Wall clock time and date at job start Tue Mar 31 2020 11:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99510 * 2 1 4 4 O 1.21495 * 120.00436 * 359.97438 * 3 2 1 5 5 C 1.48336 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.39306 * 119.57087 * 180.02562 * 5 3 2 7 7 C 1.38450 * 119.18625 * 180.02562 * 6 5 3 8 8 C 1.39865 * 118.36422 * 359.97438 * 7 6 5 9 9 C 1.48008 * 120.46571 * 179.97438 * 8 7 6 10 10 O 1.21524 * 120.00369 * 325.06589 * 9 8 7 11 11 N 1.34776 * 119.99564 * 145.06531 * 9 8 7 12 12 C 1.46928 * 120.62904 * 174.41405 * 11 9 8 13 13 C 1.53190 * 108.89564 * 126.45888 * 12 11 9 14 14 C 1.53044 * 109.31346 * 54.56222 * 13 12 11 15 15 C 1.50691 * 109.46333 * 178.62752 * 14 13 12 16 16 H 1.08000 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00350 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00195 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47172 * 90.00026 * 19 17 15 21 21 H 1.48504 * 109.46924 * 209.99727 * 19 17 15 22 22 H 1.48499 * 109.47111 * 329.99880 * 19 17 15 23 23 C 1.53043 * 109.53917 * 298.63979 * 14 13 12 24 24 C 1.46962 * 120.65798 * 354.22857 * 11 9 8 25 25 C 1.39729 * 119.07151 * 0.25624 * 8 7 6 26 26 N 1.31419 * 120.71751 * 359.49275 * 25 8 7 27 27 H 1.08997 * 109.47617 * 299.99858 * 1 2 3 28 28 H 1.09001 * 109.46971 * 60.00596 * 1 2 3 29 29 H 1.09005 * 109.46755 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00454 * 179.97438 * 2 1 3 31 31 H 1.07994 * 120.40546 * 359.97438 * 6 5 3 32 32 H 1.08008 * 120.81623 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.58484 * 6.60003 * 12 11 9 34 34 H 1.09004 * 109.58667 * 246.32033 * 12 11 9 35 35 H 1.09003 * 109.49937 * 174.51472 * 13 12 11 36 36 H 1.08999 * 109.49958 * 294.58243 * 13 12 11 37 37 H 1.09007 * 109.45769 * 58.65745 * 14 13 12 38 38 H 0.96999 * 119.99758 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49520 * 181.31406 * 23 14 13 40 40 H 1.09000 * 109.49023 * 301.40923 * 23 14 13 41 41 H 1.08999 * 109.46677 * 113.75362 * 24 11 9 42 42 H 1.09002 * 109.70989 * 353.46436 * 24 11 9 43 43 H 1.08005 * 119.64279 * 179.74502 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6221 1.1674 0.0006 6 6 4.3095 2.3790 0.0011 7 6 5.6940 2.3698 0.0011 8 6 6.3503 1.1347 0.0011 9 6 7.8289 1.0706 0.0005 10 8 8.4732 1.9061 -0.6025 11 7 8.4609 0.0855 0.6689 12 6 9.9198 -0.0641 0.5785 13 6 10.5047 -0.0881 1.9941 14 6 9.8103 -1.1809 2.8102 15 6 10.4066 -1.2300 4.1933 16 1 11.2008 -0.5498 4.4634 17 6 9.9382 -2.1433 5.1139 18 7 8.9714 -2.9719 4.7848 19 14 10.6769 -2.2037 6.8287 20 1 9.9245 -1.2887 7.7242 21 1 10.5941 -3.5900 7.3547 22 1 12.0990 -1.7804 6.7702 23 6 8.3147 -0.8723 2.9106 24 6 7.7050 -0.8572 1.5054 25 6 5.5904 -0.0379 -0.0043 26 7 4.2772 0.0131 0.0006 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7691 3.3140 0.0007 32 1 6.2535 3.2937 0.0019 33 1 10.3394 0.7752 0.0239 34 1 10.1605 -0.9965 0.0677 35 1 11.5735 -0.2961 1.9427 36 1 10.3448 0.8792 2.4703 37 1 9.9502 -2.1444 2.3200 38 1 8.6416 -3.6141 5.4326 39 1 7.8248 -1.6385 3.5116 40 1 8.1750 0.1022 3.3784 41 1 7.7630 -1.8553 1.0711 42 1 6.6627 -0.5436 1.5627 43 1 6.0876 -0.9967 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541976880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:02 Heat of formation + Delta-G solvation = -49.076065 kcal Electronic energy + Delta-G solvation = -26211.910656 eV Core-core repulsion = 22449.322495 eV Total energy + Delta-G solvation = -3762.588161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18861 -41.02398 -39.80494 -38.46141 -35.80367 -35.44561 -33.95251 -33.53471 -32.46155 -31.54930 -28.68965 -27.91103 -25.97426 -25.21740 -24.33692 -23.77993 -22.16275 -21.61862 -20.31307 -19.50977 -18.88618 -18.22862 -17.86523 -17.17556 -16.67496 -16.54343 -16.43148 -16.25698 -16.00771 -15.50394 -15.09915 -14.92276 -14.74830 -14.55184 -14.38158 -14.32696 -13.97165 -13.80722 -13.68628 -13.25683 -13.08957 -13.04322 -12.80703 -12.46810 -12.15713 -11.97220 -11.63638 -11.51598 -11.34341 -11.17029 -11.00081 -10.86965 -10.70494 -10.44200 -10.34115 -10.12437 -9.62531 -8.07593 -6.19524 -0.87570 -0.01218 1.23691 1.41198 1.44326 1.52128 1.71646 1.94007 2.03455 2.44577 2.65116 2.89437 3.19639 3.29039 3.57474 3.65436 3.77388 3.97180 4.05560 4.26014 4.33346 4.42339 4.43662 4.50839 4.58635 4.62862 4.68782 4.76479 4.80983 4.86635 4.94368 4.96368 5.19172 5.22111 5.25046 5.30733 5.41501 5.50905 5.64900 6.00164 6.12565 6.21394 6.33627 6.41101 6.53313 6.89534 6.95200 7.01854 7.48017 8.95693 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003253 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.226038 B = 8604.916350 C = 9940.966795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.705 5.705 3 C 0.568 3.432 4 O -0.562 6.562 5 C 0.083 3.917 6 C -0.114 4.114 7 C -0.025 4.025 8 C -0.164 4.164 9 C 0.560 3.440 10 O -0.572 6.572 11 N -0.591 5.591 12 C 0.117 3.883 13 C -0.115 4.115 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.045 0.955 17 C 0.020 3.980 18 N -0.909 5.909 19 Si 0.944 3.056 20 H -0.280 1.280 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.116 4.116 24 C 0.102 3.898 25 C 0.134 3.866 26 N -0.459 5.459 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.422 0.578 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.011 0.989 38 H 0.261 0.739 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 2.906 -10.710 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.353 3.647 4 O -0.440 6.440 5 C -0.055 4.055 6 C -0.135 4.135 7 C -0.051 4.051 8 C -0.169 4.169 9 C 0.348 3.652 10 O -0.453 6.453 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.153 4.153 14 C 0.027 3.973 15 C -0.573 4.573 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.548 5.548 19 Si 0.771 3.229 20 H -0.206 1.206 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.155 4.155 24 C -0.020 4.020 25 C -0.026 4.026 26 N -0.170 5.170 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.259 0.741 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.059 3.118 -10.937 18.083 hybrid contribution 1.338 0.271 1.321 1.899 sum -12.721 3.389 -9.616 16.303 Atomic orbital electron populations 1.21827 0.77479 1.04774 1.02139 1.45694 1.08924 1.08608 1.72289 1.17982 0.85713 0.84464 0.76590 1.90771 1.69250 1.32380 1.51629 1.21409 0.94486 0.90260 0.99298 1.22195 0.93797 1.00025 0.97441 1.21859 0.93925 0.98057 0.91281 1.21135 0.93939 0.96625 1.05220 1.18323 0.87248 0.80638 0.78996 1.90734 1.67880 1.40124 1.46559 1.48182 1.08614 1.29959 1.45436 1.21701 0.78472 1.02681 0.97605 1.21870 0.99876 0.99227 0.94376 1.18617 0.92089 0.93079 0.93498 1.21541 1.19134 1.17848 0.98739 0.93632 1.25574 0.95517 0.95280 1.01548 1.69918 1.27871 1.21228 1.35798 0.85772 0.78929 0.77191 0.81025 1.20611 1.20810 1.19837 1.21807 0.99135 1.00014 0.94513 1.22400 0.95613 0.92754 0.91228 1.23481 0.88585 0.98589 0.91989 1.67599 1.09864 1.27946 1.11593 0.92428 0.92171 0.86933 0.74077 0.81561 0.82098 0.89711 0.89934 0.91469 0.94195 0.97092 0.92926 0.89980 0.95856 0.89560 0.88664 0.79182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.70 127.77 1.37 2.34 16 2 N -0.70 -11.86 5.70 -486.99 -2.78 -14.63 16 3 C 0.57 13.14 7.82 86.93 0.68 13.82 16 4 O -0.56 -15.96 16.31 -3.70 -0.06 -16.02 16 5 C 0.08 1.92 6.75 41.96 0.28 2.20 16 6 C -0.11 -2.49 9.62 22.58 0.22 -2.27 16 7 C -0.02 -0.58 9.75 22.71 0.22 -0.36 16 8 C -0.16 -4.25 5.31 -19.93 -0.11 -4.36 16 9 C 0.56 17.59 7.41 86.83 0.64 18.23 16 10 O -0.57 -21.03 16.29 -3.79 -0.06 -21.09 16 11 N -0.59 -18.73 2.98 -822.04 -2.45 -21.18 16 12 C 0.12 3.80 6.44 86.36 0.56 4.36 16 13 C -0.12 -4.43 5.30 30.67 0.16 -4.27 16 14 C 0.05 2.07 2.06 -11.51 -0.02 2.05 16 15 C -0.53 -27.87 8.56 25.60 0.22 -27.65 16 16 H 0.05 2.39 7.74 -2.91 -0.02 2.37 16 17 C 0.02 1.05 5.30 84.65 0.45 1.50 16 18 N -0.91 -48.39 11.31 21.45 0.24 -48.15 16 19 Si 0.94 41.92 29.54 68.60 2.03 43.95 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C -0.12 -4.85 5.15 30.67 0.16 -4.69 16 24 C 0.10 3.17 4.78 86.36 0.41 3.58 16 25 C 0.13 3.05 8.54 85.12 0.73 3.77 16 26 N -0.46 -10.20 9.52 -183.89 -1.75 -11.95 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.42 5.85 8.15 -92.71 -0.76 5.09 16 31 H 0.17 3.20 7.63 -2.91 -0.02 3.17 16 32 H 0.16 3.39 8.05 -2.91 -0.02 3.37 16 33 H 0.08 2.73 7.00 -2.39 -0.02 2.72 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 39 H 0.08 3.87 6.03 -2.39 -0.01 3.86 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 42 H 0.10 2.59 4.46 -2.39 -0.01 2.58 16 43 H 0.19 3.74 6.03 -2.91 -0.02 3.72 16 Total: -1.00 -64.78 353.06 1.43 -63.35 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.29 Total: 17.48 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.97 Total: 8.25 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -6.73 Total: -95.91 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.12 Total: -37.11 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -64.78 1.43 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.271 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds