Wall clock time and date at job start Tue Mar 31 2020 11:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34638 * 117.00182 * 2 1 4 4 O 1.21511 * 119.99534 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99910 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.46976 * 179.97438 * 6 5 3 8 8 C 1.38289 * 119.92660 * 90.00198 * 7 6 5 9 9 C 1.38100 * 120.07658 * 179.97438 * 8 7 6 10 10 C 1.38906 * 119.92505 * 0.02562 * 9 8 7 11 11 N 1.39678 * 120.07817 * 179.97438 * 10 9 8 12 12 C 1.46500 * 120.00264 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46949 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00252 * 13 12 11 15 15 C 1.47204 * 109.47042 * 65.00020 * 13 12 11 16 16 N 9.75533 * 173.66311 * 10.27747 * 5 1 2 17 17 C 1.52996 * 109.47153 * 184.99976 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.38910 * 119.85309 * 0.24735 * 10 9 8 27 27 C 1.38110 * 119.92265 * 359.49920 * 26 10 9 28 28 H 1.09002 * 109.46906 * 59.99996 * 1 2 3 29 29 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46779 * 299.99959 * 1 2 3 31 31 H 0.96998 * 120.00163 * 359.97438 * 5 3 2 32 32 H 1.08999 * 109.46948 * 59.99689 * 6 5 3 33 33 H 1.08998 * 109.46652 * 299.99820 * 6 5 3 34 34 H 1.07999 * 119.95908 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.03616 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99131 * 359.97438 * 11 10 9 37 37 H 1.08997 * 109.46786 * 59.99855 * 12 11 10 38 38 H 1.08996 * 109.47381 * 300.00053 * 12 11 10 39 39 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 40 40 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.04136 * 179.72708 * 26 10 9 43 43 H 1.07997 * 119.96425 * 180.25307 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0010 8 6 6.2523 2.2870 -1.1994 9 6 7.6215 2.1065 -1.2029 10 6 8.3115 2.0158 -0.0008 11 7 9.6963 1.8327 -0.0006 12 6 10.4225 1.7378 1.2682 13 6 11.9136 1.5397 0.9887 14 1 12.0503 0.6718 0.3437 15 6 12.4509 2.7366 0.3211 16 7 12.8648 3.6620 -0.1936 17 6 12.6545 1.3161 2.3085 18 6 14.1005 0.9995 2.0254 19 1 14.4556 0.9619 1.0061 20 6 14.9715 0.7638 3.0680 21 7 14.5392 0.8099 4.3092 22 14 16.7654 0.3790 2.7174 23 1 16.9960 0.3873 1.2504 24 1 17.6264 1.4048 3.3592 25 1 17.1004 -0.9606 3.2639 26 6 7.6207 2.1018 1.2013 27 6 6.2522 2.2876 1.1976 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9375 0.4566 -0.0005 32 1 3.7818 3.1327 0.8888 33 1 3.7812 3.1321 -0.8911 34 1 5.7151 2.3572 -2.1337 35 1 8.1550 2.0352 -2.1393 36 1 10.1770 1.7684 -0.8407 37 1 10.0447 0.8905 1.8404 38 1 10.2781 2.6550 1.8390 39 1 12.1986 0.4837 2.8446 40 1 12.5926 2.2180 2.9173 41 1 15.1519 0.6438 5.0426 42 1 8.1536 2.0272 2.1376 43 1 5.7150 2.3586 2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497242193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:36 Heat of formation + Delta-G solvation = -41.099538 kcal Electronic energy + Delta-G solvation = -24275.975770 eV Core-core repulsion = 20513.733497 eV Total energy + Delta-G solvation = -3762.242273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68626 -39.68116 -37.60686 -36.89754 -35.67891 -34.64625 -33.65199 -32.01781 -31.00236 -30.10471 -27.99776 -26.94337 -25.16368 -23.98024 -22.47525 -21.88542 -21.64086 -20.97823 -19.12170 -17.63522 -17.19875 -16.93563 -16.82300 -16.63555 -15.91828 -15.53118 -14.87079 -14.74660 -14.51615 -14.31822 -14.09713 -13.82140 -13.71378 -13.46383 -13.24061 -12.98150 -12.68511 -12.56761 -12.38047 -12.25885 -12.04386 -11.54569 -11.48047 -11.21570 -11.08793 -11.04233 -10.93747 -10.85002 -10.64689 -10.47938 -10.04307 -9.76086 -9.48279 -9.36673 -9.01151 -8.56372 -7.45424 -6.20345 -4.24405 1.26347 1.37499 2.11792 2.56082 3.21511 3.30169 3.31748 3.36529 3.41681 3.51857 3.74059 4.13964 4.31969 4.57112 4.57647 4.72530 4.81641 4.88737 4.93473 5.07325 5.14450 5.18023 5.19550 5.32110 5.38992 5.49234 5.57858 5.69962 5.85472 5.92658 5.94363 6.08500 6.11160 6.22121 6.29064 6.30588 6.54421 6.75763 7.14081 7.26404 7.29159 7.36097 7.67254 7.73815 8.05584 8.09060 8.23520 8.79797 9.41971 10.90383 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.001853 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.619175 B =15108.331432 C =15690.394241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.643 3.357 4 O -0.576 6.576 5 N -0.703 5.703 6 C 0.190 3.810 7 C -0.188 4.188 8 C -0.047 4.047 9 C -0.204 4.204 10 C 0.237 3.763 11 N -0.743 5.743 12 C 0.128 3.872 13 C -0.002 4.002 14 H 0.108 0.892 15 C 0.236 3.764 16 N -0.465 5.465 17 C 0.034 3.966 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.201 4.201 27 C -0.045 4.045 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.409 0.591 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.070 -2.954 -7.803 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.396 3.604 4 O -0.466 6.466 5 N -0.362 5.362 6 C 0.069 3.931 7 C -0.191 4.191 8 C -0.067 4.067 9 C -0.226 4.226 10 C 0.131 3.869 11 N -0.370 5.370 12 C 0.004 3.996 13 C -0.024 4.024 14 H 0.126 0.874 15 C -0.081 4.081 16 N -0.142 5.142 17 C -0.005 4.005 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.223 4.223 27 C -0.065 4.065 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.674 -1.100 -8.196 25.076 hybrid contribution 1.349 -0.898 -0.166 1.629 sum -22.325 -1.998 -8.362 23.923 Atomic orbital electron populations 1.23184 0.74445 1.03435 1.02708 1.86254 1.24195 1.31261 1.87120 1.18242 0.83606 0.82128 0.76468 1.91002 1.64730 1.34918 1.55925 1.44983 1.02614 1.11000 1.77649 1.20051 0.87719 0.82404 1.02938 1.19375 0.93794 1.12156 0.93726 1.20721 0.93390 0.95450 0.97098 1.20577 0.94547 1.11130 0.96383 1.17956 0.83877 0.91145 0.93889 1.45025 1.03856 1.79257 1.08834 1.21589 0.89988 1.02448 0.85620 1.19477 0.92275 0.89682 1.00987 0.87389 1.29148 0.92434 0.94216 0.92283 1.81097 1.09749 1.11992 1.11329 1.19164 0.94798 0.98720 0.87827 1.21132 0.93642 1.48993 0.93074 0.92421 1.24953 0.98960 0.94984 0.95016 1.69939 1.35501 1.48865 0.98404 0.86514 0.84831 0.78044 0.78562 1.19704 1.20909 1.20758 1.20725 0.94484 1.10271 0.96868 1.20798 0.93538 0.94985 0.97139 0.91902 0.88005 0.91853 0.75610 0.90683 0.90770 0.86254 0.86174 0.76540 0.89943 0.91425 0.93943 0.95292 0.92701 0.85441 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.47 10.62 -40.32 -0.43 -3.89 16 3 C 0.64 6.93 8.75 54.06 0.47 7.41 16 4 O -0.58 -7.91 16.13 -19.28 -0.31 -8.22 16 5 N -0.70 -6.10 5.55 -66.47 -0.37 -6.47 16 6 C 0.19 1.64 5.79 -5.20 -0.03 1.61 16 7 C -0.19 -1.68 5.25 -104.59 -0.55 -2.23 16 8 C -0.05 -0.43 9.69 -39.61 -0.38 -0.81 16 9 C -0.20 -2.06 9.90 -39.38 -0.39 -2.45 16 10 C 0.24 2.67 6.65 -83.79 -0.56 2.11 16 11 N -0.74 -8.63 5.52 -58.64 -0.32 -8.95 16 12 C 0.13 1.65 4.28 -4.04 -0.02 1.64 16 13 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 14 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 15 C 0.24 4.43 13.46 -20.73 -0.28 4.15 16 16 N -0.47 -9.66 18.54 42.19 0.78 -8.88 16 17 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 18 C -0.53 -13.40 8.60 -34.44 -0.30 -13.69 16 19 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 22 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.20 -2.16 9.31 -39.38 -0.37 -2.52 16 27 C -0.05 -0.43 9.69 -39.61 -0.38 -0.81 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.41 2.96 8.57 -40.82 -0.35 2.61 16 32 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.40 4.41 8.23 -40.82 -0.34 4.07 16 37 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.13 1.32 6.73 -52.49 -0.35 0.97 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -31.53 379.09 -7.41 -38.94 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.04 Total: 2.20 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.14 Total: -2.25 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.83 Total: -48.08 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.74 Total: -12.12 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.53 -7.41 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497242193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.160 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds