Wall clock time and date at job start Tue Mar 31 2020 11:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21273 * 120.00655 * 2 1 4 4 N 1.34778 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.39426 * 120.00606 * 185.25597 * 4 2 1 6 6 C 1.39007 * 119.63950 * 185.40771 * 5 4 2 7 7 C 1.39548 * 118.93875 * 180.02562 * 6 5 4 8 8 C 1.48166 * 120.89203 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99500 * 322.50427 * 8 7 6 10 10 N 1.34775 * 120.00014 * 142.49894 * 8 7 6 11 11 C 1.46917 * 120.63398 * 353.69722 * 10 8 7 12 12 C 1.52756 * 109.00992 * 233.58323 * 11 10 8 13 13 C 1.53038 * 109.38481 * 305.58902 * 12 11 10 14 14 C 1.50702 * 109.45279 * 181.25414 * 13 12 11 15 15 H 1.07998 * 119.99685 * 245.71981 * 14 13 12 16 16 C 1.37879 * 119.99715 * 65.71400 * 14 13 12 17 17 N 1.31520 * 120.00289 * 5.36307 * 16 14 13 18 18 Si 1.86800 * 119.99844 * 185.35299 * 16 14 13 19 19 H 1.48509 * 109.46878 * 95.00162 * 18 16 14 20 20 H 1.48498 * 109.47489 * 215.00044 * 18 16 14 21 21 H 1.48497 * 109.47057 * 335.00547 * 18 16 14 22 22 C 1.53033 * 109.53905 * 61.23628 * 13 12 11 23 23 C 1.46932 * 120.62633 * 173.97636 * 10 8 7 24 24 C 1.39981 * 118.22367 * 0.02562 * 7 6 5 25 25 C 1.38003 * 119.15863 * 0.02562 * 24 7 6 26 26 N 1.31882 * 120.98851 * 0.02562 * 25 24 7 27 27 H 1.09000 * 109.47458 * 270.00462 * 1 2 3 28 28 H 1.09000 * 109.47095 * 29.99659 * 1 2 3 29 29 H 1.08994 * 109.47663 * 149.99641 * 1 2 3 30 30 H 0.97006 * 120.00160 * 5.26167 * 4 2 1 31 31 H 1.08001 * 120.53310 * 0.27887 * 6 5 4 32 32 H 1.09003 * 109.58942 * 353.41941 * 11 10 8 33 33 H 1.09000 * 109.58905 * 113.83862 * 11 10 8 34 34 H 1.09003 * 109.56531 * 185.55436 * 12 11 10 35 35 H 1.08998 * 109.36205 * 65.49851 * 12 11 10 36 36 H 1.09003 * 109.45765 * 301.21947 * 13 12 11 37 37 H 0.97002 * 120.00056 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.49981 * 178.68298 * 22 13 12 39 39 H 1.08999 * 109.49860 * 58.59204 * 22 13 12 40 40 H 1.08999 * 109.58374 * 246.15705 * 23 10 8 41 41 H 1.08999 * 109.58797 * 6.44272 * 23 10 8 42 42 H 1.08002 * 120.42222 * 180.02562 * 24 7 6 43 43 H 1.07991 * 119.50385 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5707 -1.1699 0.1111 6 6 4.2670 -2.3676 -0.0023 7 6 5.6578 -2.3535 0.1113 8 6 6.4431 -3.6048 -0.0020 9 8 6.0093 -4.6387 0.4665 10 7 7.6383 -3.5963 -0.6247 11 6 8.1140 -2.3900 -1.3154 12 6 8.4860 -2.7531 -2.7518 13 6 9.4899 -3.9082 -2.7400 14 6 9.8814 -4.2473 -4.1552 15 1 9.6116 -5.2049 -4.5753 16 6 10.5841 -3.3350 -4.9135 17 7 11.0042 -2.2132 -4.3704 18 14 10.9395 -3.6923 -6.7122 19 1 9.8965 -3.0584 -7.5582 20 1 12.2709 -3.1421 -7.0725 21 1 10.9335 -5.1603 -6.9358 22 6 8.8531 -5.1331 -2.0797 23 6 8.4877 -4.7952 -0.6309 24 6 6.2912 -1.1256 0.3363 25 6 5.5249 0.0177 0.4374 26 7 4.2117 -0.0329 0.3259 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6988 -2.0056 -0.0761 31 1 3.7405 -3.2938 -0.1796 32 1 7.3250 -1.6379 -1.3227 33 1 8.9914 -1.9968 -0.8019 34 1 8.9321 -1.8884 -3.2430 35 1 7.5890 -3.0563 -3.2917 36 1 10.3765 -3.6129 -2.1787 37 1 11.4988 -1.5716 -4.9038 38 1 9.5603 -5.9623 -2.0926 39 1 7.9526 -5.4139 -2.6259 40 1 9.3962 -4.6022 -0.0604 41 1 7.9460 -5.6291 -0.1844 42 1 7.3659 -1.0735 0.4295 43 1 6.0077 0.9679 0.6113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529000806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:27 Heat of formation + Delta-G solvation = -20.744281 kcal Electronic energy + Delta-G solvation = -26266.480679 eV Core-core repulsion = 22505.121076 eV Total energy + Delta-G solvation = -3761.359603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12227 -39.95017 -38.74746 -36.92920 -35.17905 -33.68296 -32.77543 -31.32856 -31.00037 -30.22139 -29.12878 -26.59097 -24.84621 -23.61245 -22.91645 -22.35311 -21.24852 -19.98539 -18.97979 -18.08457 -17.23248 -16.77264 -16.26286 -16.11178 -15.79076 -15.52171 -15.39182 -14.71922 -14.56154 -14.41521 -13.98722 -13.93127 -13.41733 -13.16705 -12.99561 -12.87231 -12.75871 -12.55182 -12.44161 -12.15275 -11.67225 -11.41133 -10.98174 -10.90216 -10.69421 -10.50508 -10.46186 -10.25170 -9.99696 -9.85783 -9.63795 -9.24159 -9.17327 -9.02008 -8.44823 -8.39023 -8.15922 -6.09279 -4.12509 0.80486 0.92168 2.39248 2.55161 2.93675 3.24736 3.25858 3.33697 3.36628 3.80289 4.13869 4.38190 4.45017 4.59198 4.79344 4.80828 4.91799 5.00746 5.02562 5.22323 5.42415 5.46121 5.50282 5.55640 5.72505 5.84293 5.92444 5.95792 6.02431 6.05704 6.19708 6.34646 6.51772 6.53803 6.78507 6.90425 6.94469 7.01129 7.13345 7.58411 7.71977 7.74470 7.82693 7.91672 8.05589 8.29255 8.34458 8.91379 9.52334 10.99014 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.003068 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.319145 B = 9125.292932 C = 9868.993725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.479 6.479 4 N -0.663 5.663 5 C 0.353 3.647 6 C -0.155 4.155 7 C -0.047 4.047 8 C 0.554 3.446 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.091 3.909 12 C -0.119 4.119 13 C 0.047 3.953 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.123 4.123 23 C 0.111 3.889 24 C -0.171 4.171 25 C 0.128 3.872 26 N -0.468 5.468 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.418 0.582 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 2.741 10.167 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.287 3.713 3 O -0.348 6.348 4 N -0.311 5.311 5 C 0.122 3.878 6 C -0.180 4.180 7 C -0.058 4.058 8 C 0.341 3.659 9 O -0.425 6.425 10 N -0.318 5.318 11 C -0.031 4.031 12 C -0.158 4.158 13 C 0.029 3.971 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.162 4.162 23 C -0.011 4.011 24 C -0.193 4.193 25 C -0.029 4.029 26 N -0.183 5.183 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.255 0.745 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.166 0.834 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.294 3.935 10.433 19.745 hybrid contribution 0.534 -1.306 -1.272 1.899 sum -15.761 2.629 9.162 18.419 Atomic orbital electron populations 1.21899 0.90739 1.05248 1.05072 1.21077 0.90667 0.83301 0.76266 1.90840 1.70025 1.30400 1.43533 1.43726 1.03954 1.10929 1.72480 1.18283 0.84784 0.89539 0.95228 1.21450 0.93530 0.98081 1.04889 1.20117 0.93435 0.94210 0.98029 1.18169 0.81185 0.87482 0.79035 1.90736 1.69695 1.32426 1.49682 1.48132 1.17489 1.15038 1.51163 1.22357 0.99047 0.85680 0.95967 1.21895 0.99364 1.03073 0.91456 1.18654 0.93343 0.89344 0.95783 1.21167 1.34980 1.01477 0.97603 0.92696 1.24958 0.95284 0.95329 0.98273 1.69913 1.37646 1.09418 1.35879 0.86636 0.77615 0.78523 0.85587 1.20755 1.21243 1.19917 1.22014 1.00438 1.00817 0.92886 1.21798 0.93253 0.86675 0.99332 1.22478 1.02302 0.92235 1.02250 1.22635 0.87881 0.98461 0.93915 1.67454 1.10660 1.26613 1.13573 0.88523 0.88480 0.89970 0.74485 0.83880 0.90374 0.91353 0.89064 0.94078 0.94732 0.92956 0.91809 0.92945 0.91682 0.90108 0.83382 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.31 36.00 0.37 -0.50 16 2 C 0.50 5.21 7.89 -10.99 -0.09 5.12 16 3 O -0.48 -7.36 15.40 5.56 0.09 -7.28 16 4 N -0.66 -6.34 5.39 -11.44 -0.06 -6.40 16 5 C 0.35 4.58 7.41 -154.76 -1.15 3.43 16 6 C -0.16 -2.02 9.57 -38.81 -0.37 -2.39 16 7 C -0.05 -0.68 5.22 -104.68 -0.55 -1.22 16 8 C 0.55 9.42 7.40 -12.18 -0.09 9.33 16 9 O -0.55 -10.55 16.34 5.36 0.09 -10.46 16 10 N -0.59 -10.06 2.98 -174.03 -0.52 -10.58 16 11 C 0.09 1.54 4.84 -3.94 -0.02 1.52 16 12 C -0.12 -2.53 5.19 -26.84 -0.14 -2.67 16 13 C 0.05 1.09 1.93 -91.73 -0.18 0.91 16 14 C -0.51 -13.43 8.48 -34.44 -0.29 -13.73 16 15 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 16 C 0.06 1.67 5.26 -17.82 -0.09 1.58 16 17 N -0.89 -24.19 11.98 55.43 0.66 -23.52 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.12 -2.43 5.30 -26.62 -0.14 -2.57 16 23 C 0.11 1.92 6.45 -3.71 -0.02 1.90 16 24 C -0.17 -2.18 7.48 -39.01 -0.29 -2.47 16 25 C 0.13 1.61 11.17 -17.62 -0.20 1.42 16 26 N -0.47 -6.86 7.90 -12.41 -0.10 -6.96 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.42 2.30 8.70 -40.82 -0.36 1.94 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.08 1.19 4.64 -51.93 -0.24 0.95 16 33 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.09 2.15 6.73 -51.93 -0.35 1.80 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 42 H 0.15 1.68 6.41 -52.49 -0.34 1.35 16 43 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -33.82 353.59 -8.61 -42.43 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.83 Total: 2.13 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.24 Total: -0.34 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.01 Total: -47.46 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.82 -8.61 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529000806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.689 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds