Wall clock time and date at job start Tue Mar 31 2020 11:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34654 * 116.99729 * 2 1 4 4 O 1.21510 * 119.99727 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99717 * 180.02562 * 3 2 1 6 6 C 1.39951 * 119.99711 * 184.62421 * 5 3 2 7 7 C 1.38888 * 120.06938 * 324.89021 * 6 5 3 8 8 C 1.38093 * 119.93019 * 180.02562 * 7 6 5 9 9 C 1.38301 * 120.07082 * 359.72000 * 8 7 6 10 10 C 1.38264 * 120.13540 * 0.55343 * 9 8 7 11 11 C 1.50702 * 119.96030 * 179.71976 * 10 9 8 12 12 N 1.46900 * 109.47467 * 269.72303 * 11 10 9 13 13 C 1.46896 * 111.00101 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47352 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.47198 * 54.99365 * 14 13 12 16 16 C 1.47205 * 109.46738 * 295.00064 * 14 13 12 17 17 N 9.25342 * 172.29872 * 341.00843 * 2 1 3 18 18 C 1.52998 * 109.47300 * 174.99884 * 14 13 12 19 19 C 1.50701 * 109.46872 * 184.99806 * 18 14 13 20 20 H 1.08003 * 120.00239 * 359.97438 * 19 18 14 21 21 C 1.37879 * 120.00014 * 180.02562 * 19 18 14 22 22 N 1.31517 * 119.99571 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00356 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46891 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47386 * 119.99663 * 23 21 19 26 26 H 1.48499 * 109.47111 * 239.99961 * 23 21 19 27 27 C 1.38134 * 120.07169 * 359.45140 * 10 9 8 28 28 H 1.09000 * 109.47584 * 299.99802 * 1 2 3 29 29 H 1.09004 * 109.47111 * 60.00444 * 1 2 3 30 30 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00268 * 4.61749 * 5 3 2 32 32 H 1.08003 * 120.03220 * 0.04133 * 7 6 5 33 33 H 1.07998 * 119.96435 * 180.02562 * 8 7 6 34 34 H 1.07994 * 119.93159 * 180.27547 * 9 8 7 35 35 H 1.08998 * 109.47327 * 29.72914 * 11 10 9 36 36 H 1.09007 * 109.46575 * 149.72899 * 11 10 9 37 37 H 1.00898 * 111.00401 * 303.96011 * 12 11 10 38 38 H 1.09007 * 109.47344 * 300.00024 * 13 12 11 39 39 H 1.09000 * 109.47344 * 60.00365 * 13 12 11 40 40 H 1.09000 * 109.47320 * 304.99641 * 18 14 13 41 41 H 1.09003 * 109.46769 * 65.00152 * 18 14 13 42 42 H 0.97002 * 119.99577 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.03793 * 180.25314 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0447 2.5134 0.0972 7 6 3.4815 3.6320 -0.5032 8 6 4.1114 4.8571 -0.4054 9 6 5.2988 4.9719 0.2943 10 6 5.8648 3.8591 0.8884 11 6 7.1620 3.9875 1.6446 12 7 8.2876 3.7600 0.7284 13 6 9.5715 3.8769 1.4326 14 6 10.7172 3.6347 0.4479 15 1 10.6208 4.3171 -0.3966 16 6 10.6632 2.2453 -0.0354 17 7 10.6220 1.1725 -0.4035 18 6 12.0540 3.8787 1.1509 19 6 13.1759 3.7603 0.1516 20 1 12.9573 3.5333 -0.8814 21 6 14.4815 3.9407 0.5564 22 7 14.7477 4.2166 1.8144 23 14 15.8721 3.7947 -0.6823 24 1 15.3115 3.4807 -2.0210 25 1 16.6158 5.0785 -0.7452 26 1 16.7945 2.7083 -0.2651 27 6 5.2398 2.6308 0.7941 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9373 0.4596 -0.0685 32 1 2.5518 3.5439 -1.0457 33 1 3.6737 5.7273 -0.8717 34 1 5.7871 5.9319 0.3732 35 1 7.2368 4.9880 2.0705 36 1 7.1904 3.2485 2.4454 37 1 8.2065 2.8641 0.2714 38 1 9.6632 4.8766 1.8574 39 1 9.6163 3.1370 2.2317 40 1 12.0588 4.8781 1.5858 41 1 12.1902 3.1385 1.9394 42 1 15.6662 4.3439 2.0991 43 1 5.6804 1.7627 1.2618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495808330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:32 Heat of formation + Delta-G solvation = -53.757729 kcal Electronic energy + Delta-G solvation = -24581.176555 eV Core-core repulsion = 20818.385381 eV Total energy + Delta-G solvation = -3762.791174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01430 -40.32949 -38.86135 -37.83637 -36.68114 -35.96785 -35.36409 -33.65270 -31.80111 -30.91570 -28.56823 -28.31592 -26.19290 -24.10918 -23.93303 -23.52338 -23.04602 -21.55537 -20.03709 -18.65616 -18.36866 -18.19403 -17.76774 -17.55465 -16.94806 -16.63902 -16.45120 -16.00227 -15.70889 -15.14215 -15.02456 -14.75906 -14.61135 -14.51449 -14.26807 -14.18139 -13.84277 -13.56673 -13.34778 -13.12940 -13.03996 -12.98701 -12.64738 -12.60639 -12.43807 -12.31077 -12.18129 -11.90753 -11.89390 -11.73402 -11.37751 -11.30711 -11.11722 -10.53900 -9.82874 -9.33857 -9.19005 -8.18271 -6.25833 0.27131 0.39529 1.01322 1.39816 1.43105 1.53219 1.57367 1.97618 1.99785 2.42555 2.75785 3.11212 3.17204 3.28930 3.39216 3.84346 3.94603 4.15960 4.25400 4.28243 4.32892 4.37075 4.43755 4.46829 4.53904 4.66379 4.68339 4.74394 4.85132 5.00167 5.03105 5.04921 5.15045 5.27375 5.34594 5.50410 5.57157 5.65813 5.69889 5.81716 5.98561 6.07187 6.17190 6.23505 6.34680 6.77995 6.89808 7.07240 7.42634 8.92639 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.002005 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.116361 B =13959.905027 C =14498.778852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.370 6.370 3 C 0.645 3.355 4 O -0.583 6.583 5 N -0.641 5.641 6 C 0.139 3.861 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.108 4.108 10 C -0.067 4.067 11 C 0.099 3.901 12 N -0.686 5.686 13 C 0.078 3.922 14 C 0.018 3.982 15 H 0.123 0.877 16 C 0.251 3.749 17 N -0.505 5.505 18 C 0.038 3.962 19 C -0.537 4.537 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.948 3.052 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.286 1.286 27 C -0.136 4.136 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.138 0.862 31 H 0.429 0.571 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.335 0.665 38 H 0.110 0.890 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.815 -2.078 -0.767 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.400 3.600 4 O -0.473 6.473 5 N -0.294 5.294 6 C 0.046 3.954 7 C -0.155 4.155 8 C -0.124 4.124 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.029 4.029 12 N -0.316 5.316 13 C -0.052 4.052 14 C -0.004 4.004 15 H 0.140 0.860 16 C -0.065 4.065 17 N -0.183 5.183 18 C -0.001 4.001 19 C -0.576 4.576 20 H 0.071 0.929 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.774 3.226 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.212 1.212 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.267 0.733 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.152 0.848 38 H 0.128 0.872 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.072 0.928 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.175 -2.628 -1.414 28.333 hybrid contribution 1.157 -1.075 0.052 1.580 sum -27.018 -3.703 -1.361 27.305 Atomic orbital electron populations 1.23584 0.72149 1.05933 1.02884 1.86275 1.26253 1.29400 1.86407 1.18258 0.83355 0.82631 0.75804 1.90987 1.65099 1.35597 1.55645 1.41880 1.03264 1.09595 1.74652 1.17526 0.94140 0.84477 0.99235 1.21333 1.01075 0.92785 1.00270 1.21296 0.95216 0.97292 0.98598 1.21324 0.95213 0.99342 0.96800 1.19677 0.95890 0.92693 0.98538 1.20938 0.86164 1.03233 0.92536 1.60599 1.01147 1.38407 1.31495 1.21958 0.86241 1.03381 0.93612 1.19247 0.97381 0.83477 1.00261 0.85974 1.29655 0.90186 0.95244 0.91423 1.80986 1.11800 1.14003 1.11491 1.18998 0.88868 0.97582 0.94677 1.21600 0.92419 1.47769 0.95776 0.92861 1.25702 1.01318 0.95050 0.96759 1.70036 1.20243 1.49336 1.16645 0.85656 0.79555 0.77830 0.79594 1.19465 1.19862 1.21207 1.20905 0.95739 0.98775 1.00236 0.91805 0.91663 0.84421 0.73254 0.85539 0.83710 0.83864 0.88134 0.93582 0.84823 0.87194 0.94595 0.94329 0.98052 0.92765 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 10.56 113.37 1.20 1.68 16 2 O -0.37 -6.06 10.62 -55.63 -0.59 -6.65 16 3 C 0.65 13.37 8.59 129.79 1.12 14.49 16 4 O -0.58 -15.21 13.57 19.81 0.27 -14.94 16 5 N -0.64 -11.50 5.34 -429.45 -2.29 -13.79 16 6 C 0.14 2.87 6.30 38.14 0.24 3.11 16 7 C -0.13 -2.94 8.70 22.39 0.19 -2.74 16 8 C -0.11 -1.97 10.04 22.25 0.22 -1.75 16 9 C -0.11 -1.97 9.70 22.29 0.22 -1.75 16 10 C -0.07 -1.28 5.39 -19.88 -0.11 -1.38 16 11 C 0.10 1.82 5.81 85.56 0.50 2.32 16 12 N -0.69 -15.62 6.49 -517.93 -3.36 -18.98 16 13 C 0.08 2.01 5.12 86.30 0.44 2.46 16 14 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 15 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 16 C 0.25 9.68 12.97 89.46 1.16 10.84 16 17 N -0.51 -21.22 18.53 19.99 0.37 -20.85 16 18 C 0.04 1.68 4.42 29.85 0.13 1.81 16 19 C -0.54 -28.09 8.60 25.60 0.22 -27.87 16 20 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 21 C 0.01 0.58 5.46 84.65 0.46 1.04 16 22 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 23 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 C -0.14 -2.59 9.62 22.39 0.22 -2.38 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.43 5.44 8.93 -92.71 -0.83 4.61 16 32 H 0.13 3.02 6.22 -2.91 -0.02 3.00 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.05 0.80 8.08 -2.38 -0.02 0.78 16 37 H 0.33 8.24 7.80 -89.70 -0.70 7.54 16 38 H 0.11 2.52 8.14 -2.38 -0.02 2.51 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -68.10 376.70 2.40 -65.69 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.48 Total: 15.91 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.18 Total: 0.48 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.00 Total: -105.71 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.32 Total: -21.59 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.10 2.40 -65.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495808330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.936 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds