Wall clock time and date at job start Tue Mar 31 2020 11:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35332 * 117.00040 * 2 1 4 4 N 1.32457 * 118.99005 * 180.02562 * 3 2 1 5 5 C 1.32005 * 120.94400 * 180.02562 * 4 3 2 6 6 C 1.40298 * 118.95589 * 359.97438 * 5 4 3 7 7 C 1.47044 * 120.91028 * 179.97438 * 6 5 4 8 8 C 1.34935 * 120.00106 * 46.12550 * 7 6 5 9 9 C 1.46277 * 119.99918 * 11.44675 * 8 7 6 10 10 O 1.21718 * 120.00135 * 6.72657 * 9 8 7 11 11 N 1.34782 * 120.00258 * 186.72977 * 9 8 7 12 12 C 1.46494 * 120.00366 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.01672 * 325.06215 * 12 11 9 14 14 C 1.54265 * 110.03015 * 86.45077 * 12 11 9 15 15 C 1.54891 * 104.31004 * 95.66113 * 14 12 11 16 16 C 1.55235 * 102.59105 * 37.92906 * 15 14 12 17 17 H 1.09005 * 110.47284 * 80.77403 * 16 15 14 18 18 C 1.50697 * 110.47162 * 203.39621 * 16 15 14 19 19 H 1.07998 * 119.99885 * 114.80844 * 18 16 15 20 20 C 1.37871 * 120.00106 * 294.80818 * 18 16 15 21 21 N 1.31521 * 119.99769 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 120.00304 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47009 * 89.99988 * 22 20 18 24 24 H 1.48499 * 109.46976 * 210.00080 * 22 20 18 25 25 H 1.48494 * 109.46837 * 329.99759 * 22 20 18 26 26 C 1.53868 * 110.07506 * 203.64531 * 12 11 9 27 27 C 1.40293 * 118.17843 * 0.25647 * 6 5 4 28 28 N 1.32009 * 118.95684 * 359.48752 * 27 6 5 29 29 H 1.09001 * 109.47024 * 299.99696 * 1 2 3 30 30 H 1.09000 * 109.47226 * 59.99760 * 1 2 3 31 31 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.52262 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.99532 * 226.12327 * 7 6 5 34 34 H 1.07997 * 120.00095 * 191.44118 * 8 7 6 35 35 H 0.97001 * 119.99148 * 359.97438 * 11 9 8 36 36 H 1.09010 * 110.48711 * 214.39838 * 14 12 11 37 37 H 1.08992 * 110.48918 * 336.91684 * 14 12 11 38 38 H 1.09001 * 110.75678 * 156.31707 * 15 14 12 39 39 H 1.09002 * 110.75644 * 279.69144 * 15 14 12 40 40 H 0.96999 * 119.99632 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.03384 * 359.97438 * 26 12 11 42 42 H 1.09004 * 110.03638 * 121.40361 * 26 12 11 43 43 H 1.07999 * 120.52361 * 179.74786 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2518 -0.0005 5 6 4.0062 2.4068 0.0000 6 6 3.2609 3.5955 0.0005 7 6 3.9284 4.9056 0.0016 8 6 4.9567 5.1397 -0.8402 9 6 5.2480 4.1958 -1.9191 10 8 4.4928 3.2659 -2.1346 11 7 6.3527 4.3558 -2.6746 12 6 6.6447 3.4102 -3.7547 13 1 6.3254 2.4077 -3.4695 14 6 5.9250 3.8462 -5.0476 15 6 6.9942 4.6499 -5.8286 16 6 8.2946 3.8530 -5.5394 17 1 8.3613 2.9824 -6.1920 18 6 9.5034 4.7363 -5.7113 19 1 10.1240 4.9739 -4.8600 20 6 9.8170 5.2412 -6.9554 21 7 9.0614 4.9515 -7.9922 22 14 11.3149 6.3368 -7.1684 23 1 12.4998 5.4993 -7.4839 24 1 11.0748 7.2932 -8.2788 25 1 11.5607 7.0890 -5.9118 26 6 8.1513 3.4145 -4.0674 27 6 1.8612 3.4998 0.0060 28 7 1.3024 2.3038 0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 5.0858 2.4364 0.0000 33 1 3.5957 5.6806 0.6763 34 1 5.5645 6.0239 -0.7175 35 1 6.9543 5.0971 -2.5029 36 1 5.6089 2.9745 -5.6208 37 1 5.0687 4.4783 -4.8129 38 1 6.7706 4.6552 -6.8954 39 1 7.0706 5.6669 -5.4437 40 1 9.2822 5.3064 -8.8675 41 1 8.6659 4.1206 -3.4157 42 1 8.5632 2.4141 -3.9339 43 1 1.2505 4.3905 0.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493706407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:31 Heat of formation + Delta-G solvation = -3.007224 kcal Electronic energy + Delta-G solvation = -25856.578730 eV Core-core repulsion = 22095.988264 eV Total energy + Delta-G solvation = -3760.590467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27763 -39.77334 -38.42892 -37.17511 -34.28119 -33.91099 -33.55836 -32.01790 -30.10773 -28.21195 -27.80955 -27.11680 -24.65263 -24.55026 -23.76181 -22.28821 -19.97813 -19.42299 -18.98660 -18.91859 -18.03969 -17.27064 -16.60375 -16.47415 -15.72555 -15.26572 -14.89899 -14.76551 -14.55011 -14.52498 -14.03060 -13.95377 -13.62882 -13.45879 -13.15568 -12.76328 -12.37993 -12.19432 -11.73318 -11.59417 -11.29757 -11.10353 -11.03731 -10.89807 -10.84785 -10.59359 -10.43662 -10.22059 -9.99227 -9.74757 -9.59786 -9.25016 -9.15291 -8.85318 -8.60361 -8.39222 -8.38151 -6.03975 -4.07349 0.42378 1.08614 1.55276 2.48807 3.27469 3.33948 3.34856 3.36329 3.52509 3.73587 3.93831 4.40552 4.42774 4.51702 4.66043 4.76342 4.99529 5.04294 5.05409 5.21582 5.27658 5.34561 5.52635 5.62763 5.63532 5.78495 5.86638 5.94761 6.12187 6.28425 6.31449 6.57662 6.61009 6.64271 6.72379 6.88256 6.91436 7.05258 7.22020 7.30723 7.66515 7.79669 7.82939 7.99372 8.01984 8.39720 8.43274 8.95350 9.56861 11.05475 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.002512 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.040608 B =11143.665409 C =11606.152334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.292 6.292 3 C 0.500 3.500 4 N -0.526 5.526 5 C 0.262 3.738 6 C -0.205 4.205 7 C -0.023 4.023 8 C -0.198 4.198 9 C 0.532 3.468 10 O -0.547 6.547 11 N -0.703 5.703 12 C 0.139 3.861 13 H 0.076 0.924 14 C -0.134 4.134 15 C -0.099 4.099 16 C 0.048 3.952 17 H 0.033 0.967 18 C -0.515 4.515 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 C 0.195 3.805 28 N -0.575 5.575 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.401 0.599 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.050 -0.443 18.261 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.193 6.193 3 C 0.199 3.801 4 N -0.251 5.251 5 C 0.094 3.906 6 C -0.210 4.210 7 C -0.044 4.044 8 C -0.219 4.219 9 C 0.320 3.680 10 O -0.427 6.427 11 N -0.352 5.352 12 C 0.036 3.964 13 H 0.094 0.906 14 C -0.173 4.173 15 C -0.138 4.138 16 C 0.030 3.970 17 H 0.051 0.949 18 C -0.553 4.553 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.160 4.160 27 C 0.031 3.969 28 N -0.305 5.305 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.014 -2.338 17.864 23.452 hybrid contribution 1.345 2.092 -0.386 2.517 sum -13.669 -0.246 17.479 22.190 Atomic orbital electron populations 1.22960 0.75909 1.03356 1.02757 1.86047 1.23207 1.23120 1.86908 1.20752 0.86277 0.84588 0.88513 1.67498 1.07253 1.30323 1.20046 1.23044 0.99780 0.84879 0.82887 1.20412 0.95638 0.95656 1.09253 1.21957 0.92702 0.93530 0.96198 1.23194 1.00188 1.01669 0.96815 1.18459 0.81522 0.85226 0.82832 1.90837 1.47742 1.32849 1.71299 1.46311 1.24375 1.30892 1.33576 1.21793 0.96881 0.91768 0.86006 0.90563 1.22823 0.98331 1.00191 0.95963 1.22518 0.94496 0.97477 0.99262 1.19521 0.93349 0.95338 0.88833 0.94929 1.21156 1.10146 1.29976 0.93997 0.92704 1.24992 0.96443 0.96412 0.96114 1.69963 1.38109 1.44873 0.99683 0.86648 0.83359 0.80568 0.77717 1.20735 1.21319 1.19983 1.22606 0.91621 1.00484 1.01323 1.22979 0.91286 0.94199 0.88438 1.67922 1.41073 0.99185 1.22308 0.92035 0.91909 0.88034 0.81723 0.84200 0.84455 0.76435 0.92153 0.93289 0.91531 0.93501 0.93049 0.91980 0.92753 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 10.35 101.05 1.05 1.45 16 2 O -0.29 -3.97 10.55 -17.69 -0.19 -4.16 16 3 C 0.50 7.41 8.48 -91.00 -0.77 6.63 16 4 N -0.53 -8.26 10.44 -14.32 -0.15 -8.41 16 5 C 0.26 3.52 8.02 -16.70 -0.13 3.39 16 6 C -0.20 -2.30 4.43 -104.78 -0.46 -2.76 16 7 C -0.02 -0.19 9.84 -37.19 -0.37 -0.55 16 8 C -0.20 -1.86 9.94 -37.53 -0.37 -2.23 16 9 C 0.53 7.36 6.91 -13.03 -0.09 7.27 16 10 O -0.55 -9.41 12.04 5.17 0.06 -9.35 16 11 N -0.70 -10.10 5.04 -54.16 -0.27 -10.37 16 12 C 0.14 2.44 3.22 -66.82 -0.22 2.23 16 13 H 0.08 1.40 7.61 -51.93 -0.39 1.00 16 14 C -0.13 -2.59 6.52 -25.07 -0.16 -2.76 16 15 C -0.10 -2.23 5.77 -24.55 -0.14 -2.37 16 16 C 0.05 1.14 2.73 -89.93 -0.25 0.90 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.51 -13.47 8.47 -34.44 -0.29 -13.76 16 19 H 0.05 1.40 7.54 -52.49 -0.40 1.01 16 20 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 21 N -0.89 -25.06 12.30 55.43 0.68 -24.37 16 22 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.12 -2.34 6.13 -25.62 -0.16 -2.50 16 27 C 0.19 2.11 11.10 -16.70 -0.19 1.93 16 28 N -0.58 -7.47 9.18 -14.33 -0.13 -7.61 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.17 2.04 7.37 -52.49 -0.39 1.65 16 33 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.40 4.99 8.28 -40.82 -0.34 4.65 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.07 1.66 7.57 -51.93 -0.39 1.26 16 39 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -32.92 360.48 -8.28 -41.20 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.05 Total: 3.52 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.65 Total: -1.56 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.13 Total: -50.76 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.12 Total: -13.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.92 -8.28 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493706407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.191 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds