Wall clock time and date at job start Tue Mar 31 2020 11:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21273 * 120.00655 * 2 1 4 4 N 1.34778 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.39426 * 120.00606 * 185.25597 * 4 2 1 6 6 C 1.39007 * 119.63950 * 185.40771 * 5 4 2 7 7 C 1.39548 * 118.93875 * 180.02562 * 6 5 4 8 8 C 1.48166 * 120.89203 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99500 * 322.50427 * 8 7 6 10 10 N 1.34775 * 120.00014 * 142.49894 * 8 7 6 11 11 C 1.46917 * 120.63398 * 353.69722 * 10 8 7 12 12 C 1.52756 * 109.00992 * 233.58323 * 11 10 8 13 13 C 1.53038 * 109.38481 * 305.58902 * 12 11 10 14 14 C 1.50702 * 109.45279 * 181.25414 * 13 12 11 15 15 H 1.07998 * 119.99685 * 245.71981 * 14 13 12 16 16 C 1.37879 * 119.99715 * 65.71400 * 14 13 12 17 17 N 1.31520 * 120.00289 * 5.36307 * 16 14 13 18 18 Si 1.86800 * 119.99844 * 185.35299 * 16 14 13 19 19 H 1.48509 * 109.46878 * 95.00162 * 18 16 14 20 20 H 1.48498 * 109.47489 * 215.00044 * 18 16 14 21 21 H 1.48497 * 109.47057 * 335.00547 * 18 16 14 22 22 C 1.53033 * 109.53905 * 61.23628 * 13 12 11 23 23 C 1.46932 * 120.62633 * 173.97636 * 10 8 7 24 24 C 1.39981 * 118.22367 * 0.02562 * 7 6 5 25 25 C 1.38003 * 119.15863 * 0.02562 * 24 7 6 26 26 N 1.31882 * 120.98851 * 0.02562 * 25 24 7 27 27 H 1.09000 * 109.47458 * 270.00462 * 1 2 3 28 28 H 1.09000 * 109.47095 * 29.99659 * 1 2 3 29 29 H 1.08994 * 109.47663 * 149.99641 * 1 2 3 30 30 H 0.97006 * 120.00160 * 5.26167 * 4 2 1 31 31 H 1.08001 * 120.53310 * 0.27887 * 6 5 4 32 32 H 1.09003 * 109.58942 * 353.41941 * 11 10 8 33 33 H 1.09000 * 109.58905 * 113.83862 * 11 10 8 34 34 H 1.09003 * 109.56531 * 185.55436 * 12 11 10 35 35 H 1.08998 * 109.36205 * 65.49851 * 12 11 10 36 36 H 1.09003 * 109.45765 * 301.21947 * 13 12 11 37 37 H 0.97002 * 120.00056 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.49981 * 178.68298 * 22 13 12 39 39 H 1.08999 * 109.49860 * 58.59204 * 22 13 12 40 40 H 1.08999 * 109.58374 * 246.15705 * 23 10 8 41 41 H 1.08999 * 109.58797 * 6.44272 * 23 10 8 42 42 H 1.08002 * 120.42222 * 180.02562 * 24 7 6 43 43 H 1.07991 * 119.50385 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5707 -1.1699 0.1111 6 6 4.2670 -2.3676 -0.0023 7 6 5.6578 -2.3535 0.1113 8 6 6.4431 -3.6048 -0.0020 9 8 6.0093 -4.6387 0.4665 10 7 7.6383 -3.5963 -0.6247 11 6 8.1140 -2.3900 -1.3154 12 6 8.4860 -2.7531 -2.7518 13 6 9.4899 -3.9082 -2.7400 14 6 9.8814 -4.2473 -4.1552 15 1 9.6116 -5.2049 -4.5753 16 6 10.5841 -3.3350 -4.9135 17 7 11.0042 -2.2132 -4.3704 18 14 10.9395 -3.6923 -6.7122 19 1 9.8965 -3.0584 -7.5582 20 1 12.2709 -3.1421 -7.0725 21 1 10.9335 -5.1603 -6.9358 22 6 8.8531 -5.1331 -2.0797 23 6 8.4877 -4.7952 -0.6309 24 6 6.2912 -1.1256 0.3363 25 6 5.5249 0.0177 0.4374 26 7 4.2117 -0.0329 0.3259 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6988 -2.0056 -0.0761 31 1 3.7405 -3.2938 -0.1796 32 1 7.3250 -1.6379 -1.3227 33 1 8.9914 -1.9968 -0.8019 34 1 8.9321 -1.8884 -3.2430 35 1 7.5890 -3.0563 -3.2917 36 1 10.3765 -3.6129 -2.1787 37 1 11.4988 -1.5716 -4.9038 38 1 9.5603 -5.9623 -2.0926 39 1 7.9526 -5.4139 -2.6259 40 1 9.3962 -4.6022 -0.0604 41 1 7.9460 -5.6291 -0.1844 42 1 7.3659 -1.0735 0.4295 43 1 6.0077 0.9679 0.6113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529000806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:26 Heat of formation + Delta-G solvation = -42.255703 kcal Electronic energy + Delta-G solvation = -26267.413484 eV Core-core repulsion = 22505.121076 eV Total energy + Delta-G solvation = -3762.292408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.15949 -41.11105 -39.80089 -38.46813 -36.11868 -35.36987 -34.04707 -32.80946 -32.06111 -31.63061 -29.85753 -28.26660 -26.20495 -24.75353 -24.30545 -23.79881 -22.38930 -21.26450 -20.27903 -19.26720 -18.42355 -18.14464 -17.72761 -17.21596 -16.76892 -16.61216 -16.56703 -16.42245 -15.94786 -15.42738 -14.98135 -14.87134 -14.79627 -14.76851 -14.52594 -14.23482 -13.99234 -13.49793 -13.29465 -13.25823 -13.07505 -12.94280 -12.77818 -12.50381 -12.18567 -12.05183 -11.85446 -11.54283 -11.44536 -11.21722 -11.01577 -10.94460 -10.76779 -10.42416 -10.19842 -9.64893 -9.36038 -8.11625 -6.20569 -0.27846 -0.04432 1.39829 1.42941 1.49799 1.51252 1.63677 1.84709 2.01033 2.43591 2.79027 3.17295 3.19339 3.39529 3.79993 3.84090 3.91631 4.04131 4.16680 4.24137 4.30304 4.41104 4.50640 4.54511 4.57197 4.62584 4.67480 4.70168 4.84289 4.92904 4.96610 5.04549 5.15641 5.17889 5.21925 5.35713 5.47251 5.60678 5.64120 5.96944 6.02713 6.18633 6.32679 6.38019 6.86238 6.89630 6.94068 7.25922 7.46541 8.95202 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.003068 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.319145 B = 9125.292932 C = 9868.993725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.495 3.505 3 O -0.536 6.536 4 N -0.652 5.652 5 C 0.346 3.654 6 C -0.153 4.153 7 C -0.065 4.065 8 C 0.558 3.442 9 O -0.571 6.571 10 N -0.590 5.590 11 C 0.104 3.896 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.114 4.114 23 C 0.116 3.884 24 C -0.167 4.167 25 C 0.128 3.872 26 N -0.496 5.496 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.437 0.563 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.510 2.695 10.608 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.284 3.716 3 O -0.409 6.409 4 N -0.301 5.301 5 C 0.114 3.886 6 C -0.177 4.177 7 C -0.076 4.076 8 C 0.347 3.653 9 O -0.452 6.452 10 N -0.320 5.320 11 C -0.017 4.017 12 C -0.150 4.150 13 C 0.026 3.974 14 C -0.572 4.572 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.770 3.230 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.152 4.152 23 C -0.005 4.005 24 C -0.189 4.189 25 C -0.029 4.029 26 N -0.212 5.212 27 H 0.133 0.867 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.278 0.722 31 H 0.175 0.825 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.783 3.849 10.874 21.196 hybrid contribution 0.957 -1.314 -1.409 2.151 sum -16.826 2.535 9.465 19.471 Atomic orbital electron populations 1.21932 0.86324 1.06834 1.06685 1.22096 0.92638 0.82417 0.74415 1.90813 1.71525 1.32309 1.46229 1.43804 1.02795 1.12038 1.71485 1.18523 0.86215 0.89079 0.94753 1.21566 0.93128 0.98704 1.04340 1.20042 0.93973 0.93657 0.99948 1.18461 0.80760 0.87976 0.78139 1.90718 1.70102 1.33665 1.50698 1.48130 1.17749 1.14863 1.51295 1.22216 1.00297 0.85996 0.93201 1.21670 0.97969 1.01236 0.94075 1.18615 0.93178 0.91311 0.94251 1.21522 1.35098 1.01220 0.99355 0.93518 1.25602 0.95364 0.95328 1.01677 1.70004 1.38123 1.09982 1.36986 0.85763 0.77421 0.78342 0.81445 1.20497 1.20920 1.19652 1.21861 0.99697 0.99481 0.94208 1.21716 0.94053 0.87175 0.97585 1.22588 1.02961 0.91592 1.01750 1.23057 0.87457 0.99427 0.92996 1.67526 1.11687 1.27616 1.14337 0.86682 0.88468 0.86794 0.72242 0.82538 0.88319 0.90122 0.91617 0.95344 0.96970 0.92956 0.91433 0.93992 0.90219 0.89581 0.82009 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.31 71.23 0.73 -0.45 16 2 C 0.50 9.58 7.89 87.66 0.69 10.27 16 3 O -0.54 -16.32 15.40 -3.01 -0.05 -16.36 16 4 N -0.65 -11.31 5.39 -308.51 -1.66 -12.98 16 5 C 0.35 8.54 7.41 132.92 0.98 9.52 16 6 C -0.15 -3.77 9.57 22.77 0.22 -3.55 16 7 C -0.06 -1.79 5.22 -19.90 -0.10 -1.90 16 8 C 0.56 18.25 7.40 86.88 0.64 18.89 16 9 O -0.57 -21.41 16.34 -3.75 -0.06 -21.47 16 10 N -0.59 -19.50 2.98 -822.80 -2.45 -21.95 16 11 C 0.10 3.43 4.84 86.22 0.42 3.84 16 12 C -0.11 -4.73 5.19 30.53 0.16 -4.57 16 13 C 0.05 2.09 1.93 -11.52 -0.02 2.07 16 14 C -0.53 -28.27 8.48 25.60 0.22 -28.05 16 15 H 0.05 2.48 7.75 -2.91 -0.02 2.46 16 16 C 0.02 1.05 5.26 84.65 0.44 1.49 16 17 N -0.91 -50.05 11.98 21.45 0.26 -49.80 16 18 Si 0.94 42.55 29.54 68.60 2.03 44.57 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.11 -4.49 5.30 30.67 0.16 -4.33 16 23 C 0.12 3.91 6.45 86.36 0.56 4.47 16 24 C -0.17 -3.98 7.48 22.64 0.17 -3.81 16 25 C 0.13 3.03 11.17 84.63 0.94 3.97 16 26 N -0.50 -14.07 7.90 -193.19 -1.53 -15.60 16 27 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.44 3.72 8.70 -92.70 -0.81 2.92 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.10 2.86 4.64 -2.39 -0.01 2.85 16 33 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 34 H 0.07 3.15 6.73 -2.39 -0.02 3.13 16 35 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.01 0.62 8.11 -2.39 -0.02 0.60 16 37 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.84 7.00 -2.39 -0.02 2.82 16 42 H 0.16 3.32 6.41 -2.91 -0.02 3.31 16 43 H 0.19 3.36 8.06 -2.92 -0.02 3.33 16 Total: -1.00 -74.18 353.59 2.99 -71.19 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.24 Total: 14.51 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.22 Total: 7.87 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.38 Total: -100.32 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.11 Total: -37.83 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.18 2.99 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529000806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.934 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds