Wall clock time and date at job start Tue Mar 31 2020 11:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34638 * 117.00182 * 2 1 4 4 O 1.21511 * 119.99534 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99910 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.46976 * 179.97438 * 6 5 3 8 8 C 1.38289 * 119.92660 * 90.00198 * 7 6 5 9 9 C 1.38100 * 120.07658 * 179.97438 * 8 7 6 10 10 C 1.38906 * 119.92505 * 0.02562 * 9 8 7 11 11 N 1.39678 * 120.07817 * 179.97438 * 10 9 8 12 12 C 1.46500 * 120.00264 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46949 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00252 * 13 12 11 15 15 C 1.47204 * 109.47042 * 65.00020 * 13 12 11 16 16 N 9.75533 * 173.66311 * 10.27747 * 5 1 2 17 17 C 1.52996 * 109.47153 * 184.99976 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.38910 * 119.85309 * 0.24735 * 10 9 8 27 27 C 1.38110 * 119.92265 * 359.49920 * 26 10 9 28 28 H 1.09002 * 109.46906 * 59.99996 * 1 2 3 29 29 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46779 * 299.99959 * 1 2 3 31 31 H 0.96998 * 120.00163 * 359.97438 * 5 3 2 32 32 H 1.08999 * 109.46948 * 59.99689 * 6 5 3 33 33 H 1.08998 * 109.46652 * 299.99820 * 6 5 3 34 34 H 1.07999 * 119.95908 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.03616 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99131 * 359.97438 * 11 10 9 37 37 H 1.08997 * 109.46786 * 59.99855 * 12 11 10 38 38 H 1.08996 * 109.47381 * 300.00053 * 12 11 10 39 39 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 40 40 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.04136 * 179.72708 * 26 10 9 43 43 H 1.07997 * 119.96425 * 180.25307 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0010 8 6 6.2523 2.2870 -1.1994 9 6 7.6215 2.1065 -1.2029 10 6 8.3115 2.0158 -0.0008 11 7 9.6963 1.8327 -0.0006 12 6 10.4225 1.7378 1.2682 13 6 11.9136 1.5397 0.9887 14 1 12.0503 0.6718 0.3437 15 6 12.4509 2.7366 0.3211 16 7 12.8648 3.6620 -0.1936 17 6 12.6545 1.3161 2.3085 18 6 14.1005 0.9995 2.0254 19 1 14.4556 0.9619 1.0061 20 6 14.9715 0.7638 3.0680 21 7 14.5392 0.8099 4.3092 22 14 16.7654 0.3790 2.7174 23 1 16.9960 0.3873 1.2504 24 1 17.6264 1.4048 3.3592 25 1 17.1004 -0.9606 3.2639 26 6 7.6207 2.1018 1.2013 27 6 6.2522 2.2876 1.1976 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9375 0.4566 -0.0005 32 1 3.7818 3.1327 0.8888 33 1 3.7812 3.1321 -0.8911 34 1 5.7151 2.3572 -2.1337 35 1 8.1550 2.0352 -2.1393 36 1 10.1770 1.7684 -0.8407 37 1 10.0447 0.8905 1.8404 38 1 10.2781 2.6550 1.8390 39 1 12.1986 0.4837 2.8446 40 1 12.5926 2.2180 2.9173 41 1 15.1519 0.6438 5.0426 42 1 8.1536 2.0272 2.1376 43 1 5.7150 2.3586 2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497242193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:35 Heat of formation + Delta-G solvation = -61.159138 kcal Electronic energy + Delta-G solvation = -24276.845620 eV Core-core repulsion = 20513.733497 eV Total energy + Delta-G solvation = -3763.112123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45989 -40.48382 -38.78468 -37.76191 -36.73754 -35.80414 -35.18663 -33.50469 -31.77120 -31.07515 -28.87861 -28.10720 -26.17237 -25.04759 -23.85409 -23.06278 -22.41651 -21.77932 -19.86102 -18.77380 -18.47663 -18.05220 -17.90168 -17.57729 -16.91461 -16.57159 -16.28231 -15.64374 -15.48919 -15.11326 -15.06341 -14.81615 -14.67682 -14.42946 -14.30569 -14.13624 -14.09689 -13.83610 -13.41043 -13.36480 -13.11206 -12.92482 -12.89679 -12.57528 -12.40737 -12.28765 -12.07546 -11.81059 -11.76745 -11.73674 -11.48619 -11.21240 -10.90209 -10.56502 -10.22674 -9.76023 -8.29442 -8.20983 -6.28814 0.50761 0.62351 1.38716 1.42722 1.42729 1.51771 1.74593 1.89559 1.92079 2.38794 2.53009 2.98771 3.13119 3.18396 3.48362 3.85573 3.93695 4.01709 4.21183 4.29131 4.38137 4.38817 4.41207 4.59128 4.63704 4.67775 4.74731 4.79191 4.86614 4.91150 4.99488 5.19837 5.22265 5.41733 5.45583 5.46882 5.52779 5.59423 5.77471 5.80390 5.98128 6.16571 6.40364 6.44061 6.70362 6.81960 6.87340 7.30011 7.40106 8.89884 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.001853 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.619175 B =15108.331432 C =15690.394241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.640 3.360 4 O -0.611 6.611 5 N -0.692 5.692 6 C 0.194 3.806 7 C -0.180 4.180 8 C -0.047 4.047 9 C -0.208 4.208 10 C 0.222 3.778 11 N -0.744 5.744 12 C 0.142 3.858 13 C 0.011 3.989 14 H 0.130 0.870 15 C 0.250 3.750 16 N -0.502 5.502 17 C 0.038 3.962 18 C -0.539 4.539 19 H 0.056 0.944 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.947 3.053 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.213 4.213 27 C -0.048 4.048 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.417 0.583 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.403 0.597 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.005 0.995 41 H 0.264 0.736 42 H 0.127 0.873 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.030 -3.934 -8.741 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.291 6.291 3 C 0.394 3.606 4 O -0.503 6.503 5 N -0.352 5.352 6 C 0.072 3.928 7 C -0.182 4.182 8 C -0.066 4.066 9 C -0.231 4.231 10 C 0.117 3.883 11 N -0.372 5.372 12 C 0.017 3.983 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.067 4.067 16 N -0.179 5.179 17 C -0.001 4.001 18 C -0.577 4.577 19 H 0.074 0.926 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.236 4.236 27 C -0.067 4.067 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.238 0.762 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.145 0.855 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.639 -2.106 -9.151 26.368 hybrid contribution 1.552 -0.600 0.113 1.668 sum -23.087 -2.706 -9.038 24.940 Atomic orbital electron populations 1.23480 0.72908 1.05533 1.02538 1.86265 1.25748 1.30308 1.86791 1.18416 0.83990 0.82115 0.76128 1.90977 1.65555 1.36101 1.57636 1.44928 1.02093 1.11434 1.76738 1.20009 0.87395 0.82388 1.02963 1.19406 0.93809 1.11369 0.93651 1.20944 0.93145 0.94654 0.97902 1.20756 0.95016 1.10863 0.96441 1.18107 0.83580 0.92093 0.94552 1.44843 1.04100 1.80085 1.08222 1.21345 0.87716 1.02853 0.86394 1.19386 0.93723 0.89476 0.98455 0.85202 1.29587 0.91472 0.94098 0.91523 1.81102 1.10959 1.13222 1.12604 1.18980 0.93693 0.97394 0.90019 1.21570 0.95610 1.47736 0.92814 0.92621 1.25684 1.02540 0.95400 0.95081 1.70027 1.36646 1.50339 0.99079 0.85665 0.80725 0.77920 0.78365 1.19368 1.21335 1.19936 1.20849 0.95098 1.10786 0.96840 1.20972 0.93220 0.94510 0.97986 0.92052 0.84792 0.92116 0.74634 0.90856 0.90657 0.84470 0.85199 0.76213 0.88432 0.92067 0.93951 0.97703 0.92715 0.85467 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.38 -6.47 10.62 -55.48 -0.59 -7.06 16 3 C 0.64 13.14 8.75 129.79 1.14 14.27 16 4 O -0.61 -16.44 16.13 19.81 0.32 -16.12 16 5 N -0.69 -10.94 5.55 -594.62 -3.30 -14.24 16 6 C 0.19 3.03 5.79 85.63 0.50 3.52 16 7 C -0.18 -2.87 5.25 -19.84 -0.10 -2.97 16 8 C -0.05 -0.75 9.69 22.25 0.22 -0.54 16 9 C -0.21 -3.81 9.90 22.40 0.22 -3.58 16 10 C 0.22 4.63 6.65 38.21 0.25 4.89 16 11 N -0.74 -16.14 5.52 -339.43 -1.87 -18.01 16 12 C 0.14 3.48 4.28 86.38 0.37 3.85 16 13 C 0.01 0.36 2.26 -12.60 -0.03 0.33 16 14 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 15 C 0.25 9.17 13.46 89.43 1.20 10.37 16 16 N -0.50 -20.66 18.54 20.02 0.37 -20.29 16 17 C 0.04 1.61 4.42 29.85 0.13 1.74 16 18 C -0.54 -27.03 8.60 25.60 0.22 -26.81 16 19 H 0.06 2.76 7.59 -2.91 -0.02 2.73 16 20 C 0.01 0.64 5.46 84.66 0.46 1.11 16 21 N -0.92 -51.06 13.29 21.45 0.28 -50.77 16 22 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.21 -4.28 9.31 22.40 0.21 -4.07 16 27 C -0.05 -0.82 9.69 22.25 0.22 -0.60 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 5.24 8.57 -92.71 -0.79 4.45 16 32 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.40 8.21 8.23 -92.71 -0.76 7.45 16 37 H 0.10 2.12 7.94 -2.39 -0.02 2.10 16 38 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 39 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 42 H 0.13 2.50 6.73 -2.91 -0.02 2.48 16 43 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -66.93 379.09 2.92 -64.01 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.51 Total: 15.15 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.20 Total: 3.25 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.52 Total: -103.32 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.27 Total: -23.18 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.93 2.92 -64.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497242193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds