Wall clock time and date at job start Tue Mar 31 2020 11:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35969 * 117.00387 * 2 1 4 4 C 1.38491 * 120.03989 * 0.02562 * 3 2 1 5 5 C 1.38842 * 119.94506 * 179.97438 * 4 3 2 6 6 N 1.39868 * 119.98946 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00380 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47372 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47015 * 305.00129 * 8 7 6 10 10 C 1.47204 * 109.47023 * 65.00305 * 8 7 6 11 11 N 7.72020 * 74.96766 * 17.38255 * 2 1 3 12 12 C 1.52993 * 109.47269 * 185.00353 * 8 7 6 13 13 C 1.50697 * 109.47446 * 175.00041 * 12 8 7 14 14 H 1.08007 * 119.99878 * 359.97438 * 13 12 8 15 15 C 1.37878 * 120.00288 * 179.71980 * 13 12 8 16 16 N 1.31511 * 119.99887 * 0.28375 * 15 13 12 17 17 Si 1.86796 * 119.99891 * 180.27541 * 15 13 12 18 18 H 1.48498 * 109.47464 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47172 * 120.00487 * 17 15 13 20 20 H 1.48501 * 109.47221 * 240.00388 * 17 15 13 21 21 C 1.38904 * 120.02662 * 0.25314 * 5 4 3 22 22 C 1.38147 * 120.08861 * 359.48471 * 21 5 4 23 23 C 1.38712 * 120.05585 * 0.51772 * 22 21 5 24 24 N 1.40346 * 120.01655 * 179.71444 * 23 22 21 25 25 C 1.34786 * 119.99542 * 24.81731 * 24 23 22 26 26 C 1.50700 * 119.99411 * 185.53080 * 25 24 23 27 27 O 1.21295 * 120.00266 * 5.52400 * 25 24 23 28 28 H 1.09005 * 109.47558 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47475 * 299.99892 * 1 2 3 30 30 H 1.09003 * 109.47355 * 60.00007 * 1 2 3 31 31 H 1.08004 * 120.02920 * 359.97438 * 4 3 2 32 32 H 0.97000 * 119.99734 * 0.02562 * 6 5 4 33 33 H 1.09005 * 109.46610 * 60.00039 * 7 6 5 34 34 H 1.08996 * 109.46782 * 300.00288 * 7 6 5 35 35 H 1.09006 * 109.47472 * 54.99903 * 12 8 7 36 36 H 1.09003 * 109.46764 * 294.99968 * 12 8 7 37 37 H 0.96998 * 120.00040 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.95877 * 179.73044 * 21 5 4 39 39 H 1.08001 * 119.97556 * 180.25434 * 22 21 5 40 40 H 0.96993 * 120.00162 * 204.81218 * 24 23 22 41 41 H 1.08999 * 109.47625 * 59.99779 * 26 25 24 42 42 H 1.09000 * 109.46522 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47298 * 299.99501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3735 0.0005 5 6 1.9253 3.6095 0.0011 6 7 1.1654 4.7837 0.0011 7 6 1.8324 6.0881 0.0022 8 6 0.7803 7.1990 0.0013 9 1 0.1035 7.0577 -0.8413 10 6 0.0157 7.1516 1.2583 11 7 -0.5734 7.1155 2.2275 12 6 1.4731 8.5574 -0.1233 13 6 0.4340 9.6417 -0.2477 14 1 -0.6156 9.3873 -0.2392 15 6 0.8231 10.9590 -0.3671 16 7 2.1012 11.2687 -0.3781 17 14 -0.4651 12.3038 -0.5136 18 1 -1.8201 11.6976 -0.4751 19 1 -0.3171 13.2562 0.6162 20 1 -0.2821 13.0268 -1.7977 21 6 3.3126 3.6805 -0.0042 22 6 4.0653 2.5221 0.0007 23 6 3.4372 1.2854 0.0001 24 7 4.2028 0.1091 -0.0010 25 6 5.4585 0.1220 0.4886 26 6 6.3242 -1.1063 0.3745 27 8 5.8918 1.1221 1.0207 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2143 2.3184 0.0005 32 1 0.1966 4.7344 0.0011 33 1 2.4560 6.1780 -0.8873 34 1 2.4546 6.1771 0.8927 35 1 2.1096 8.5609 -1.0082 36 1 2.0818 8.7374 0.7628 37 1 2.3750 12.1955 -0.4617 38 1 3.8034 4.6425 -0.0082 39 1 5.1438 2.5794 0.0007 40 1 3.8282 -0.7130 -0.3538 41 1 6.4540 -1.3631 -0.6768 42 1 7.2978 -0.9074 0.8225 43 1 5.8472 -1.9367 0.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554487744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:08 Heat of formation + Delta-G solvation = -47.707260 kcal Electronic energy + Delta-G solvation = -25174.736180 eV Core-core repulsion = 21412.207375 eV Total energy + Delta-G solvation = -3762.528806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70081 -40.27513 -39.33145 -38.15040 -36.56203 -35.69720 -34.84775 -33.26868 -31.29967 -30.97987 -29.38955 -28.35013 -27.25625 -25.18137 -24.02794 -23.47586 -22.35950 -21.35448 -19.45893 -18.75520 -18.40218 -18.16532 -17.92049 -17.27003 -16.75918 -16.59812 -16.31815 -16.13368 -15.89367 -15.32771 -15.17832 -14.80905 -14.54095 -14.51127 -14.23127 -14.15066 -13.89543 -13.66769 -13.56233 -13.23617 -13.17830 -13.01453 -12.89804 -12.66296 -12.44608 -12.42155 -12.32764 -12.14262 -11.95675 -11.65016 -11.50824 -11.21485 -10.78934 -10.57135 -10.08680 -9.35580 -8.20965 -8.00994 -6.29262 0.47570 0.52782 1.38618 1.42080 1.51594 1.71539 1.89271 1.91983 2.19970 2.29960 2.40341 2.54688 2.93295 3.12554 3.17975 3.85424 3.92387 4.00922 4.25372 4.26115 4.31470 4.43379 4.44625 4.51467 4.61654 4.68369 4.70779 4.74209 4.78934 4.84408 4.88420 4.96157 5.15415 5.27283 5.39694 5.45411 5.58099 5.59277 5.76590 5.78667 6.14274 6.26132 6.44078 6.60055 6.69185 6.81058 6.86599 7.27275 7.39636 8.90175 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002440 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.800677 B =11473.330516 C =12481.354876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.324 6.324 3 C 0.146 3.854 4 C -0.269 4.269 5 C 0.238 3.762 6 N -0.740 5.740 7 C 0.142 3.858 8 C 0.013 3.987 9 H 0.133 0.867 10 C 0.250 3.750 11 N -0.500 5.500 12 C 0.037 3.963 13 C -0.538 4.538 14 H 0.057 0.943 15 C 0.011 3.989 16 N -0.923 5.923 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.224 4.224 22 C -0.058 4.058 23 C 0.039 3.961 24 N -0.649 5.649 25 C 0.496 3.504 26 C -0.161 4.161 27 O -0.583 6.583 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.003 0.997 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.424 0.576 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -28.969 -4.963 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.237 6.237 3 C 0.097 3.903 4 C -0.293 4.293 5 C 0.132 3.868 6 N -0.369 5.369 7 C 0.016 3.984 8 C -0.009 4.009 9 H 0.150 0.850 10 C -0.067 4.067 11 N -0.177 5.177 12 C -0.001 4.001 13 C -0.576 4.576 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.563 5.563 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.247 4.247 22 C -0.079 4.079 23 C -0.057 4.057 24 N -0.295 5.295 25 C 0.287 3.713 26 C -0.220 4.220 27 O -0.464 6.464 28 H 0.142 0.858 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.239 0.761 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.834 -28.252 -3.157 28.487 hybrid contribution -1.058 1.235 -0.277 1.649 sum 0.776 -27.018 -3.434 27.246 Atomic orbital electron populations 1.23311 0.76394 1.05565 1.02023 1.85953 1.23350 1.25685 1.88749 1.18328 0.89837 0.84899 0.97186 1.20559 1.00538 0.89978 1.18178 1.17629 0.90731 0.86211 0.92191 1.44748 1.08133 1.02335 1.81688 1.21355 0.94023 0.79907 1.03096 1.19369 0.95636 0.97698 0.88193 0.84960 1.29474 0.92279 0.90383 0.94528 1.80997 1.12017 1.11527 1.13174 1.18983 0.95223 0.88212 0.97726 1.21556 0.93517 0.92444 1.50079 0.92481 1.25716 0.96945 1.01148 0.95047 1.70035 1.16050 1.19129 1.51048 0.85637 0.79732 0.79392 0.77757 1.19243 1.21328 1.19878 1.20650 0.91972 0.99070 1.12996 1.20961 1.00724 0.90055 0.96171 1.16977 0.87321 0.87543 1.13888 1.43310 1.14021 1.11189 1.60991 1.21863 0.82025 0.91338 0.76074 1.21923 0.99434 0.94077 1.06577 1.90684 1.73891 1.37158 1.44624 0.85817 0.92625 0.91706 0.83501 0.76068 0.88485 0.92363 0.94038 0.97849 0.92701 0.85337 0.84531 0.73777 0.86681 0.89016 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.71 9.90 -93.20 -0.92 -6.63 16 3 C 0.15 3.27 6.70 22.58 0.15 3.42 16 4 C -0.27 -6.05 8.88 22.47 0.20 -5.85 16 5 C 0.24 6.10 6.65 38.16 0.25 6.35 16 6 N -0.74 -18.22 5.53 -339.31 -1.88 -20.09 16 7 C 0.14 3.89 4.27 86.38 0.37 4.26 16 8 C 0.01 0.42 2.26 -12.60 -0.03 0.39 16 9 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 10 C 0.25 9.55 13.45 89.46 1.20 10.76 16 11 N -0.50 -21.19 18.53 19.99 0.37 -20.82 16 12 C 0.04 1.65 4.42 29.84 0.13 1.79 16 13 C -0.54 -27.59 8.60 25.60 0.22 -27.37 16 14 H 0.06 2.87 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.57 5.46 84.66 0.46 1.03 16 16 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 17 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.22 -6.17 9.31 22.41 0.21 -5.96 16 22 C -0.06 -1.64 8.72 22.36 0.19 -1.44 16 23 C 0.04 0.95 6.45 38.14 0.25 1.20 16 24 N -0.65 -12.08 5.29 -302.96 -1.60 -13.69 16 25 C 0.50 9.89 7.75 87.66 0.68 10.57 16 26 C -0.16 -1.38 10.32 71.24 0.74 -0.64 16 27 O -0.58 -17.55 14.25 -3.08 -0.04 -17.60 16 28 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.63 7.66 -2.38 -0.02 0.62 16 30 H 0.06 0.62 7.66 -2.39 -0.02 0.61 16 31 H 0.15 2.64 6.29 -2.91 -0.02 2.62 16 32 H 0.40 8.96 8.23 -92.71 -0.76 8.20 16 33 H 0.10 2.43 7.94 -2.38 -0.02 2.41 16 34 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 35 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.13 3.46 6.72 -2.91 -0.02 3.44 16 39 H 0.14 4.15 5.78 -2.91 -0.02 4.13 16 40 H 0.42 5.14 8.34 -92.71 -0.77 4.36 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -72.21 370.16 3.90 -68.31 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.47 Total: 17.97 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.14 Total: -0.15 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -2.82 Total: -106.73 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.97 Total: -24.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.21 3.90 -68.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.605 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds