Wall clock time and date at job start Tue Mar 31 2020 11:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21272 * 120.00279 * 2 1 4 4 N 1.34781 * 119.99529 * 179.97438 * 2 1 3 5 5 C 1.39427 * 119.99850 * 185.26434 * 4 2 1 6 6 C 1.38963 * 119.63105 * 185.43189 * 5 4 2 7 7 C 1.39654 * 118.92567 * 180.29461 * 6 5 4 8 8 C 1.48012 * 120.89617 * 179.71230 * 7 6 5 9 9 O 1.21555 * 119.99638 * 61.12868 * 8 7 6 10 10 N 1.34773 * 119.99633 * 241.13346 * 8 7 6 11 11 C 1.36800 * 119.99640 * 186.07260 * 10 8 7 12 12 H 1.07997 * 120.00350 * 229.40014 * 11 10 8 13 13 C 1.39111 * 119.99922 * 49.39979 * 11 10 8 14 14 N 1.31329 * 119.99769 * 13.83539 * 13 11 10 15 15 Si 1.86797 * 120.00040 * 193.83205 * 13 11 10 16 16 H 1.48502 * 109.47100 * 90.00370 * 15 13 11 17 17 H 1.48497 * 109.46964 * 209.99848 * 15 13 11 18 18 H 1.48499 * 109.47196 * 330.00228 * 15 13 11 19 19 C 1.46497 * 120.00650 * 6.07214 * 10 8 7 20 20 C 1.54966 * 110.92482 * 132.78991 * 19 10 8 21 21 C 1.54265 * 104.15860 * 156.29740 * 20 19 10 22 22 C 1.53872 * 106.64189 * 336.44481 * 21 20 19 23 23 C 1.54271 * 106.59904 * 359.97438 * 22 21 20 24 24 C 1.40071 * 118.20921 * 359.44332 * 7 6 5 25 25 C 1.37960 * 119.14738 * 0.27327 * 24 7 6 26 26 N 1.31901 * 120.99717 * 0.02562 * 25 24 7 27 27 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47134 * 300.00293 * 1 2 3 29 29 H 1.09002 * 109.46614 * 59.99893 * 1 2 3 30 30 H 0.97002 * 119.99937 * 5.27547 * 4 2 1 31 31 H 1.07998 * 120.53993 * 0.02562 * 6 5 4 32 32 H 0.97002 * 119.99919 * 184.98055 * 14 13 11 33 33 H 1.08999 * 110.67208 * 9.48770 * 19 10 8 34 34 H 1.08998 * 110.47385 * 37.64789 * 20 19 10 35 35 H 1.08997 * 110.53008 * 274.97816 * 20 19 10 36 36 H 1.09000 * 110.03449 * 217.14079 * 21 20 19 37 37 H 1.08996 * 110.03239 * 95.75729 * 21 20 19 38 38 H 1.09001 * 110.03500 * 119.25968 * 22 21 20 39 39 H 1.09000 * 110.03540 * 240.64276 * 22 21 20 40 40 H 1.09008 * 110.48604 * 142.28539 * 23 22 21 41 41 H 1.08994 * 110.48458 * 264.79864 * 23 22 21 42 42 H 1.08002 * 120.42560 * 180.29402 * 24 7 6 43 43 H 1.07991 * 119.49704 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5707 -1.1699 0.1113 6 6 4.2668 -2.3672 -0.0026 7 6 5.6582 -2.3536 0.1170 8 6 6.4425 -3.6042 0.0093 9 8 6.4124 -4.2539 -1.0176 10 7 7.1897 -4.0226 1.0500 11 6 8.0103 -5.1082 0.9100 12 1 7.9848 -5.9024 1.6414 13 6 8.8778 -5.1891 -0.1745 14 7 9.1123 -4.1256 -0.9085 15 14 9.7092 -6.8103 -0.5867 16 1 8.8564 -7.5783 -1.5291 17 1 11.0275 -6.5445 -1.2164 18 1 9.9045 -7.5968 0.6577 19 6 7.1233 -3.3150 2.3310 20 6 6.9631 -4.3122 3.5064 21 6 7.5097 -3.5458 4.7285 22 6 8.4695 -2.4738 4.1832 23 6 8.4737 -2.6259 2.6480 24 6 6.2919 -1.1238 0.3358 25 6 5.5257 0.0195 0.4304 26 7 4.2125 -0.0316 0.3184 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6988 -2.0056 -0.0763 31 1 3.7400 -3.2938 -0.1764 32 1 9.6594 -4.1979 -1.7063 33 1 6.3104 -2.5889 2.3278 34 1 7.5513 -5.2119 3.3259 35 1 5.9129 -4.5647 3.6529 36 1 8.0474 -4.2280 5.3871 37 1 6.6904 -3.0729 5.2698 38 1 8.1154 -1.4805 4.4591 39 1 9.4727 -2.6352 4.5779 40 1 8.5252 -1.6486 2.1680 41 1 9.3076 -3.2511 2.3290 42 1 7.3667 -1.0713 0.4290 43 1 6.0085 0.9708 0.5986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528620135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:36 Heat of formation + Delta-G solvation = -42.123369 kcal Electronic energy + Delta-G solvation = -27116.290101 eV Core-core repulsion = 23354.003431 eV Total energy + Delta-G solvation = -3762.286670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91826 -40.72846 -39.63893 -38.35933 -35.99054 -35.41429 -33.95771 -32.98650 -31.92211 -29.84796 -29.43802 -28.39859 -27.42954 -25.17019 -24.28649 -22.51295 -21.52032 -21.09804 -20.84397 -19.49583 -18.12804 -18.02899 -17.56530 -17.02511 -16.94327 -16.63012 -16.36052 -16.16463 -15.85107 -15.51104 -14.94607 -14.81758 -14.79770 -14.62499 -14.20516 -14.09107 -13.43964 -13.38077 -13.15610 -13.04517 -12.92488 -12.74375 -12.72627 -12.19489 -12.00520 -11.97204 -11.86871 -11.79560 -11.41329 -11.33950 -11.10028 -10.85297 -10.78086 -10.46571 -10.01781 -9.33640 -9.14433 -8.23488 -6.07457 0.03127 0.03813 1.38116 1.44773 1.50364 1.65152 1.86262 2.16905 2.39509 2.84216 2.94410 3.21372 3.41173 3.76009 3.88054 3.91320 3.96044 3.97798 4.08183 4.19911 4.30298 4.50448 4.53060 4.59777 4.69561 4.70069 4.73973 4.79463 4.82480 4.94816 5.05639 5.07684 5.18613 5.19997 5.27076 5.27872 5.41898 5.54343 5.58497 5.63305 5.68668 6.20656 6.24032 6.91266 6.99047 7.09517 7.29910 7.56740 8.19899 8.83316 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.004263 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.597958 B = 6567.236534 C = 7546.024518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.495 3.505 3 O -0.537 6.537 4 N -0.650 5.650 5 C 0.352 3.648 6 C -0.177 4.177 7 C -0.038 4.038 8 C 0.512 3.488 9 O -0.590 6.590 10 N -0.438 5.438 11 C -0.343 4.343 12 H 0.085 0.915 13 C 0.023 3.977 14 N -0.875 5.875 15 Si 0.966 3.034 16 H -0.289 1.289 17 H -0.283 1.283 18 H -0.251 1.251 19 C 0.123 3.877 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.175 4.175 25 C 0.132 3.868 26 N -0.499 5.499 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.435 0.565 31 H 0.148 0.852 32 H 0.260 0.740 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.131 0.869 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 5.216 9.192 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.284 3.716 3 O -0.410 6.410 4 N -0.300 5.300 5 C 0.121 3.879 6 C -0.201 4.201 7 C -0.050 4.050 8 C 0.301 3.699 9 O -0.473 6.473 10 N -0.157 5.157 11 C -0.470 4.470 12 H 0.103 0.897 13 C -0.183 4.183 14 N -0.510 5.510 15 Si 0.790 3.210 16 H -0.216 1.216 17 H -0.209 1.209 18 H -0.174 1.174 19 C 0.019 3.981 20 C -0.166 4.166 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.197 4.197 25 C -0.024 4.024 26 N -0.215 5.215 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.276 0.724 31 H 0.166 0.834 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.149 0.851 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.709 6.502 8.675 16.705 hybrid contribution 1.236 -1.996 -1.073 2.581 sum -11.473 4.507 7.602 14.482 Atomic orbital electron populations 1.21902 0.86090 1.06994 1.06483 1.22148 0.92679 0.82349 0.74419 1.90801 1.71520 1.32255 1.46462 1.43835 1.02595 1.12061 1.71470 1.18438 0.86146 0.88895 0.94454 1.21498 0.93012 0.98789 1.06756 1.20470 0.94223 0.94942 0.95325 1.18492 0.80552 0.85363 0.85508 1.90574 1.67223 1.58180 1.31347 1.43244 1.35816 1.27227 1.09399 1.19158 1.16156 0.99192 1.12537 0.89725 1.26146 0.95374 0.99597 0.97168 1.69882 1.36469 1.29785 1.14885 0.85372 0.77002 0.79585 0.78996 1.21616 1.20911 1.17406 1.22342 0.97451 0.93840 0.84501 1.22590 1.00788 0.98829 0.94381 1.22028 0.99059 0.97402 0.96410 1.22053 1.00099 0.99592 0.93457 1.22512 0.97568 0.99217 0.96620 1.22224 1.01682 0.92299 1.03470 1.22887 0.87700 0.98624 0.93196 1.67547 1.11027 1.27161 1.15722 0.87098 0.87292 0.87474 0.72397 0.83416 0.93021 0.90421 0.91968 0.91781 0.90851 0.90382 0.90539 0.91321 0.92898 0.93328 0.85111 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.39 71.24 0.74 -0.87 16 2 C 0.49 11.55 7.89 87.66 0.69 12.24 16 3 O -0.54 -18.40 15.39 -3.00 -0.05 -18.45 16 4 N -0.65 -14.87 5.39 -308.52 -1.66 -16.53 16 5 C 0.35 11.34 7.41 132.91 0.98 12.33 16 6 C -0.18 -6.22 9.72 22.79 0.22 -6.00 16 7 C -0.04 -1.59 4.27 -19.90 -0.08 -1.67 16 8 C 0.51 26.45 6.30 86.84 0.55 26.99 16 9 O -0.59 -36.01 15.56 -3.89 -0.06 -36.07 16 10 N -0.44 -21.41 2.51 -609.40 -1.53 -22.94 16 11 C -0.34 -18.22 7.67 84.13 0.65 -17.58 16 12 H 0.09 4.32 6.46 -2.91 -0.02 4.30 16 13 C 0.02 1.28 4.57 84.98 0.39 1.67 16 14 N -0.88 -51.68 12.11 21.69 0.26 -51.42 16 15 Si 0.97 44.33 29.58 68.60 2.03 46.36 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 19 C 0.12 4.72 2.69 46.31 0.12 4.85 16 20 C -0.13 -4.20 6.30 31.70 0.20 -4.00 16 21 C -0.11 -2.81 6.80 31.32 0.21 -2.59 16 22 C -0.11 -3.05 6.80 31.32 0.21 -2.83 16 23 C -0.12 -4.38 6.42 31.67 0.20 -4.18 16 24 C -0.17 -6.57 8.48 22.65 0.19 -6.37 16 25 C 0.13 4.37 11.16 84.62 0.94 5.31 16 26 N -0.50 -17.69 7.89 -193.23 -1.53 -19.21 16 27 H 0.11 0.41 7.92 -2.39 -0.02 0.39 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.44 6.10 8.54 -92.71 -0.79 5.31 16 31 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.08 2.87 5.86 -2.39 -0.01 2.85 16 34 H 0.06 2.30 6.17 -2.39 -0.01 2.28 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.89 7.27 -2.38 -0.02 1.88 16 41 H 0.05 2.11 7.53 -2.39 -0.02 2.09 16 42 H 0.13 5.10 7.18 -2.91 -0.02 5.08 16 43 H 0.19 4.85 8.06 -2.92 -0.02 4.82 16 Total: -1.00 -81.45 355.00 3.94 -77.50 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.25 Total: 23.46 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.22 Total: 17.30 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.46 Total: -110.10 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.11 Total: -54.52 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -81.45 3.94 -77.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528620135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.381 kcal (2) G-P(sol) polarization free energy of solvation -81.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds