Wall clock time and date at job start Tue Mar 31 2020 11:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35969 * 117.00387 * 2 1 4 4 C 1.38491 * 120.03989 * 0.02562 * 3 2 1 5 5 C 1.38842 * 119.94506 * 179.97438 * 4 3 2 6 6 N 1.39868 * 119.98946 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00380 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47372 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47015 * 305.00129 * 8 7 6 10 10 C 1.47204 * 109.47023 * 65.00305 * 8 7 6 11 11 N 7.72020 * 74.96766 * 17.38255 * 2 1 3 12 12 C 1.52993 * 109.47269 * 185.00353 * 8 7 6 13 13 C 1.50697 * 109.47446 * 175.00041 * 12 8 7 14 14 H 1.08007 * 119.99878 * 359.97438 * 13 12 8 15 15 C 1.37878 * 120.00288 * 179.71980 * 13 12 8 16 16 N 1.31511 * 119.99887 * 0.28375 * 15 13 12 17 17 Si 1.86796 * 119.99891 * 180.27541 * 15 13 12 18 18 H 1.48498 * 109.47464 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47172 * 120.00487 * 17 15 13 20 20 H 1.48501 * 109.47221 * 240.00388 * 17 15 13 21 21 C 1.38904 * 120.02662 * 0.25314 * 5 4 3 22 22 C 1.38147 * 120.08861 * 359.48471 * 21 5 4 23 23 C 1.38712 * 120.05585 * 0.51772 * 22 21 5 24 24 N 1.40346 * 120.01655 * 179.71444 * 23 22 21 25 25 C 1.34786 * 119.99542 * 24.81731 * 24 23 22 26 26 C 1.50700 * 119.99411 * 185.53080 * 25 24 23 27 27 O 1.21295 * 120.00266 * 5.52400 * 25 24 23 28 28 H 1.09005 * 109.47558 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47475 * 299.99892 * 1 2 3 30 30 H 1.09003 * 109.47355 * 60.00007 * 1 2 3 31 31 H 1.08004 * 120.02920 * 359.97438 * 4 3 2 32 32 H 0.97000 * 119.99734 * 0.02562 * 6 5 4 33 33 H 1.09005 * 109.46610 * 60.00039 * 7 6 5 34 34 H 1.08996 * 109.46782 * 300.00288 * 7 6 5 35 35 H 1.09006 * 109.47472 * 54.99903 * 12 8 7 36 36 H 1.09003 * 109.46764 * 294.99968 * 12 8 7 37 37 H 0.96998 * 120.00040 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.95877 * 179.73044 * 21 5 4 39 39 H 1.08001 * 119.97556 * 180.25434 * 22 21 5 40 40 H 0.96993 * 120.00162 * 204.81218 * 24 23 22 41 41 H 1.08999 * 109.47625 * 59.99779 * 26 25 24 42 42 H 1.09000 * 109.46522 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47298 * 299.99501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3735 0.0005 5 6 1.9253 3.6095 0.0011 6 7 1.1654 4.7837 0.0011 7 6 1.8324 6.0881 0.0022 8 6 0.7803 7.1990 0.0013 9 1 0.1035 7.0577 -0.8413 10 6 0.0157 7.1516 1.2583 11 7 -0.5734 7.1155 2.2275 12 6 1.4731 8.5574 -0.1233 13 6 0.4340 9.6417 -0.2477 14 1 -0.6156 9.3873 -0.2392 15 6 0.8231 10.9590 -0.3671 16 7 2.1012 11.2687 -0.3781 17 14 -0.4651 12.3038 -0.5136 18 1 -1.8201 11.6976 -0.4751 19 1 -0.3171 13.2562 0.6162 20 1 -0.2821 13.0268 -1.7977 21 6 3.3126 3.6805 -0.0042 22 6 4.0653 2.5221 0.0007 23 6 3.4372 1.2854 0.0001 24 7 4.2028 0.1091 -0.0010 25 6 5.4585 0.1220 0.4886 26 6 6.3242 -1.1063 0.3745 27 8 5.8918 1.1221 1.0207 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2143 2.3184 0.0005 32 1 0.1966 4.7344 0.0011 33 1 2.4560 6.1780 -0.8873 34 1 2.4546 6.1771 0.8927 35 1 2.1096 8.5609 -1.0082 36 1 2.0818 8.7374 0.7628 37 1 2.3750 12.1955 -0.4617 38 1 3.8034 4.6425 -0.0082 39 1 5.1438 2.5794 0.0007 40 1 3.8282 -0.7130 -0.3538 41 1 6.4540 -1.3631 -0.6768 42 1 7.2978 -0.9074 0.8225 43 1 5.8472 -1.9367 0.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554487744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:09 Heat of formation + Delta-G solvation = -25.688796 kcal Electronic energy + Delta-G solvation = -25173.781388 eV Core-core repulsion = 21412.207375 eV Total energy + Delta-G solvation = -3761.574013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82455 -39.42295 -38.25113 -36.87748 -35.43923 -34.26256 -33.36070 -31.77966 -30.38866 -30.14853 -28.47978 -27.22578 -26.09206 -23.81988 -22.94048 -21.89162 -21.38815 -20.50624 -18.56983 -17.43156 -17.31480 -16.93134 -16.55005 -16.25986 -15.92785 -15.50682 -15.34629 -14.90034 -14.52922 -14.43826 -13.96978 -13.71677 -13.43858 -13.16022 -13.12610 -12.94163 -12.77144 -12.63051 -12.44584 -12.22583 -12.06167 -11.69704 -11.55353 -11.42553 -11.27399 -11.14913 -10.82074 -10.71981 -10.61349 -10.39255 -9.90474 -9.70938 -9.32201 -9.11160 -8.52341 -8.43058 -7.03179 -6.16029 -4.20008 1.45990 1.48108 2.51586 2.92786 3.11736 3.24286 3.32874 3.35930 3.43662 3.49107 3.60313 3.90828 4.35445 4.52694 4.64174 4.80634 4.91117 4.93459 4.95021 5.04126 5.14668 5.22173 5.23947 5.30459 5.33259 5.46122 5.57441 5.63818 5.68358 5.83494 5.95614 6.15845 6.23559 6.33127 6.38557 6.56073 6.72325 7.15437 7.32750 7.34078 7.41235 7.42291 7.78088 7.78340 8.02734 8.13842 8.28984 8.84225 9.46036 10.94783 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002440 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.800677 B =11473.330516 C =12481.354876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.144 3.856 4 C -0.270 4.270 5 C 0.248 3.752 6 N -0.743 5.743 7 C 0.129 3.871 8 C -0.002 4.002 9 H 0.108 0.892 10 C 0.238 3.762 11 N -0.466 5.466 12 C 0.033 3.967 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.210 4.210 22 C -0.044 4.044 23 C 0.048 3.952 24 N -0.658 5.658 25 C 0.504 3.496 26 C -0.172 4.172 27 O -0.532 6.532 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.398 0.602 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.410 0.590 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -26.762 -4.018 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.294 4.294 5 C 0.142 3.858 6 N -0.371 5.371 7 C 0.004 3.996 8 C -0.024 4.024 9 H 0.126 0.874 10 C -0.079 4.079 11 N -0.143 5.143 12 C -0.005 4.005 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.233 4.233 22 C -0.064 4.064 23 C -0.047 4.047 24 N -0.303 5.303 25 C 0.292 3.708 26 C -0.231 4.231 27 O -0.409 6.409 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.245 0.755 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.092 -25.987 -2.192 26.262 hybrid contribution -1.423 0.658 -0.578 1.671 sum 1.669 -25.329 -2.770 25.534 Atomic orbital electron populations 1.23014 0.78215 1.03572 1.01648 1.85946 1.21568 1.26905 1.89166 1.18296 0.89946 0.84124 0.97956 1.20341 0.99479 0.90480 1.19119 1.17577 0.90924 0.85783 0.91506 1.44957 1.07954 1.03000 1.81201 1.21580 0.95104 0.80126 1.02741 1.19480 0.95193 0.99329 0.88428 0.87448 1.29070 0.92983 0.91356 0.94533 1.80993 1.10669 1.10511 1.12131 1.19165 0.95995 0.86280 0.99100 1.21131 0.92784 0.91431 1.51392 0.92457 1.24952 0.95327 0.98816 0.94844 1.69938 1.14487 1.18712 1.49574 0.86522 0.81800 0.81905 0.77764 1.19733 1.20923 1.20768 1.20595 0.91444 0.99060 1.12223 1.20997 1.01169 0.89203 0.95058 1.16804 0.86464 0.86961 1.14441 1.43281 1.14162 1.11412 1.61414 1.20906 0.81913 0.90541 0.77435 1.21905 1.00644 0.96037 1.04558 1.90702 1.72999 1.34893 1.42320 0.88489 0.92602 0.92546 0.85431 0.76786 0.89918 0.91408 0.93914 0.95261 0.92713 0.85118 0.83290 0.75482 0.89235 0.88735 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.22 9.90 -19.64 -0.19 -3.41 16 3 C 0.14 1.72 6.70 -39.10 -0.26 1.46 16 4 C -0.27 -3.25 8.88 -39.26 -0.35 -3.60 16 5 C 0.25 3.28 6.65 -83.72 -0.56 2.73 16 6 N -0.74 -9.63 5.53 -58.60 -0.32 -9.95 16 7 C 0.13 1.83 4.27 -4.04 -0.02 1.81 16 8 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 9 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 10 C 0.24 4.63 13.45 -20.80 -0.28 4.35 16 11 N -0.47 -9.99 18.53 42.11 0.78 -9.21 16 12 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 13 C -0.53 -13.67 8.60 -34.44 -0.30 -13.97 16 14 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.21 -2.86 9.31 -39.37 -0.37 -3.22 16 22 C -0.04 -0.60 8.72 -39.44 -0.34 -0.94 16 23 C 0.05 0.61 6.45 -83.39 -0.54 0.07 16 24 N -0.66 -6.47 5.29 -9.69 -0.05 -6.52 16 25 C 0.50 5.17 7.75 -10.98 -0.09 5.09 16 26 C -0.17 -0.92 10.32 36.01 0.37 -0.55 16 27 O -0.53 -7.78 14.25 5.54 0.08 -7.70 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.13 1.30 6.29 -52.48 -0.33 0.97 16 32 H 0.40 4.79 8.23 -40.82 -0.34 4.45 16 33 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 34 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.13 1.70 6.72 -52.49 -0.35 1.35 16 39 H 0.15 2.12 5.78 -52.49 -0.30 1.82 16 40 H 0.41 2.89 8.34 -40.82 -0.34 2.55 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -33.08 370.16 -6.35 -39.43 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.78 Total: 3.72 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.16 Total: -3.60 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 1.14 Total: -49.97 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.12 Total: -11.11 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.08 -6.35 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.742 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds