Wall clock time and date at job start Tue Mar 31 2020 11:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21272 * 120.00279 * 2 1 4 4 N 1.34781 * 119.99529 * 179.97438 * 2 1 3 5 5 C 1.39427 * 119.99850 * 185.26434 * 4 2 1 6 6 C 1.38963 * 119.63105 * 185.43189 * 5 4 2 7 7 C 1.39654 * 118.92567 * 180.29461 * 6 5 4 8 8 C 1.48012 * 120.89617 * 179.71230 * 7 6 5 9 9 O 1.21555 * 119.99638 * 61.12868 * 8 7 6 10 10 N 1.34773 * 119.99633 * 241.13346 * 8 7 6 11 11 C 1.36800 * 119.99640 * 186.07260 * 10 8 7 12 12 H 1.07997 * 120.00350 * 229.40014 * 11 10 8 13 13 C 1.39111 * 119.99922 * 49.39979 * 11 10 8 14 14 N 1.31329 * 119.99769 * 13.83539 * 13 11 10 15 15 Si 1.86797 * 120.00040 * 193.83205 * 13 11 10 16 16 H 1.48502 * 109.47100 * 90.00370 * 15 13 11 17 17 H 1.48497 * 109.46964 * 209.99848 * 15 13 11 18 18 H 1.48499 * 109.47196 * 330.00228 * 15 13 11 19 19 C 1.46497 * 120.00650 * 6.07214 * 10 8 7 20 20 C 1.54966 * 110.92482 * 132.78991 * 19 10 8 21 21 C 1.54265 * 104.15860 * 156.29740 * 20 19 10 22 22 C 1.53872 * 106.64189 * 336.44481 * 21 20 19 23 23 C 1.54271 * 106.59904 * 359.97438 * 22 21 20 24 24 C 1.40071 * 118.20921 * 359.44332 * 7 6 5 25 25 C 1.37960 * 119.14738 * 0.27327 * 24 7 6 26 26 N 1.31901 * 120.99717 * 0.02562 * 25 24 7 27 27 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47134 * 300.00293 * 1 2 3 29 29 H 1.09002 * 109.46614 * 59.99893 * 1 2 3 30 30 H 0.97002 * 119.99937 * 5.27547 * 4 2 1 31 31 H 1.07998 * 120.53993 * 0.02562 * 6 5 4 32 32 H 0.97002 * 119.99919 * 184.98055 * 14 13 11 33 33 H 1.08999 * 110.67208 * 9.48770 * 19 10 8 34 34 H 1.08998 * 110.47385 * 37.64789 * 20 19 10 35 35 H 1.08997 * 110.53008 * 274.97816 * 20 19 10 36 36 H 1.09000 * 110.03449 * 217.14079 * 21 20 19 37 37 H 1.08996 * 110.03239 * 95.75729 * 21 20 19 38 38 H 1.09001 * 110.03500 * 119.25968 * 22 21 20 39 39 H 1.09000 * 110.03540 * 240.64276 * 22 21 20 40 40 H 1.09008 * 110.48604 * 142.28539 * 23 22 21 41 41 H 1.08994 * 110.48458 * 264.79864 * 23 22 21 42 42 H 1.08002 * 120.42560 * 180.29402 * 24 7 6 43 43 H 1.07991 * 119.49704 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5707 -1.1699 0.1113 6 6 4.2668 -2.3672 -0.0026 7 6 5.6582 -2.3536 0.1170 8 6 6.4425 -3.6042 0.0093 9 8 6.4124 -4.2539 -1.0176 10 7 7.1897 -4.0226 1.0500 11 6 8.0103 -5.1082 0.9100 12 1 7.9848 -5.9024 1.6414 13 6 8.8778 -5.1891 -0.1745 14 7 9.1123 -4.1256 -0.9085 15 14 9.7092 -6.8103 -0.5867 16 1 8.8564 -7.5783 -1.5291 17 1 11.0275 -6.5445 -1.2164 18 1 9.9045 -7.5968 0.6577 19 6 7.1233 -3.3150 2.3310 20 6 6.9631 -4.3122 3.5064 21 6 7.5097 -3.5458 4.7285 22 6 8.4695 -2.4738 4.1832 23 6 8.4737 -2.6259 2.6480 24 6 6.2919 -1.1238 0.3358 25 6 5.5257 0.0195 0.4304 26 7 4.2125 -0.0316 0.3184 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6988 -2.0056 -0.0763 31 1 3.7400 -3.2938 -0.1764 32 1 9.6594 -4.1979 -1.7063 33 1 6.3104 -2.5889 2.3278 34 1 7.5513 -5.2119 3.3259 35 1 5.9129 -4.5647 3.6529 36 1 8.0474 -4.2280 5.3871 37 1 6.6904 -3.0729 5.2698 38 1 8.1154 -1.4805 4.4591 39 1 9.4727 -2.6352 4.5779 40 1 8.5252 -1.6486 2.1680 41 1 9.3076 -3.2511 2.3290 42 1 7.3667 -1.0713 0.4290 43 1 6.0085 0.9708 0.5986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528620135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:36 Heat of formation + Delta-G solvation = -19.130259 kcal Electronic energy + Delta-G solvation = -27115.293045 eV Core-core repulsion = 23354.003431 eV Total energy + Delta-G solvation = -3761.289614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.59478 -39.25922 -38.23337 -36.73383 -34.78571 -33.57140 -32.28192 -31.23919 -30.86434 -28.84501 -28.09717 -26.88525 -25.62402 -23.59195 -22.95107 -21.11823 -20.00562 -19.79138 -19.38918 -18.05343 -16.97322 -16.33359 -16.07466 -15.57414 -15.52842 -15.12771 -15.01194 -14.68495 -14.22101 -14.10808 -13.67633 -13.57973 -13.35666 -12.94723 -12.81263 -12.71903 -12.50498 -12.27425 -11.70724 -11.65808 -11.21123 -10.96769 -10.90041 -10.76512 -10.63770 -10.52132 -10.48203 -10.24935 -10.15132 -9.89446 -9.82383 -9.28379 -9.01837 -8.76235 -8.26113 -8.04048 -7.21617 -6.21270 -4.02291 1.38637 1.53329 2.69722 2.91330 3.26448 3.33086 3.35630 3.96547 4.23152 4.30323 4.45406 4.68529 4.86876 5.04804 5.08178 5.19695 5.20649 5.22920 5.34416 5.36276 5.47088 5.56932 5.62485 5.69538 5.87753 5.97519 6.02774 6.10432 6.15855 6.19287 6.24831 6.38609 6.40246 6.43934 6.56139 6.71572 6.86568 6.87480 6.99969 7.13487 7.25317 7.56569 8.07423 8.20116 8.44152 8.95284 9.02563 9.49520 10.11909 10.86117 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.004263 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.597958 B = 6567.236534 C = 7546.024518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.499 3.501 3 O -0.483 6.483 4 N -0.662 5.662 5 C 0.347 3.653 6 C -0.178 4.178 7 C -0.017 4.017 8 C 0.522 3.478 9 O -0.533 6.533 10 N -0.432 5.432 11 C -0.336 4.336 12 H 0.081 0.919 13 C 0.072 3.928 14 N -0.839 5.839 15 Si 0.909 3.091 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.128 3.872 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.170 4.170 25 C 0.121 3.879 26 N -0.482 5.482 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.416 0.584 31 H 0.135 0.865 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 4.686 7.119 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.286 3.714 3 O -0.353 6.353 4 N -0.310 5.310 5 C 0.116 3.884 6 C -0.202 4.202 7 C -0.029 4.029 8 C 0.308 3.692 9 O -0.411 6.411 10 N -0.152 5.152 11 C -0.463 4.463 12 H 0.099 0.901 13 C -0.138 4.138 14 N -0.472 5.472 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.196 1.196 19 C 0.023 3.977 20 C -0.168 4.168 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.192 4.192 25 C -0.036 4.036 26 N -0.197 5.197 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.252 0.748 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.158 0.842 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.692 6.003 6.539 13.896 hybrid contribution 0.735 -1.876 -0.453 2.065 sum -9.957 4.127 6.085 12.377 Atomic orbital electron populations 1.21860 0.91183 1.04329 1.05421 1.21010 0.90487 0.83491 0.76453 1.90823 1.69979 1.30456 1.44067 1.43706 1.04295 1.10551 1.72441 1.18241 0.84328 0.89834 0.95978 1.21433 0.94012 0.97638 1.07106 1.20761 0.93233 0.96228 0.92681 1.17885 0.80617 0.84456 0.86212 1.90634 1.65156 1.56025 1.29331 1.43019 1.36729 1.27407 1.08044 1.18889 1.16494 0.98244 1.12670 0.90111 1.25361 0.94520 0.96902 0.97059 1.69767 1.34997 1.28040 1.14425 0.86246 0.78258 0.83010 0.78876 1.20259 1.21208 1.19631 1.22116 0.96519 0.93122 0.85902 1.22615 1.00278 0.99899 0.93987 1.22047 0.98427 0.97636 0.97656 1.22082 0.99004 0.98133 0.96816 1.22610 0.99742 1.00349 0.93509 1.22330 1.02061 0.92294 1.02526 1.22487 0.88051 0.98176 0.94866 1.67388 1.10569 1.26537 1.15191 0.90488 0.88534 0.88630 0.74758 0.84695 0.92299 0.91219 0.89887 0.92745 0.92380 0.92718 0.92694 0.92415 0.92661 0.89723 0.84161 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.39 36.01 0.37 -0.82 16 2 C 0.50 6.42 7.89 -10.98 -0.09 6.33 16 3 O -0.48 -8.60 15.39 5.56 0.09 -8.51 16 4 N -0.66 -8.33 5.39 -11.45 -0.06 -8.39 16 5 C 0.35 5.80 7.41 -154.75 -1.15 4.65 16 6 C -0.18 -3.16 9.72 -38.78 -0.38 -3.54 16 7 C -0.02 -0.35 4.27 -104.67 -0.45 -0.80 16 8 C 0.52 12.95 6.30 -12.25 -0.08 12.87 16 9 O -0.53 -15.49 15.56 5.32 0.08 -15.41 16 10 N -0.43 -10.22 2.51 -106.59 -0.27 -10.49 16 11 C -0.34 -8.65 7.67 -15.01 -0.12 -8.76 16 12 H 0.08 2.01 6.46 -52.49 -0.34 1.67 16 13 C 0.07 1.92 4.57 -17.44 -0.08 1.84 16 14 N -0.84 -23.63 12.11 55.50 0.67 -22.96 16 15 Si 0.91 20.99 29.58 -169.99 -5.03 15.96 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 C 0.13 2.47 2.69 -65.90 -0.18 2.29 16 20 C -0.13 -2.20 6.30 -25.03 -0.16 -2.36 16 21 C -0.12 -1.69 6.80 -25.62 -0.17 -1.86 16 22 C -0.12 -1.78 6.80 -25.61 -0.17 -1.95 16 23 C -0.12 -2.23 6.42 -25.07 -0.16 -2.40 16 24 C -0.17 -3.16 8.48 -39.00 -0.33 -3.49 16 25 C 0.12 2.05 11.16 -17.62 -0.20 1.85 16 26 N -0.48 -8.82 7.89 -12.43 -0.10 -8.92 16 27 H 0.08 0.33 7.92 -51.93 -0.41 -0.08 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.42 3.52 8.54 -40.82 -0.35 3.17 16 31 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.30 5.86 -51.93 -0.30 0.99 16 34 H 0.08 1.54 6.17 -51.93 -0.32 1.22 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.97 7.27 -51.92 -0.38 0.60 16 41 H 0.08 1.78 7.53 -51.93 -0.39 1.38 16 42 H 0.14 2.63 7.18 -52.49 -0.38 2.26 16 43 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -35.26 355.00 -8.40 -43.66 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.81 Total: 5.83 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.33 Total: 3.87 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.24 Total: -50.75 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.26 -8.40 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528620135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.532 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds