Wall clock time and date at job start Tue Mar 31 2020 11:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99510 * 2 1 4 4 O 1.21495 * 120.00436 * 359.97438 * 3 2 1 5 5 C 1.48336 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.39306 * 119.57087 * 180.02562 * 5 3 2 7 7 C 1.38450 * 119.18625 * 180.02562 * 6 5 3 8 8 C 1.39865 * 118.36422 * 359.97438 * 7 6 5 9 9 C 1.48008 * 120.46571 * 179.97438 * 8 7 6 10 10 O 1.21524 * 120.00369 * 325.06589 * 9 8 7 11 11 N 1.34776 * 119.99564 * 145.06531 * 9 8 7 12 12 C 1.46928 * 120.62904 * 174.41405 * 11 9 8 13 13 C 1.53190 * 108.89564 * 126.45888 * 12 11 9 14 14 C 1.53044 * 109.31346 * 54.56222 * 13 12 11 15 15 C 1.50691 * 109.46333 * 178.62752 * 14 13 12 16 16 H 1.08000 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00350 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00195 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47172 * 90.00026 * 19 17 15 21 21 H 1.48504 * 109.46924 * 209.99727 * 19 17 15 22 22 H 1.48499 * 109.47111 * 329.99880 * 19 17 15 23 23 C 1.53043 * 109.53917 * 298.63979 * 14 13 12 24 24 C 1.46962 * 120.65798 * 354.22857 * 11 9 8 25 25 C 1.39729 * 119.07151 * 0.25624 * 8 7 6 26 26 N 1.31419 * 120.71751 * 359.49275 * 25 8 7 27 27 H 1.08997 * 109.47617 * 299.99858 * 1 2 3 28 28 H 1.09001 * 109.46971 * 60.00596 * 1 2 3 29 29 H 1.09005 * 109.46755 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00454 * 179.97438 * 2 1 3 31 31 H 1.07994 * 120.40546 * 359.97438 * 6 5 3 32 32 H 1.08008 * 120.81623 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.58484 * 6.60003 * 12 11 9 34 34 H 1.09004 * 109.58667 * 246.32033 * 12 11 9 35 35 H 1.09003 * 109.49937 * 174.51472 * 13 12 11 36 36 H 1.08999 * 109.49958 * 294.58243 * 13 12 11 37 37 H 1.09007 * 109.45769 * 58.65745 * 14 13 12 38 38 H 0.96999 * 119.99758 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49520 * 181.31406 * 23 14 13 40 40 H 1.09000 * 109.49023 * 301.40923 * 23 14 13 41 41 H 1.08999 * 109.46677 * 113.75362 * 24 11 9 42 42 H 1.09002 * 109.70989 * 353.46436 * 24 11 9 43 43 H 1.08005 * 119.64279 * 179.74502 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6221 1.1674 0.0006 6 6 4.3095 2.3790 0.0011 7 6 5.6940 2.3698 0.0011 8 6 6.3503 1.1347 0.0011 9 6 7.8289 1.0706 0.0005 10 8 8.4732 1.9061 -0.6025 11 7 8.4609 0.0855 0.6689 12 6 9.9198 -0.0641 0.5785 13 6 10.5047 -0.0881 1.9941 14 6 9.8103 -1.1809 2.8102 15 6 10.4066 -1.2300 4.1933 16 1 11.2008 -0.5498 4.4634 17 6 9.9382 -2.1433 5.1139 18 7 8.9714 -2.9719 4.7848 19 14 10.6769 -2.2037 6.8287 20 1 9.9245 -1.2887 7.7242 21 1 10.5941 -3.5900 7.3547 22 1 12.0990 -1.7804 6.7702 23 6 8.3147 -0.8723 2.9106 24 6 7.7050 -0.8572 1.5054 25 6 5.5904 -0.0379 -0.0043 26 7 4.2772 0.0131 0.0006 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7691 3.3140 0.0007 32 1 6.2535 3.2937 0.0019 33 1 10.3394 0.7752 0.0239 34 1 10.1605 -0.9965 0.0677 35 1 11.5735 -0.2961 1.9427 36 1 10.3448 0.8792 2.4703 37 1 9.9502 -2.1444 2.3200 38 1 8.6416 -3.6141 5.4326 39 1 7.8248 -1.6385 3.5116 40 1 8.1750 0.1022 3.3784 41 1 7.7630 -1.8553 1.0711 42 1 6.6627 -0.5436 1.5627 43 1 6.0876 -0.9967 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541976880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:03 Heat of formation + Delta-G solvation = -29.294712 kcal Electronic energy + Delta-G solvation = -26211.052873 eV Core-core repulsion = 22449.322495 eV Total energy + Delta-G solvation = -3761.730378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12794 -39.88431 -38.73611 -36.96690 -34.96607 -33.76559 -32.86183 -32.29135 -30.95626 -30.11763 -27.72226 -26.42518 -24.82302 -24.09347 -22.92751 -22.34143 -21.11910 -20.30210 -18.94616 -18.54205 -17.60830 -16.83357 -16.30790 -15.95803 -15.71328 -15.48864 -15.31136 -14.81414 -14.60317 -14.43246 -13.95483 -13.83268 -13.42119 -13.16205 -13.06252 -12.91928 -12.85326 -12.57709 -12.55534 -12.38932 -11.70134 -11.39487 -10.99406 -10.72192 -10.63470 -10.48256 -10.29215 -10.18186 -10.11815 -9.75354 -9.61866 -9.48250 -9.29821 -9.26171 -8.96756 -8.45905 -8.17768 -6.09999 -4.15937 0.13917 0.94346 2.28174 2.82553 2.91502 3.19285 3.24335 3.31814 3.34956 3.65379 3.82849 4.35788 4.45054 4.50134 4.59536 4.73680 4.90935 4.98274 5.19467 5.19565 5.35083 5.44181 5.47374 5.62316 5.71434 5.74815 5.85090 5.90428 6.03046 6.05915 6.15710 6.20494 6.31685 6.53248 6.75995 6.92113 7.01054 7.07626 7.16048 7.43435 7.56787 7.68985 7.82515 7.87321 7.95004 8.25758 8.32454 8.87275 9.49669 10.95638 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003253 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.226038 B = 8604.916350 C = 9940.966795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.573 3.427 4 O -0.532 6.532 5 C 0.087 3.913 6 C -0.117 4.117 7 C -0.029 4.029 8 C -0.148 4.148 9 C 0.555 3.445 10 O -0.545 6.545 11 N -0.589 5.589 12 C 0.112 3.888 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.088 3.912 25 C 0.131 3.869 26 N -0.463 5.463 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.415 0.585 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 3.302 -10.163 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.358 3.642 4 O -0.408 6.408 5 C -0.051 4.051 6 C -0.138 4.138 7 C -0.055 4.055 8 C -0.154 4.154 9 C 0.342 3.658 10 O -0.424 6.424 11 N -0.320 5.320 12 C -0.010 4.010 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.162 4.162 24 C -0.033 4.033 25 C -0.029 4.029 26 N -0.174 5.174 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.251 0.749 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.016 3.548 -10.389 17.027 hybrid contribution 1.055 0.154 1.144 1.564 sum -11.961 3.702 -9.245 15.564 Atomic orbital electron populations 1.21615 0.79038 1.02638 1.02493 1.45632 1.07835 1.09157 1.74082 1.17923 0.85741 0.84074 0.76491 1.90785 1.68836 1.31319 1.49846 1.21211 0.94134 0.89947 0.99785 1.22063 0.94106 0.99539 0.98043 1.21721 0.93629 0.98074 0.92087 1.21269 0.95476 0.95477 1.03155 1.18043 0.86295 0.81582 0.79869 1.90749 1.66956 1.39285 1.45433 1.48187 1.08738 1.29747 1.45347 1.21783 0.78189 1.01608 0.99410 1.22021 0.99683 1.01255 0.93268 1.18645 0.90745 0.92940 0.94667 1.21187 1.19069 1.17936 0.96891 0.92664 1.24954 0.95036 0.95339 0.98593 1.69819 1.27277 1.20957 1.34990 0.86611 0.79679 0.77229 0.84599 1.20734 1.21210 1.19946 1.22045 1.00170 1.02049 0.91977 1.22535 0.95062 0.91737 0.94000 1.23308 0.88550 0.98486 0.92550 1.67558 1.10152 1.28109 1.11567 0.91917 0.92000 0.90256 0.74930 0.82808 0.82996 0.90070 0.91665 0.91867 0.92842 0.95295 0.92921 0.87505 0.94177 0.91178 0.90771 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.72 -6.73 5.70 -67.89 -0.39 -7.12 16 3 C 0.57 7.05 7.82 -12.10 -0.09 6.95 16 4 O -0.53 -7.82 16.31 5.37 0.09 -7.73 16 5 C 0.09 1.08 6.75 -82.93 -0.56 0.52 16 6 C -0.12 -1.37 9.62 -39.11 -0.38 -1.74 16 7 C -0.03 -0.36 9.75 -38.89 -0.38 -0.73 16 8 C -0.15 -2.05 5.31 -104.73 -0.56 -2.61 16 9 C 0.56 9.11 7.41 -12.26 -0.09 9.02 16 10 O -0.55 -10.31 16.29 5.34 0.09 -10.22 16 11 N -0.59 -9.74 2.98 -173.79 -0.52 -10.25 16 12 C 0.11 1.88 6.44 -3.71 -0.02 1.85 16 13 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 14 C 0.05 1.09 2.06 -91.73 -0.19 0.90 16 15 C -0.51 -13.19 8.56 -34.45 -0.29 -13.48 16 16 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.62 11.31 55.43 0.63 -22.99 16 19 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.12 -2.59 5.15 -26.61 -0.14 -2.72 16 24 C 0.09 1.44 4.78 -3.69 -0.02 1.42 16 25 C 0.13 1.64 8.54 -17.17 -0.15 1.49 16 26 N -0.46 -5.63 9.52 -9.48 -0.09 -5.72 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.41 3.36 8.15 -40.82 -0.33 3.03 16 31 H 0.15 1.59 7.63 -52.49 -0.40 1.19 16 32 H 0.15 1.70 8.05 -52.48 -0.42 1.28 16 33 H 0.08 1.36 7.00 -51.93 -0.36 0.99 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.11 2.50 6.03 -51.93 -0.31 2.19 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.07 8.06 -51.93 -0.42 0.66 16 42 H 0.07 1.08 4.46 -51.93 -0.23 0.85 16 43 H 0.18 1.97 6.03 -52.48 -0.32 1.66 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.29 353.06 -8.08 -38.37 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.72 Total: 3.87 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.46 Total: 1.10 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.37 Total: -46.08 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -8.08 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.076 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds