Wall clock time and date at job start Tue Mar 31 2020 11:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34654 * 116.99729 * 2 1 4 4 O 1.21510 * 119.99727 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99717 * 180.02562 * 3 2 1 6 6 C 1.39951 * 119.99711 * 184.62421 * 5 3 2 7 7 C 1.38888 * 120.06938 * 324.89021 * 6 5 3 8 8 C 1.38093 * 119.93019 * 180.02562 * 7 6 5 9 9 C 1.38301 * 120.07082 * 359.72000 * 8 7 6 10 10 C 1.38264 * 120.13540 * 0.55343 * 9 8 7 11 11 C 1.50702 * 119.96030 * 179.71976 * 10 9 8 12 12 N 1.46900 * 109.47467 * 269.72303 * 11 10 9 13 13 C 1.46896 * 111.00101 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47352 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.47198 * 54.99365 * 14 13 12 16 16 C 1.47205 * 109.46738 * 295.00064 * 14 13 12 17 17 N 9.25342 * 172.29872 * 341.00843 * 2 1 3 18 18 C 1.52998 * 109.47300 * 174.99884 * 14 13 12 19 19 C 1.50701 * 109.46872 * 184.99806 * 18 14 13 20 20 H 1.08003 * 120.00239 * 359.97438 * 19 18 14 21 21 C 1.37879 * 120.00014 * 180.02562 * 19 18 14 22 22 N 1.31517 * 119.99571 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00356 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46891 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47386 * 119.99663 * 23 21 19 26 26 H 1.48499 * 109.47111 * 239.99961 * 23 21 19 27 27 C 1.38134 * 120.07169 * 359.45140 * 10 9 8 28 28 H 1.09000 * 109.47584 * 299.99802 * 1 2 3 29 29 H 1.09004 * 109.47111 * 60.00444 * 1 2 3 30 30 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00268 * 4.61749 * 5 3 2 32 32 H 1.08003 * 120.03220 * 0.04133 * 7 6 5 33 33 H 1.07998 * 119.96435 * 180.02562 * 8 7 6 34 34 H 1.07994 * 119.93159 * 180.27547 * 9 8 7 35 35 H 1.08998 * 109.47327 * 29.72914 * 11 10 9 36 36 H 1.09007 * 109.46575 * 149.72899 * 11 10 9 37 37 H 1.00898 * 111.00401 * 303.96011 * 12 11 10 38 38 H 1.09007 * 109.47344 * 300.00024 * 13 12 11 39 39 H 1.09000 * 109.47344 * 60.00365 * 13 12 11 40 40 H 1.09000 * 109.47320 * 304.99641 * 18 14 13 41 41 H 1.09003 * 109.46769 * 65.00152 * 18 14 13 42 42 H 0.97002 * 119.99577 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.03793 * 180.25314 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0447 2.5134 0.0972 7 6 3.4815 3.6320 -0.5032 8 6 4.1114 4.8571 -0.4054 9 6 5.2988 4.9719 0.2943 10 6 5.8648 3.8591 0.8884 11 6 7.1620 3.9875 1.6446 12 7 8.2876 3.7600 0.7284 13 6 9.5715 3.8769 1.4326 14 6 10.7172 3.6347 0.4479 15 1 10.6208 4.3171 -0.3966 16 6 10.6632 2.2453 -0.0354 17 7 10.6220 1.1725 -0.4035 18 6 12.0540 3.8787 1.1509 19 6 13.1759 3.7603 0.1516 20 1 12.9573 3.5333 -0.8814 21 6 14.4815 3.9407 0.5564 22 7 14.7477 4.2166 1.8144 23 14 15.8721 3.7947 -0.6823 24 1 15.3115 3.4807 -2.0210 25 1 16.6158 5.0785 -0.7452 26 1 16.7945 2.7083 -0.2651 27 6 5.2398 2.6308 0.7941 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9373 0.4596 -0.0685 32 1 2.5518 3.5439 -1.0457 33 1 3.6737 5.7273 -0.8717 34 1 5.7871 5.9319 0.3732 35 1 7.2368 4.9880 2.0705 36 1 7.1904 3.2485 2.4454 37 1 8.2065 2.8641 0.2714 38 1 9.6632 4.8766 1.8574 39 1 9.6163 3.1370 2.2317 40 1 12.0588 4.8781 1.5858 41 1 12.1902 3.1385 1.9394 42 1 15.6662 4.3439 2.0991 43 1 5.6804 1.7627 1.2618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495808330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:33 Heat of formation + Delta-G solvation = -32.672688 kcal Electronic energy + Delta-G solvation = -24580.262239 eV Core-core repulsion = 20818.385381 eV Total energy + Delta-G solvation = -3761.876858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25417 -39.56656 -37.61377 -36.96765 -35.59770 -34.92428 -33.65378 -32.16584 -30.68926 -30.10377 -27.85204 -26.99156 -24.96322 -23.30896 -22.73417 -22.26740 -21.79803 -20.75474 -19.30157 -17.72795 -17.05014 -16.87240 -16.71582 -16.51536 -16.09570 -15.57083 -15.11189 -14.91883 -14.54063 -14.38324 -14.12560 -13.85095 -13.55565 -13.23975 -12.92651 -12.85833 -12.56226 -12.48969 -12.22607 -12.10526 -11.78805 -11.72086 -11.35556 -11.26680 -11.25705 -11.05129 -10.93189 -10.75702 -10.54153 -10.49869 -10.27972 -9.59287 -9.24314 -9.01206 -8.47232 -8.43239 -8.34384 -6.10916 -4.13880 1.05360 1.18713 1.68791 2.35834 3.27800 3.36080 3.40741 3.53046 3.56617 3.61623 3.75165 4.32789 4.43091 4.66745 4.67845 4.68869 4.76561 4.79401 4.96880 5.00118 5.15658 5.18527 5.27285 5.31631 5.43071 5.48898 5.60241 5.69018 5.70863 5.87617 6.02467 6.10820 6.12733 6.32253 6.34458 6.47864 6.52697 6.80452 6.89094 7.02817 7.37043 7.42514 7.51433 7.80736 7.84466 8.21821 8.37825 8.90970 9.51729 10.99961 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.002005 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.116361 B =13959.905027 C =14498.778852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.369 6.369 3 C 0.648 3.352 4 O -0.554 6.554 5 N -0.649 5.649 6 C 0.149 3.851 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.104 4.104 10 C -0.060 4.060 11 C 0.097 3.903 12 N -0.686 5.686 13 C 0.067 3.933 14 C 0.006 3.994 15 H 0.112 0.888 16 C 0.241 3.759 17 N -0.477 5.477 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 C -0.133 4.133 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.418 0.582 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.339 0.661 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.262 0.738 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.257 -2.306 -0.525 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.402 3.598 4 O -0.442 6.442 5 N -0.300 5.300 6 C 0.057 3.943 7 C -0.140 4.140 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.061 4.061 11 C -0.032 4.032 12 N -0.317 5.317 13 C -0.063 4.063 14 C -0.015 4.015 15 H 0.129 0.871 16 C -0.075 4.075 17 N -0.154 5.154 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.154 4.154 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.255 0.745 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.610 -2.836 -1.165 27.780 hybrid contribution 1.052 -0.980 -0.018 1.438 sum -26.558 -3.816 -1.184 26.856 Atomic orbital electron populations 1.23269 0.73759 1.03812 1.02993 1.86257 1.24675 1.30567 1.86793 1.18093 0.83107 0.82464 0.76185 1.91011 1.64409 1.34534 1.54240 1.41926 1.03462 1.09420 1.75216 1.17389 0.93817 0.84077 0.99040 1.21268 1.01112 0.91909 0.99681 1.21067 0.95247 0.97086 0.98808 1.21112 0.95247 0.98774 0.97196 1.19590 0.95787 0.92442 0.98296 1.20899 0.87177 1.02250 0.92872 1.60624 1.01241 1.38687 1.31130 1.22113 0.86874 1.02441 0.94884 1.19339 0.98242 0.84441 0.99526 0.87058 1.29288 0.91023 0.95023 0.92196 1.80985 1.10896 1.13084 1.10424 1.19172 0.87218 0.98533 0.95746 1.21187 0.91166 1.48763 0.95268 0.92433 1.24960 0.98924 0.94924 0.95231 1.69949 1.19736 1.48098 1.15224 0.86531 0.82178 0.77711 0.81638 1.19682 1.20816 1.21029 1.20763 0.95950 0.98269 1.00401 0.91584 0.91591 0.87664 0.74542 0.84457 0.85500 0.85309 0.89460 0.94273 0.84307 0.88849 0.94612 0.94138 0.95754 0.92857 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -3.16 10.62 -40.36 -0.43 -3.59 16 3 C 0.65 6.78 8.59 54.05 0.46 7.25 16 4 O -0.55 -7.15 13.57 -19.28 -0.26 -7.41 16 5 N -0.65 -5.97 5.34 -14.27 -0.08 -6.05 16 6 C 0.15 1.59 6.30 -83.69 -0.53 1.06 16 7 C -0.12 -1.33 8.70 -39.39 -0.34 -1.67 16 8 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 9 C -0.10 -1.05 9.70 -39.55 -0.38 -1.43 16 10 C -0.06 -0.63 5.39 -104.65 -0.56 -1.19 16 11 C 0.10 1.01 5.81 -4.98 -0.03 0.98 16 12 N -0.69 -8.60 6.49 -115.06 -0.75 -9.34 16 13 C 0.07 0.93 5.12 -3.83 -0.02 0.91 16 14 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 15 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 16 C 0.24 4.77 12.97 -20.79 -0.27 4.50 16 17 N -0.48 -10.18 18.53 42.11 0.78 -9.40 16 18 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -13.86 8.60 -34.44 -0.30 -14.15 16 20 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 23 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.13 -1.36 9.62 -39.40 -0.38 -1.73 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.42 2.81 8.93 -40.82 -0.36 2.44 16 32 H 0.14 1.61 6.22 -52.48 -0.33 1.28 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.34 4.50 7.80 -39.29 -0.31 4.19 16 38 H 0.09 1.21 8.14 -51.92 -0.42 0.78 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -32.21 376.70 -7.48 -39.69 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.02 Total: 2.25 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.12 Total: -3.45 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.69 Total: -49.37 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.69 Total: -11.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.21 -7.48 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495808330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.020 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds