Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00590 * 2 1 4 4 O 1.21512 * 119.99682 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99808 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47209 * 180.02562 * 6 5 3 8 8 C 1.38284 * 119.92910 * 89.99435 * 7 6 5 9 9 C 1.38102 * 120.07730 * 179.97438 * 8 7 6 10 10 C 1.38905 * 119.92398 * 0.28542 * 9 8 7 11 11 N 1.39669 * 120.07711 * 179.72013 * 10 9 8 12 12 C 1.46502 * 120.00681 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47514 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46772 * 55.00581 * 13 12 11 15 15 C 1.47189 * 109.47408 * 295.00331 * 13 12 11 16 16 N 9.09517 * 146.52324 * 2.25096 * 5 1 2 17 17 C 1.52997 * 109.46628 * 175.00097 * 13 12 11 18 18 C 1.50710 * 109.46609 * 185.00152 * 17 13 12 19 19 H 1.07993 * 120.00028 * 0.02562 * 18 17 13 20 20 C 1.37874 * 119.99988 * 179.97438 * 18 17 13 21 21 N 1.31513 * 120.00231 * 180.02562 * 20 18 17 22 22 Si 1.86810 * 120.00029 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47308 * 89.99384 * 22 20 18 24 24 H 1.48499 * 109.46936 * 209.99707 * 22 20 18 25 25 H 1.48498 * 109.46842 * 329.99441 * 22 20 18 26 26 C 1.38913 * 119.85112 * 359.48742 * 10 9 8 27 27 C 1.38104 * 119.92366 * 0.48549 * 26 10 9 28 28 H 1.08992 * 109.47537 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46460 * 300.00199 * 1 2 3 30 30 H 1.08998 * 109.46986 * 59.99391 * 1 2 3 31 31 H 0.96999 * 119.99888 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.47469 * 60.00191 * 6 5 3 33 33 H 1.09005 * 109.47420 * 299.99763 * 6 5 3 34 34 H 1.08008 * 119.95755 * 0.02755 * 8 7 6 35 35 H 1.08002 * 120.03497 * 180.02562 * 9 8 7 36 36 H 0.97008 * 120.00083 * 0.02562 * 11 10 9 37 37 H 1.08995 * 109.47221 * 300.00552 * 12 11 10 38 38 H 1.09006 * 109.46597 * 60.00077 * 12 11 10 39 39 H 1.08994 * 109.47337 * 304.99907 * 17 13 12 40 40 H 1.08996 * 109.47293 * 65.00397 * 17 13 12 41 41 H 0.97005 * 119.99982 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.03958 * 180.21259 * 26 10 9 43 43 H 1.08007 * 119.96398 * 179.74829 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2186 0.0005 5 7 3.4093 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 5.5684 2.3778 -0.0013 8 6 6.2514 2.2882 -1.2004 9 6 7.6206 2.1078 -1.2053 10 6 8.3109 2.0103 -0.0038 11 7 9.6948 1.8219 -0.0050 12 6 10.4215 1.7198 1.2630 13 6 11.9117 1.5170 0.9820 14 1 12.2724 2.3190 0.3379 15 6 12.1130 0.2217 0.3125 16 7 12.2683 -0.7796 -0.1967 17 6 12.6864 1.5351 2.3013 18 6 14.1644 1.4587 2.0169 19 1 14.5160 1.4032 0.9973 20 6 15.0678 1.4606 3.0585 21 7 16.3576 1.3945 2.8104 22 14 14.4597 1.5573 4.8222 23 1 14.2375 0.1853 5.3450 24 1 15.4744 2.2474 5.6584 25 1 13.1840 2.3160 4.8650 26 6 7.6224 2.1053 1.1989 27 6 6.2533 2.2864 1.1965 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9375 0.4564 -0.0013 32 1 3.7820 3.1317 0.8905 33 1 3.7812 3.1329 -0.8895 34 1 5.7135 2.3604 -2.1342 35 1 8.1534 2.0384 -2.1421 36 1 10.1751 1.7594 -0.8456 37 1 10.2809 2.6356 1.8371 38 1 10.0408 0.8719 1.8325 39 1 12.4670 2.4575 2.8388 40 1 12.3887 0.6808 2.9092 41 1 16.9932 1.3955 3.5432 42 1 8.1566 2.0334 2.1348 43 1 5.7168 2.3563 2.1313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497242194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = -36.310313 kcal Electronic energy + Delta-G solvation = -24351.075990 eV Core-core repulsion = 20589.041393 eV Total energy + Delta-G solvation = -3762.034597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71867 -39.74150 -37.70693 -36.95510 -35.74496 -34.71502 -33.67479 -32.10752 -31.06752 -30.27082 -28.13337 -27.26063 -25.25151 -24.05809 -22.41023 -21.74748 -21.61663 -20.99745 -19.15506 -17.71240 -17.23709 -17.05967 -16.93968 -16.84783 -16.04362 -15.63266 -14.89466 -14.80658 -14.41496 -14.30139 -14.16069 -13.86417 -13.75097 -13.52392 -13.33863 -13.18920 -12.71628 -12.62267 -12.53562 -12.40612 -12.16697 -11.66110 -11.60337 -11.48458 -11.14356 -11.09532 -10.97190 -10.95577 -10.50334 -10.17548 -10.12445 -9.95010 -9.51833 -9.47051 -9.06682 -8.71759 -7.52056 -6.20663 -4.22919 1.21244 1.31959 2.08294 2.52965 3.19771 3.26386 3.26611 3.29642 3.38148 3.47110 3.68798 4.10401 4.29001 4.47392 4.52899 4.67067 4.79296 4.86317 4.87806 4.98771 5.09666 5.12082 5.13657 5.26585 5.34438 5.38018 5.51830 5.63188 5.72486 5.88400 5.89514 5.95844 6.05217 6.06525 6.19185 6.23373 6.49127 6.69413 6.77900 6.93530 7.10424 7.21218 7.50417 7.60550 8.02367 8.17402 8.29625 8.81105 9.38205 10.92103 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.001958 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.871976 B =14297.912557 C =14669.879838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.643 3.357 4 O -0.576 6.576 5 N -0.704 5.704 6 C 0.190 3.810 7 C -0.187 4.187 8 C -0.047 4.047 9 C -0.202 4.202 10 C 0.237 3.763 11 N -0.742 5.742 12 C 0.126 3.874 13 C 0.007 3.993 14 H 0.114 0.886 15 C 0.234 3.766 16 N -0.456 5.456 17 C -0.002 4.002 18 C -0.533 4.533 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.262 1.262 26 C -0.202 4.202 27 C -0.046 4.046 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.409 0.591 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.126 0.874 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.493 2.293 -4.660 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.396 3.604 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.069 3.931 7 C -0.189 4.189 8 C -0.066 4.066 9 C -0.225 4.225 10 C 0.131 3.869 11 N -0.370 5.370 12 C 0.001 3.999 13 C -0.015 4.015 14 H 0.132 0.868 15 C -0.084 4.084 16 N -0.132 5.132 17 C -0.041 4.041 18 C -0.571 4.571 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.186 1.186 26 C -0.224 4.224 27 C -0.065 4.065 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.144 0.856 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -27.359 1.247 -5.147 27.867 hybrid contribution 0.324 0.010 0.846 0.906 sum -27.035 1.257 -4.301 27.404 Atomic orbital electron populations 1.23186 0.74415 1.03452 1.02718 1.86253 1.24219 1.31257 1.87102 1.18239 0.83593 0.82137 0.76458 1.91002 1.64728 1.34901 1.55915 1.44983 1.02642 1.10995 1.77687 1.20057 0.87680 0.82422 1.02972 1.19385 0.93831 1.12017 0.93716 1.20735 0.93391 0.95367 0.97128 1.20588 0.94556 1.10915 0.96424 1.17943 0.83837 0.91192 0.93909 1.44971 1.03986 1.79244 1.08758 1.21600 0.90040 1.02316 0.85918 1.19214 0.94166 0.88091 0.99980 0.86832 1.28869 0.92169 0.94668 0.92685 1.80989 1.09306 1.12040 1.10913 1.19620 0.96316 0.98254 0.89927 1.20969 0.88198 1.52410 0.95494 0.90782 1.24988 0.94724 0.94096 0.99216 1.69897 1.01184 1.49557 1.32508 0.86815 0.79126 0.78751 0.84840 1.20192 1.21142 1.18640 1.20700 0.94510 1.10444 0.96776 1.20794 0.93502 0.95044 0.97159 0.88001 0.91848 0.91877 0.75624 0.90662 0.90721 0.86185 0.86082 0.76372 0.89964 0.91441 0.94026 0.95845 0.92423 0.85561 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.45 10.61 -40.31 -0.43 -3.88 16 3 C 0.64 6.85 8.75 54.06 0.47 7.32 16 4 O -0.58 -7.78 16.13 -19.28 -0.31 -8.09 16 5 N -0.70 -6.01 5.55 -66.47 -0.37 -6.38 16 6 C 0.19 1.56 5.79 -5.19 -0.03 1.53 16 7 C -0.19 -1.59 5.25 -104.59 -0.55 -2.13 16 8 C -0.05 -0.40 9.69 -39.61 -0.38 -0.79 16 9 C -0.20 -1.95 9.90 -39.38 -0.39 -2.34 16 10 C 0.24 2.52 6.65 -83.79 -0.56 1.97 16 11 N -0.74 -8.15 5.52 -58.63 -0.32 -8.48 16 12 C 0.13 1.50 4.28 -4.04 -0.02 1.49 16 13 C 0.01 0.12 2.26 -93.41 -0.21 -0.10 16 14 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.23 4.29 13.45 -20.83 -0.28 4.01 16 16 N -0.46 -9.42 18.52 42.08 0.78 -8.64 16 17 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 18 C -0.53 -13.63 9.15 -34.44 -0.32 -13.94 16 19 H 0.07 2.09 7.84 -52.49 -0.41 1.68 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 22 Si 0.88 19.79 27.47 -169.99 -4.67 15.12 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 26 C -0.20 -2.03 9.31 -39.38 -0.37 -2.39 16 27 C -0.05 -0.41 9.69 -39.61 -0.38 -0.79 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 2.96 8.57 -40.82 -0.35 2.61 16 32 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.40 4.22 8.23 -40.82 -0.34 3.89 16 37 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 38 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 39 H 0.04 0.76 7.20 -51.93 -0.37 0.39 16 40 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.13 1.19 6.73 -52.49 -0.35 0.84 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -32.75 375.47 -7.04 -39.79 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.01 Total: 3.30 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.14 Total: -3.02 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.86 Total: -48.88 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.74 Total: -11.97 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.75 -7.04 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497242194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.481 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds