 0.107 3.893 13 C -0.567 4.567 14 H 0.051 0.949 15 C -0.185 4.185 16 N -0.583 5.583 17 Si 0.764 3.236 18 H -0.173 1.173 19 H -0.210 1.210 20 H -0.187 1.187 21 C 0.017 3.983 22 C -0.211 4.211 23 C -0.195 4.195 24 C -0.205 4.205 25 C 0.032 3.968 26 N -0.303 5.303 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.218 0.782 32 H 0.191 0.809 33 H 0.031 0.969 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.819 16.749 7.876 22.514 hybrid contribution 0.716 -0.368 -1.274 1.507 sum -12.103 16.381 6.602 21.410 Atomic orbital electron populations 1.23242 0.73690 1.05273 1.03026 1.86017 1.25561 1.23296 1.87059 1.20916 0.86102 0.85570 0.89665 1.67357 1.08787 1.32291 1.21404 1.22994 0.99454 0.86069 0.83769 1.20751 0.96213 0.96021 1.07684 1.22478 0.91062 0.92639 0.95875 1.23315 1.01301 1.01646 0.96009 1.19321 0.80476 0.85241 0.83718 1.90806 1.49759 1.35026 1.71729 1.47902 1.23174 1.27311 1.33449 1.19188 0.94893 0.88093 0.87106 1.21511 1.31908 1.06803 0.96477 0.94903 1.25772 0.94481 0.94579 1.03656 1.70038 1.38281 1.12129 1.37858 0.85815 0.79880 0.78041 0.79845 1.17271 1.20953 1.18660 1.21292 0.92854 0.83840 1.00267 1.22635 1.06936 0.90007 1.01541 1.23182 0.97698 0.98356 1.00283 1.23023 0.95246 0.98857 1.03397 1.23823 0.91313 0.94872 0.86835 1.67998 1.40553 0.99387 1.22405 0.85341 0.90952 0.92208 0.83875 0.78165 0.80949 0.96949 0.94184 0.92391 0.91190 0.87898 0.89828 0.88135 0.86517 0.87638 0.88363 0.76225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.35 113.37 1.17 2.14 16 2 O -0.32 -11.27 10.55 -86.12 -0.91 -12.18 16 3 C 0.48 18.41 8.48 180.48 1.53 19.94 16 4 N -0.57 -25.17 10.44 -312.20 -3.26 -28.43 16 5 C 0.24 9.48 8.02 85.17 0.68 10.16 16 6 C -0.20 -5.74 4.43 -19.97 -0.09 -5.82 16 7 C 0.00 0.00 9.84 23.82 0.23 0.23 16 8 C -0.20 -4.75 9.07 23.60 0.21 -4.54 16 9 C 0.52 19.88 6.78 86.33 0.59 20.46 16 10 O -0.59 -28.32 11.95 -4.41 -0.05 -28.38 16 11 N -0.59 -23.36 2.46 -831.35 -2.04 -25.40 16 12 C 0.23 11.42 4.23 85.63 0.36 11.78 16 13 C -0.53 -31.57 9.94 25.60 0.25 -31.31 16 14 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 15 C 0.01 0.81 5.47 84.66 0.46 1.27 16 16 N -0.94 -61.19 13.96 21.45 0.30 -60.89 16 17 Si 0.94 46.35 27.47 68.60 1.88 48.23 16 18 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 20 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 21 C 0.14 3.99 5.36 86.38 0.46 4.45 16 22 C -0.19 -4.35 6.01 -10.79 -0.06 -4.41 16 23 C -0.16 -2.30 9.70 30.59 0.30 -2.00 16 24 C -0.17 -2.77 10.25 30.59 0.31 -2.45 16 25 C 0.20 4.87 11.10 85.17 0.95 5.82 16 26 N -0.57 -17.90 9.18 -312.19 -2.87 -20.77 16 27 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 29 H 0.06 1.36 8.09 -2.38 -0.02 1.34 16 30 H 0.14 6.03 7.37 -2.91 -0.02 6.00 16 31 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.17 2.63 5.02 -2.91 -0.01 2.62 16 33 H 0.01 0.69 6.47 -2.39 -0.02 0.67 16 34 H 0.04 1.85 7.50 -2.39 -0.02 1.83 16 35 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 36 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.10 2.24 5.92 -2.39 -0.01 2.23 16 38 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 1.18 7.25 -2.39 -0.02 1.16 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -89.23 362.77 1.39 -87.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.97 Total: 14.27 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 7.37 Total: 25.70 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -7.87 Total: -135.49 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.96 Total: -40.56 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -89.23 1.39 -87.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492683508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.210 kcal (2) G-P(sol) polarization free energy of solvation -89.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds