Wall clock time and date at job start Tue Mar 31 2020 11:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35332 * 117.00040 * 2 1 4 4 N 1.32457 * 118.99005 * 180.02562 * 3 2 1 5 5 C 1.32005 * 120.94400 * 180.02562 * 4 3 2 6 6 C 1.40298 * 118.95589 * 359.97438 * 5 4 3 7 7 C 1.47044 * 120.91028 * 179.97438 * 6 5 4 8 8 C 1.34935 * 120.00106 * 46.12550 * 7 6 5 9 9 C 1.46277 * 119.99918 * 11.44675 * 8 7 6 10 10 O 1.21718 * 120.00135 * 6.72657 * 9 8 7 11 11 N 1.34782 * 120.00258 * 186.72977 * 9 8 7 12 12 C 1.46494 * 120.00366 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.01672 * 325.06215 * 12 11 9 14 14 C 1.54265 * 110.03015 * 86.45077 * 12 11 9 15 15 C 1.54891 * 104.31004 * 95.66113 * 14 12 11 16 16 C 1.55235 * 102.59105 * 37.92906 * 15 14 12 17 17 H 1.09005 * 110.47284 * 80.77403 * 16 15 14 18 18 C 1.50697 * 110.47162 * 203.39621 * 16 15 14 19 19 H 1.07998 * 119.99885 * 114.80844 * 18 16 15 20 20 C 1.37871 * 120.00106 * 294.80818 * 18 16 15 21 21 N 1.31521 * 119.99769 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 120.00304 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47009 * 89.99988 * 22 20 18 24 24 H 1.48499 * 109.46976 * 210.00080 * 22 20 18 25 25 H 1.48494 * 109.46837 * 329.99759 * 22 20 18 26 26 C 1.53868 * 110.07506 * 203.64531 * 12 11 9 27 27 C 1.40293 * 118.17843 * 0.25647 * 6 5 4 28 28 N 1.32009 * 118.95684 * 359.48752 * 27 6 5 29 29 H 1.09001 * 109.47024 * 299.99696 * 1 2 3 30 30 H 1.09000 * 109.47226 * 59.99760 * 1 2 3 31 31 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.52262 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.99532 * 226.12327 * 7 6 5 34 34 H 1.07997 * 120.00095 * 191.44118 * 8 7 6 35 35 H 0.97001 * 119.99148 * 359.97438 * 11 9 8 36 36 H 1.09010 * 110.48711 * 214.39838 * 14 12 11 37 37 H 1.08992 * 110.48918 * 336.91684 * 14 12 11 38 38 H 1.09001 * 110.75678 * 156.31707 * 15 14 12 39 39 H 1.09002 * 110.75644 * 279.69144 * 15 14 12 40 40 H 0.96999 * 119.99632 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.03384 * 359.97438 * 26 12 11 42 42 H 1.09004 * 110.03638 * 121.40361 * 26 12 11 43 43 H 1.07999 * 120.52361 * 179.74786 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2518 -0.0005 5 6 4.0062 2.4068 0.0000 6 6 3.2609 3.5955 0.0005 7 6 3.9284 4.9056 0.0016 8 6 4.9567 5.1397 -0.8402 9 6 5.2480 4.1958 -1.9191 10 8 4.4928 3.2659 -2.1346 11 7 6.3527 4.3558 -2.6746 12 6 6.6447 3.4102 -3.7547 13 1 6.3254 2.4077 -3.4695 14 6 5.9250 3.8462 -5.0476 15 6 6.9942 4.6499 -5.8286 16 6 8.2946 3.8530 -5.5394 17 1 8.3613 2.9824 -6.1920 18 6 9.5034 4.7363 -5.7113 19 1 10.1240 4.9739 -4.8600 20 6 9.8170 5.2412 -6.9554 21 7 9.0614 4.9515 -7.9922 22 14 11.3149 6.3368 -7.1684 23 1 12.4998 5.4993 -7.4839 24 1 11.0748 7.2932 -8.2788 25 1 11.5607 7.0890 -5.9118 26 6 8.1513 3.4145 -4.0674 27 6 1.8612 3.4998 0.0060 28 7 1.3024 2.3038 0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 5.0858 2.4364 0.0000 33 1 3.5957 5.6806 0.6763 34 1 5.5645 6.0239 -0.7175 35 1 6.9543 5.0971 -2.5029 36 1 5.6089 2.9745 -5.6208 37 1 5.0687 4.4783 -4.8129 38 1 6.7706 4.6552 -6.8954 39 1 7.0706 5.6669 -5.4437 40 1 9.2822 5.3064 -8.8675 41 1 8.6659 4.1206 -3.4157 42 1 8.5632 2.4141 -3.9339 43 1 1.2505 4.3905 0.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493706407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:30 Heat of formation + Delta-G solvation = -27.569477 kcal Electronic energy + Delta-G solvation = -25857.643830 eV Core-core repulsion = 22095.988264 eV Total energy + Delta-G solvation = -3761.655566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20685 -40.92239 -39.41480 -38.63953 -35.36070 -34.99546 -34.78451 -33.74966 -31.03582 -29.97111 -28.91819 -28.35003 -26.01354 -25.53362 -25.14305 -23.33668 -21.39107 -20.90446 -20.33042 -19.83910 -18.96356 -18.52087 -18.23322 -17.39822 -17.03714 -16.60846 -16.27341 -16.06046 -15.70778 -15.49985 -15.27188 -14.99573 -14.66308 -14.48093 -14.25661 -14.10883 -13.89537 -13.56053 -12.94099 -12.90147 -12.77248 -12.52689 -12.42355 -12.35755 -12.22314 -12.09397 -11.88101 -11.66912 -11.45232 -11.09194 -11.01903 -10.86121 -10.80463 -10.44464 -10.12829 -9.85925 -9.25657 -8.09366 -6.19229 -0.43293 0.18297 0.71877 1.43828 1.45054 1.54395 1.63408 2.34392 2.42819 2.48294 2.80137 3.09225 3.21977 3.62706 3.67815 3.82684 3.91294 4.01547 4.03511 4.20063 4.21114 4.37121 4.38536 4.62984 4.68410 4.69736 4.76717 4.80359 4.93096 4.99757 5.09409 5.12642 5.18683 5.20367 5.26403 5.41942 5.45030 5.66756 5.72188 5.73814 5.90176 5.99578 6.16420 6.38479 6.73071 6.92546 7.06987 7.37706 7.48690 8.99679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.002512 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.040608 B =11143.665409 C =11606.152334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.478 3.522 4 N -0.564 5.564 5 C 0.242 3.758 6 C -0.205 4.205 7 C 0.001 3.999 8 C -0.204 4.204 9 C 0.527 3.473 10 O -0.585 6.585 11 N -0.700 5.700 12 C 0.155 3.845 13 H 0.069 0.931 14 C -0.123 4.123 15 C -0.087 4.087 16 C 0.039 3.961 17 H -0.005 1.005 18 C -0.525 4.525 19 H 0.062 0.938 20 C 0.008 3.992 21 N -0.923 5.923 22 Si 0.954 3.046 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.261 1.261 26 C -0.110 4.110 27 C 0.191 3.809 28 N -0.579 5.579 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.175 0.825 35 H 0.413 0.587 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.258 0.742 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 1.936 20.645 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.177 3.823 4 N -0.290 5.290 5 C 0.076 3.924 6 C -0.209 4.209 7 C -0.020 4.020 8 C -0.225 4.225 9 C 0.318 3.682 10 O -0.468 6.468 11 N -0.350 5.350 12 C 0.049 3.951 13 H 0.087 0.913 14 C -0.162 4.162 15 C -0.126 4.126 16 C 0.020 3.980 17 H 0.013 0.987 18 C -0.563 4.563 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.563 5.563 22 Si 0.779 3.221 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.148 4.148 27 C 0.027 3.973 28 N -0.308 5.308 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.183 0.817 33 H 0.208 0.792 34 H 0.192 0.808 35 H 0.250 0.750 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.367 0.065 20.282 25.446 hybrid contribution 1.393 1.301 -1.129 2.215 sum -13.974 1.366 19.153 23.748 Atomic orbital electron populations 1.23222 0.73833 1.05271 1.02891 1.86011 1.25371 1.23291 1.86978 1.20963 0.86370 0.85411 0.89558 1.67400 1.08235 1.31950 1.21425 1.23211 1.00093 0.85482 0.83594 1.20754 0.95980 0.96389 1.07819 1.22401 0.90942 0.92692 0.95940 1.23240 1.01430 1.01877 0.95927 1.19244 0.80399 0.85269 0.83308 1.90843 1.48860 1.34675 1.72401 1.46155 1.25277 1.30725 1.32876 1.21346 0.95241 0.92311 0.86183 0.91311 1.22691 0.97660 0.99391 0.96461 1.22271 0.95122 0.97598 0.97586 1.19499 0.93398 0.93886 0.91209 0.98670 1.21559 1.10779 1.29737 0.94200 0.92013 1.25806 0.99244 0.97953 0.95991 1.70113 1.39893 1.46213 1.00036 0.85623 0.79757 0.78723 0.77951 1.20598 1.21494 1.18515 1.22411 0.93058 1.00986 0.98299 1.23750 0.91786 0.94721 0.86993 1.67998 1.40947 0.99541 1.22363 0.91249 0.92298 0.85297 0.81739 0.79180 0.80791 0.75042 0.92978 0.92647 0.94861 0.93723 0.93291 0.90545 0.92283 0.77207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.35 113.37 1.17 1.91 16 2 O -0.31 -8.76 10.55 -86.20 -0.91 -9.67 16 3 C 0.48 14.34 8.48 180.48 1.53 15.87 16 4 N -0.56 -18.13 10.44 -312.18 -3.26 -21.39 16 5 C 0.24 6.43 8.02 85.17 0.68 7.11 16 6 C -0.20 -4.09 4.43 -19.97 -0.09 -4.18 16 7 C 0.00 0.01 9.84 23.82 0.23 0.24 16 8 C -0.20 -2.99 9.94 23.60 0.23 -2.76 16 9 C 0.53 13.46 6.91 86.33 0.60 14.05 16 10 O -0.59 -19.62 12.04 -4.41 -0.05 -19.67 16 11 N -0.70 -18.77 5.04 -443.46 -2.24 -21.00 16 12 C 0.15 5.33 3.22 45.71 0.15 5.48 16 13 H 0.07 2.52 7.61 -2.38 -0.02 2.50 16 14 C -0.12 -4.79 6.52 31.67 0.21 -4.59 16 15 C -0.09 -4.02 5.77 32.01 0.18 -3.83 16 16 C 0.04 1.87 2.73 -10.34 -0.03 1.85 16 17 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 18 C -0.52 -27.50 8.47 25.60 0.22 -27.28 16 19 H 0.06 3.08 7.54 -2.91 -0.02 3.06 16 20 C 0.01 0.46 5.35 84.65 0.45 0.91 16 21 N -0.92 -53.43 12.30 21.45 0.26 -53.17 16 22 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 26 C -0.11 -4.14 6.13 31.32 0.19 -3.94 16 27 C 0.19 3.64 11.10 85.17 0.95 4.59 16 28 N -0.58 -14.44 9.18 -312.18 -2.87 -17.31 16 29 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.17 4.08 7.37 -2.91 -0.02 4.06 16 33 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.41 9.12 8.28 -92.71 -0.77 8.35 16 36 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 38 H 0.03 1.72 7.57 -2.39 -0.02 1.70 16 39 H 0.04 2.03 8.06 -2.39 -0.02 2.01 16 40 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.08 2.66 7.12 -2.38 -0.02 2.64 16 42 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -75.26 360.48 -0.09 -75.35 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.26 Total: 17.04 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.68 Total: 5.43 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -8.10 Total: -112.87 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.96 Total: -29.35 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -75.26 -0.09 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493706407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.784 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds