Wall clock time and date at job start Tue Mar 31 2020 11:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34652 * 116.99839 * 2 1 4 4 O 1.21508 * 120.00235 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99590 * 180.02562 * 3 2 1 6 6 C 1.39954 * 119.99399 * 184.62347 * 5 3 2 7 7 C 1.38881 * 120.07243 * 324.89127 * 6 5 3 8 8 C 1.38097 * 119.92930 * 180.02562 * 7 6 5 9 9 C 1.38301 * 120.06688 * 359.72588 * 8 7 6 10 10 C 1.38255 * 120.14048 * 0.54858 * 9 8 7 11 11 C 1.50699 * 119.96169 * 179.72735 * 10 9 8 12 12 N 1.46899 * 109.47465 * 269.72671 * 11 10 9 13 13 C 1.46896 * 111.00587 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47329 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.46859 * 304.99302 * 14 13 12 16 16 C 1.47194 * 109.47600 * 64.99741 * 14 13 12 17 17 N 9.78749 * 171.30687 * 65.23439 * 3 1 2 18 18 C 1.53001 * 109.47198 * 184.99988 * 14 13 12 19 19 C 1.50704 * 109.47363 * 174.99804 * 18 14 13 20 20 H 1.07994 * 119.99479 * 359.97438 * 19 18 14 21 21 C 1.37871 * 119.99897 * 179.72267 * 19 18 14 22 22 N 1.31520 * 119.99841 * 180.27887 * 21 19 18 23 23 Si 1.86804 * 120.00336 * 0.27510 * 21 19 18 24 24 H 1.48497 * 109.47043 * 89.99855 * 23 21 19 25 25 H 1.48492 * 109.47030 * 210.00079 * 23 21 19 26 26 H 1.48502 * 109.46984 * 330.00222 * 23 21 19 27 27 C 1.38132 * 120.07043 * 359.45253 * 10 9 8 28 28 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47132 * 299.99954 * 1 2 3 30 30 H 1.09004 * 109.47280 * 60.00397 * 1 2 3 31 31 H 0.97000 * 120.00456 * 4.62232 * 5 3 2 32 32 H 1.08003 * 120.03219 * 359.97438 * 7 6 5 33 33 H 1.07996 * 119.96122 * 180.02562 * 8 7 6 34 34 H 1.08005 * 119.92366 * 180.27580 * 9 8 7 35 35 H 1.09007 * 109.46947 * 149.72410 * 11 10 9 36 36 H 1.09003 * 109.47183 * 29.72554 * 11 10 9 37 37 H 1.00900 * 111.00239 * 56.04072 * 12 11 10 38 38 H 1.09002 * 109.47438 * 59.99327 * 13 12 11 39 39 H 1.09003 * 109.46512 * 300.00138 * 13 12 11 40 40 H 1.08996 * 109.47219 * 54.99277 * 18 14 13 41 41 H 1.09000 * 109.46706 * 294.99747 * 18 14 13 42 42 H 0.97002 * 119.99698 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.03296 * 180.25326 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0448 2.5133 0.0972 7 6 3.4817 3.6319 -0.5031 8 6 4.1116 4.8570 -0.4053 9 6 5.2990 4.9716 0.2944 10 6 5.8650 3.8588 0.8883 11 6 7.1622 3.9872 1.6445 12 7 8.2878 3.7598 0.7284 13 6 9.5717 3.8766 1.4325 14 6 10.7173 3.6345 0.4477 15 1 10.5770 2.6715 -0.0432 16 6 10.7292 4.7038 -0.5638 17 7 10.7386 5.5275 -1.3433 18 6 12.0476 3.6326 1.2034 19 6 13.1631 3.2729 0.2560 20 1 12.9448 3.0660 -0.7812 21 6 14.4627 3.2132 0.7124 22 7 15.4369 2.9046 -0.1156 23 14 14.8401 3.5705 2.5067 24 1 14.7704 2.3095 3.2878 25 1 16.2032 4.1484 2.6202 26 1 13.8465 4.5376 3.0383 27 6 5.2399 2.6307 0.7941 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9374 0.4595 -0.0686 32 1 2.5525 3.5436 -1.0466 33 1 3.6739 5.7272 -0.8716 34 1 5.7874 5.9317 0.3732 35 1 7.1905 3.2483 2.4454 36 1 7.2370 4.9878 2.0705 37 1 8.2474 4.3909 -0.0578 38 1 9.6165 3.1367 2.2317 39 1 9.6633 4.8763 1.8573 40 1 12.0061 2.9010 2.0103 41 1 12.2301 4.6231 1.6202 42 1 16.3512 2.8622 0.2055 43 1 5.6805 1.7626 1.2617 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495808329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:29 Heat of formation + Delta-G solvation = -51.869153 kcal Electronic energy + Delta-G solvation = -24592.809445 eV Core-core repulsion = 20830.100166 eV Total energy + Delta-G solvation = -3762.709279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98679 -40.32026 -38.89790 -37.82298 -36.68713 -35.95979 -35.30646 -33.77492 -31.95782 -30.92157 -28.89156 -28.31728 -26.17182 -24.09171 -23.69978 -23.38496 -23.04324 -21.50990 -20.00918 -18.94052 -18.48198 -18.19133 -17.74453 -17.56125 -16.86534 -16.77225 -16.42138 -15.86025 -15.63276 -15.16706 -14.98541 -14.79732 -14.66579 -14.59571 -14.37602 -14.12125 -13.95594 -13.66283 -13.44382 -13.16134 -13.04211 -12.98682 -12.73390 -12.49128 -12.41176 -12.15407 -12.05905 -11.87066 -11.73503 -11.64522 -11.49679 -11.31880 -11.24504 -10.70642 -9.78160 -9.35870 -9.17561 -8.22422 -6.28004 0.25041 0.41944 1.04275 1.44858 1.47771 1.57829 1.59697 1.97912 1.99347 2.43265 2.75145 3.13802 3.14571 3.27132 3.38786 3.83975 3.98389 4.13802 4.23838 4.29705 4.35100 4.38081 4.39341 4.47319 4.52978 4.62573 4.69777 4.75361 4.82108 4.93764 5.00953 5.03508 5.17294 5.28246 5.29545 5.34816 5.50421 5.55784 5.66046 5.66383 6.00323 6.08806 6.21359 6.28546 6.34104 6.77178 6.83206 7.11169 7.36438 8.94522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.002062 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.841619 B =13578.766231 C =14056.006317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.368 6.368 3 C 0.645 3.355 4 O -0.586 6.586 5 N -0.639 5.639 6 C 0.140 3.860 7 C -0.135 4.135 8 C -0.108 4.108 9 C -0.130 4.130 10 C -0.067 4.067 11 C 0.100 3.900 12 N -0.690 5.690 13 C 0.075 3.925 14 C 0.023 3.977 15 H 0.119 0.881 16 C 0.248 3.752 17 N -0.508 5.508 18 C -0.003 4.003 19 C -0.531 4.531 20 H 0.027 0.973 21 C 0.000 4.000 22 N -0.955 5.955 23 Si 0.951 3.049 24 H -0.256 1.256 25 H -0.298 1.298 26 H -0.236 1.236 27 C -0.114 4.114 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.431 0.569 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.334 0.666 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.381 -5.072 7.720 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.399 3.601 4 O -0.476 6.476 5 N -0.292 5.292 6 C 0.047 3.953 7 C -0.156 4.156 8 C -0.127 4.127 9 C -0.149 4.149 10 C -0.068 4.068 11 C -0.028 4.028 12 N -0.321 5.321 13 C -0.054 4.054 14 C 0.001 3.999 15 H 0.137 0.863 16 C -0.068 4.068 17 N -0.185 5.185 18 C -0.042 4.042 19 C -0.569 4.569 20 H 0.046 0.954 21 C -0.197 4.197 22 N -0.596 5.596 23 Si 0.773 3.227 24 H -0.181 1.181 25 H -0.225 1.225 26 H -0.158 1.158 27 C -0.134 4.134 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -30.673 -4.166 6.615 31.654 hybrid contribution 0.916 0.501 0.162 1.056 sum -29.758 -3.665 6.777 30.739 Atomic orbital electron populations 1.23576 0.72234 1.05929 1.02802 1.86275 1.26158 1.29338 1.86392 1.18278 0.83420 0.82598 0.75779 1.90990 1.65191 1.35693 1.55728 1.41854 1.03169 1.09589 1.74542 1.17572 0.94246 0.84365 0.99101 1.21311 1.01064 0.92821 1.00373 1.21201 0.95319 0.97375 0.98797 1.21317 0.96090 0.99155 0.98309 1.19694 0.96068 0.92636 0.98413 1.20938 0.85962 1.01665 0.94217 1.60576 1.01606 1.58997 1.10890 1.22037 0.85775 1.02213 0.95417 1.19134 0.97203 0.92691 0.90907 0.86300 1.29693 0.90265 0.93541 0.93303 1.80972 1.11588 1.13614 1.12337 1.19590 0.90078 0.98521 0.95984 1.21426 0.92448 1.46703 0.96281 0.95441 1.26082 0.96076 0.94374 1.03125 1.70103 1.00750 1.50814 1.37954 0.85659 0.77656 0.80167 0.79186 1.18084 1.22457 1.15850 1.20919 0.94631 0.98826 0.99039 0.84375 0.91834 0.91814 0.72950 0.85667 0.84325 0.84996 0.87951 0.93207 0.84880 0.86229 0.93844 0.91617 0.95476 0.92743 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.56 113.37 1.20 1.65 16 2 O -0.37 -5.61 10.62 -55.62 -0.59 -6.20 16 3 C 0.64 12.67 8.59 129.79 1.12 13.79 16 4 O -0.59 -14.93 13.57 19.81 0.27 -14.66 16 5 N -0.64 -10.46 5.34 -429.45 -2.30 -12.76 16 6 C 0.14 2.73 6.30 38.14 0.24 2.97 16 7 C -0.14 -2.94 8.70 22.39 0.19 -2.74 16 8 C -0.11 -2.09 10.04 22.25 0.22 -1.87 16 9 C -0.13 -2.39 9.69 22.29 0.22 -2.18 16 10 C -0.07 -1.20 5.39 -19.89 -0.11 -1.30 16 11 C 0.10 1.61 5.81 85.56 0.50 2.11 16 12 N -0.69 -14.28 6.49 -517.94 -3.36 -17.64 16 13 C 0.08 1.65 5.12 86.30 0.44 2.10 16 14 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 15 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 16 C 0.25 9.55 12.97 89.46 1.16 10.71 16 17 N -0.51 -21.88 18.52 19.98 0.37 -21.51 16 18 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 19 C -0.53 -28.29 9.15 25.60 0.23 -28.05 16 20 H 0.03 1.67 7.84 -2.91 -0.02 1.64 16 21 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 22 N -0.96 -58.95 13.96 21.45 0.30 -58.65 16 23 Si 0.95 40.86 27.47 68.60 1.88 42.74 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 27 C -0.11 -1.95 9.62 22.39 0.22 -1.74 16 28 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.43 4.57 8.93 -92.71 -0.83 3.75 16 32 H 0.13 3.00 6.22 -2.91 -0.02 2.98 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.10 1.32 8.08 -2.38 -0.02 1.30 16 36 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.33 7.89 7.80 -89.69 -0.70 7.19 16 38 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 41 H 0.03 1.05 7.19 -2.39 -0.02 1.04 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.96 373.09 2.21 -72.76 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.54 Total: 19.34 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 6.17 Total: -3.43 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.98 Total: -110.55 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.32 Total: -20.86 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Total: -74.96 2.21 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495808329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds