Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00590 * 2 1 4 4 O 1.21512 * 119.99682 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99808 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47209 * 180.02562 * 6 5 3 8 8 C 1.38284 * 119.92910 * 89.99435 * 7 6 5 9 9 C 1.38102 * 120.07730 * 179.97438 * 8 7 6 10 10 C 1.38905 * 119.92398 * 0.28542 * 9 8 7 11 11 N 1.39669 * 120.07711 * 179.72013 * 10 9 8 12 12 C 1.46502 * 120.00681 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47514 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46772 * 55.00581 * 13 12 11 15 15 C 1.47189 * 109.47408 * 295.00331 * 13 12 11 16 16 N 9.09517 * 146.52324 * 2.25096 * 5 1 2 17 17 C 1.52997 * 109.46628 * 175.00097 * 13 12 11 18 18 C 1.50710 * 109.46609 * 185.00152 * 17 13 12 19 19 H 1.07993 * 120.00028 * 0.02562 * 18 17 13 20 20 C 1.37874 * 119.99988 * 179.97438 * 18 17 13 21 21 N 1.31513 * 120.00231 * 180.02562 * 20 18 17 22 22 Si 1.86810 * 120.00029 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47308 * 89.99384 * 22 20 18 24 24 H 1.48499 * 109.46936 * 209.99707 * 22 20 18 25 25 H 1.48498 * 109.46842 * 329.99441 * 22 20 18 26 26 C 1.38913 * 119.85112 * 359.48742 * 10 9 8 27 27 C 1.38104 * 119.92366 * 0.48549 * 26 10 9 28 28 H 1.08992 * 109.47537 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46460 * 300.00199 * 1 2 3 30 30 H 1.08998 * 109.46986 * 59.99391 * 1 2 3 31 31 H 0.96999 * 119.99888 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.47469 * 60.00191 * 6 5 3 33 33 H 1.09005 * 109.47420 * 299.99763 * 6 5 3 34 34 H 1.08008 * 119.95755 * 0.02755 * 8 7 6 35 35 H 1.08002 * 120.03497 * 180.02562 * 9 8 7 36 36 H 0.97008 * 120.00083 * 0.02562 * 11 10 9 37 37 H 1.08995 * 109.47221 * 300.00552 * 12 11 10 38 38 H 1.09006 * 109.46597 * 60.00077 * 12 11 10 39 39 H 1.08994 * 109.47337 * 304.99907 * 17 13 12 40 40 H 1.08996 * 109.47293 * 65.00397 * 17 13 12 41 41 H 0.97005 * 119.99982 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.03958 * 180.21259 * 26 10 9 43 43 H 1.08007 * 119.96398 * 179.74829 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2186 0.0005 5 7 3.4093 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 5.5684 2.3778 -0.0013 8 6 6.2514 2.2882 -1.2004 9 6 7.6206 2.1078 -1.2053 10 6 8.3109 2.0103 -0.0038 11 7 9.6948 1.8219 -0.0050 12 6 10.4215 1.7198 1.2630 13 6 11.9117 1.5170 0.9820 14 1 12.2724 2.3190 0.3379 15 6 12.1130 0.2217 0.3125 16 7 12.2683 -0.7796 -0.1967 17 6 12.6864 1.5351 2.3013 18 6 14.1644 1.4587 2.0169 19 1 14.5160 1.4032 0.9973 20 6 15.0678 1.4606 3.0585 21 7 16.3576 1.3945 2.8104 22 14 14.4597 1.5573 4.8222 23 1 14.2375 0.1853 5.3450 24 1 15.4744 2.2474 5.6584 25 1 13.1840 2.3160 4.8650 26 6 7.6224 2.1053 1.1989 27 6 6.2533 2.2864 1.1965 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9375 0.4564 -0.0013 32 1 3.7820 3.1317 0.8905 33 1 3.7812 3.1329 -0.8895 34 1 5.7135 2.3604 -2.1342 35 1 8.1534 2.0384 -2.1421 36 1 10.1751 1.7594 -0.8456 37 1 10.2809 2.6356 1.8371 38 1 10.0408 0.8719 1.8325 39 1 12.4670 2.4575 2.8388 40 1 12.3887 0.6808 2.9092 41 1 16.9932 1.3955 3.5432 42 1 8.1566 2.0334 2.1348 43 1 5.7168 2.3563 2.1313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497242194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = -58.775644 kcal Electronic energy + Delta-G solvation = -24352.050160 eV Core-core repulsion = 20589.041393 eV Total energy + Delta-G solvation = -3763.008767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47073 -40.48262 -38.83762 -37.78247 -36.76319 -35.82418 -35.14289 -33.66583 -31.77735 -31.19804 -29.12831 -28.21672 -26.15948 -25.01219 -23.50579 -23.05792 -22.42120 -21.76293 -19.87119 -18.97975 -18.68232 -18.07247 -17.90204 -17.59284 -16.98326 -16.48170 -16.15348 -15.56903 -15.48712 -15.22727 -15.14126 -14.91298 -14.60193 -14.51435 -14.37108 -14.23692 -14.11678 -13.92182 -13.41356 -13.40950 -13.23000 -12.93866 -12.90391 -12.61461 -12.33258 -12.01075 -11.82371 -11.77988 -11.75172 -11.71002 -11.66571 -11.35964 -10.89249 -10.73937 -10.23503 -9.75267 -8.28515 -8.24992 -6.31249 0.51183 0.63139 1.42126 1.45124 1.45597 1.56417 1.73333 1.89835 1.93278 2.41137 2.51215 2.99284 3.09702 3.17020 3.47146 3.85138 3.89350 4.01542 4.21888 4.26322 4.36566 4.38131 4.40859 4.55784 4.59620 4.66778 4.74074 4.78734 4.82457 4.89984 4.97670 5.19088 5.21946 5.22965 5.40599 5.41008 5.47029 5.53116 5.62677 5.81237 5.99359 6.23102 6.39110 6.45138 6.69807 6.77795 6.82714 7.28477 7.33618 8.91569 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.001958 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.871976 B =14297.912557 C =14669.879838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.379 6.379 3 C 0.640 3.360 4 O -0.610 6.610 5 N -0.693 5.693 6 C 0.193 3.807 7 C -0.180 4.180 8 C -0.049 4.049 9 C -0.210 4.210 10 C 0.222 3.778 11 N -0.746 5.746 12 C 0.139 3.861 13 C 0.015 3.985 14 H 0.126 0.874 15 C 0.247 3.753 16 N -0.502 5.502 17 C -0.002 4.002 18 C -0.532 4.532 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.218 1.218 26 C -0.211 4.211 27 C -0.048 4.048 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.416 0.584 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.401 0.599 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.134 0.866 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.267 2.903 -3.433 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.292 6.292 3 C 0.393 3.607 4 O -0.502 6.502 5 N -0.353 5.353 6 C 0.072 3.928 7 C -0.183 4.183 8 C -0.068 4.068 9 C -0.233 4.233 10 C 0.118 3.882 11 N -0.375 5.375 12 C 0.014 3.986 13 C -0.006 4.006 14 H 0.143 0.857 15 C -0.070 4.070 16 N -0.179 5.179 17 C -0.041 4.041 18 C -0.570 4.570 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.140 1.140 26 C -0.233 4.233 27 C -0.067 4.067 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -30.172 1.847 -3.938 30.484 hybrid contribution 1.156 -0.207 0.343 1.223 sum -29.017 1.640 -3.595 29.284 Atomic orbital electron populations 1.23476 0.72896 1.05503 1.02578 1.86263 1.25771 1.30402 1.86795 1.18418 0.83999 0.82104 0.76144 1.90976 1.65535 1.36037 1.57603 1.44958 1.02098 1.11490 1.76760 1.20035 0.87451 0.82290 1.03034 1.19409 0.93769 1.11401 0.93710 1.20930 0.93172 0.94779 0.97901 1.20750 0.95029 1.10946 0.96557 1.18088 0.83568 0.92044 0.94546 1.44858 1.04253 1.79982 1.08361 1.21452 0.87040 1.03613 0.86541 1.19261 0.96606 0.86806 0.97966 0.85650 1.29514 0.90752 0.94873 0.91820 1.80992 1.10950 1.13643 1.12350 1.19578 0.92572 0.99706 0.92277 1.21386 0.91712 1.50504 0.93436 0.95191 1.26043 0.94676 0.94085 1.04623 1.70086 1.03029 1.52386 1.33927 0.85734 0.80168 0.79038 0.78192 1.20342 1.21867 1.14011 1.20865 0.95006 1.10594 0.96851 1.20989 0.93307 0.94460 0.97912 0.84879 0.92036 0.92040 0.74764 0.90641 0.90713 0.84742 0.85510 0.76363 0.87606 0.91139 0.91132 0.95219 0.92703 0.84853 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.56 113.37 1.20 1.74 16 2 O -0.38 -6.45 10.61 -55.43 -0.59 -7.04 16 3 C 0.64 12.88 8.75 129.79 1.14 14.02 16 4 O -0.61 -16.03 16.13 19.80 0.32 -15.71 16 5 N -0.69 -10.66 5.55 -594.61 -3.30 -13.96 16 6 C 0.19 2.82 5.79 85.63 0.50 3.31 16 7 C -0.18 -2.64 5.25 -19.84 -0.10 -2.75 16 8 C -0.05 -0.73 9.69 22.25 0.22 -0.52 16 9 C -0.21 -3.65 9.90 22.40 0.22 -3.43 16 10 C 0.22 4.22 6.65 38.21 0.25 4.48 16 11 N -0.75 -14.70 5.52 -339.42 -1.87 -16.57 16 12 C 0.14 2.85 4.28 86.38 0.37 3.22 16 13 C 0.02 0.45 2.26 -12.60 -0.03 0.42 16 14 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 15 C 0.25 8.94 13.45 89.46 1.20 10.14 16 16 N -0.50 -20.86 18.52 19.98 0.37 -20.49 16 17 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 18 C -0.53 -27.26 9.15 25.60 0.23 -27.03 16 19 H 0.03 1.74 7.84 -2.91 -0.02 1.72 16 20 C 0.00 0.14 5.47 84.65 0.46 0.60 16 21 N -0.95 -57.63 13.96 21.45 0.30 -57.33 16 22 Si 0.95 39.68 27.47 68.60 1.88 41.56 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.22 -7.56 6.54 99.48 0.65 -6.91 16 26 C -0.21 -3.64 9.31 22.40 0.21 -3.43 16 27 C -0.05 -0.72 9.69 22.25 0.22 -0.50 16 28 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.42 5.20 8.57 -92.71 -0.79 4.41 16 32 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 33 H 0.07 1.12 8.08 -2.38 -0.02 1.10 16 34 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.40 7.81 8.23 -92.70 -0.76 7.04 16 37 H 0.11 1.74 7.94 -2.39 -0.02 1.72 16 38 H 0.07 1.44 7.96 -2.38 -0.02 1.42 16 39 H 0.07 2.25 7.20 -2.39 -0.02 2.24 16 40 H 0.03 1.07 7.57 -2.39 -0.02 1.05 16 41 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 42 H 0.13 2.06 6.73 -2.91 -0.02 2.04 16 43 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -73.15 375.47 2.73 -70.42 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.57 Total: 18.83 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.19 Total: 0.29 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.51 Total: -108.36 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.27 Total: -22.75 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.88 Total: 41.56 kcal Total: -73.15 2.73 -70.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497242194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds