Wall clock time and date at job start Tue Mar 31 2020 11:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99857 * 2 1 4 4 C 1.38490 * 120.04902 * 0.02562 * 3 2 1 5 5 C 1.38830 * 119.94540 * 179.97438 * 4 3 2 6 6 N 1.39880 * 119.98844 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00626 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47266 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47468 * 55.00308 * 8 7 6 10 10 C 1.47198 * 109.47154 * 294.99886 * 8 7 6 11 11 N 7.72018 * 74.99071 * 342.60383 * 2 1 3 12 12 C 1.53003 * 109.46909 * 175.00247 * 8 7 6 13 13 C 1.50709 * 109.46932 * 184.99876 * 12 8 7 14 14 H 1.07996 * 119.99596 * 0.02562 * 13 12 8 15 15 C 1.37875 * 119.99778 * 179.71937 * 13 12 8 16 16 N 1.31509 * 120.00212 * 0.28402 * 15 13 12 17 17 Si 1.86798 * 119.99702 * 180.27695 * 15 13 12 18 18 H 1.48498 * 109.47503 * 60.00648 * 17 15 13 19 19 H 1.48510 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47107 * 299.99968 * 17 15 13 21 21 C 1.38902 * 120.03395 * 0.24882 * 5 4 3 22 22 C 1.38147 * 120.08462 * 359.49085 * 21 5 4 23 23 C 1.38707 * 120.05512 * 0.51084 * 22 21 5 24 24 N 1.40350 * 120.01621 * 179.72164 * 23 22 21 25 25 C 1.34779 * 119.99985 * 24.81700 * 24 23 22 26 26 C 1.50693 * 120.00177 * 185.53174 * 25 24 23 27 27 O 1.21302 * 119.99731 * 5.52794 * 25 24 23 28 28 H 1.09004 * 109.47327 * 300.00272 * 1 2 3 29 29 H 1.09003 * 109.46946 * 59.99874 * 1 2 3 30 30 H 1.08994 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02636 * 359.97438 * 4 3 2 32 32 H 0.97005 * 119.99366 * 0.02562 * 6 5 4 33 33 H 1.09006 * 109.46988 * 60.00143 * 7 6 5 34 34 H 1.09002 * 109.47030 * 300.00794 * 7 6 5 35 35 H 1.08992 * 109.47532 * 65.00233 * 12 8 7 36 36 H 1.08998 * 109.47317 * 304.99427 * 12 8 7 37 37 H 0.97000 * 120.00094 * 179.97438 * 16 15 13 38 38 H 1.07997 * 119.96207 * 179.72621 * 21 5 4 39 39 H 1.08004 * 119.97333 * 180.25656 * 22 21 5 40 40 H 0.96997 * 120.00049 * 204.81156 * 24 23 22 41 41 H 1.09000 * 109.47484 * 59.99380 * 26 25 24 42 42 H 1.08998 * 109.47236 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47088 * 299.99721 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2929 2.3736 0.0005 5 6 1.9254 3.6094 0.0011 6 7 1.1654 4.7838 0.0011 7 6 1.8324 6.0881 0.0022 8 6 0.7804 7.1989 0.0026 9 1 0.1023 7.0569 0.8441 10 6 0.0176 7.1527 -1.2555 11 7 -0.5703 7.1157 -2.2294 12 6 1.4731 8.5572 0.1294 13 6 0.4337 9.6415 0.2533 14 1 -0.6158 9.3871 0.2431 15 6 0.8229 10.9575 0.3861 16 7 2.1009 11.2672 0.3990 17 14 -0.4653 12.3006 0.5474 18 1 -1.2950 12.0486 1.7529 19 1 0.2070 13.6186 0.6754 20 1 -1.3320 12.3026 -0.6585 21 6 3.3126 3.6805 -0.0041 22 6 4.0654 2.5221 0.0007 23 6 3.4372 1.2854 0.0002 24 7 4.2028 0.1091 -0.0008 25 6 5.4585 0.1219 0.4888 26 6 6.3242 -1.1063 0.3749 27 8 5.8918 1.1221 1.0210 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2144 2.3184 0.0005 32 1 0.1966 4.7344 0.0011 33 1 2.4560 6.1780 -0.8873 34 1 2.4548 6.1771 0.8926 35 1 2.0830 8.7381 -0.7555 36 1 2.1082 8.5599 1.0153 37 1 2.3747 12.1931 0.4921 38 1 3.8034 4.6425 -0.0082 39 1 5.1439 2.5795 0.0009 40 1 3.8282 -0.7131 -0.3537 41 1 6.4540 -1.3632 -0.6764 42 1 7.2977 -0.9074 0.8229 43 1 5.8471 -1.9366 0.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554487745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:12 Heat of formation + Delta-G solvation = -25.894918 kcal Electronic energy + Delta-G solvation = -25169.011491 eV Core-core repulsion = 21407.428539 eV Total energy + Delta-G solvation = -3761.582951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82465 -39.42239 -38.24748 -36.85659 -35.41969 -34.23845 -33.35698 -31.77635 -30.38874 -30.14873 -28.48005 -27.22519 -26.09096 -23.81944 -22.93989 -21.89130 -21.38859 -20.50572 -18.56954 -17.43042 -17.31572 -16.95020 -16.52759 -16.23758 -15.95390 -15.50274 -15.34617 -14.89918 -14.53356 -14.43779 -13.97677 -13.71944 -13.34851 -13.28065 -13.08284 -12.96377 -12.71418 -12.66877 -12.37111 -12.25609 -12.06672 -11.69859 -11.56687 -11.42367 -11.25059 -11.10216 -10.85662 -10.70789 -10.64577 -10.37377 -9.90453 -9.70112 -9.34723 -9.11304 -8.51331 -8.43056 -7.03212 -6.15383 -4.19638 1.46003 1.48070 2.51589 2.92756 3.11848 3.27057 3.32050 3.34231 3.41761 3.46711 3.59170 3.90792 4.35725 4.52725 4.63201 4.80646 4.91112 4.93460 4.94960 5.04098 5.14622 5.22506 5.23899 5.30451 5.33225 5.46116 5.56936 5.63664 5.68294 5.83425 5.96385 6.15724 6.23205 6.33070 6.38524 6.56051 6.72288 7.15393 7.32931 7.34188 7.41163 7.42235 7.78091 7.78319 8.02616 8.14100 8.28214 8.84047 9.46266 10.95322 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.002451 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.118139 B =11422.154993 C =12524.136691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.144 3.856 4 C -0.270 4.270 5 C 0.248 3.752 6 N -0.743 5.743 7 C 0.129 3.871 8 C -0.002 4.002 9 H 0.108 0.892 10 C 0.238 3.762 11 N -0.467 5.467 12 C 0.034 3.966 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.210 4.210 22 C -0.044 4.044 23 C 0.048 3.952 24 N -0.658 5.658 25 C 0.504 3.496 26 C -0.172 4.172 27 O -0.532 6.532 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.398 0.602 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.410 0.590 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -26.735 0.900 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.294 4.294 5 C 0.142 3.858 6 N -0.371 5.371 7 C 0.005 3.995 8 C -0.024 4.024 9 H 0.126 0.874 10 C -0.079 4.079 11 N -0.144 5.144 12 C -0.005 4.005 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.233 4.233 22 C -0.064 4.064 23 C -0.047 4.047 24 N -0.303 5.303 25 C 0.292 3.708 26 C -0.232 4.232 27 O -0.409 6.409 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.245 0.755 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.121 -25.955 -0.187 26.143 hybrid contribution -1.449 0.645 0.266 1.608 sum 1.672 -25.310 0.079 25.366 Atomic orbital electron populations 1.23014 0.78212 1.03572 1.01650 1.85948 1.21571 1.26900 1.89165 1.18296 0.89946 0.84126 0.97956 1.20336 0.99481 0.90481 1.19115 1.17576 0.90923 0.85782 0.91510 1.44959 1.07953 1.02997 1.81212 1.21578 0.95095 0.80119 1.02747 1.19482 0.95216 0.99344 0.88360 0.87438 1.29219 0.92932 0.91267 0.94520 1.81139 1.10660 1.10619 1.11986 1.19157 0.95974 0.86240 0.99093 1.21053 0.92709 0.91535 1.51603 0.92564 1.24945 0.95327 0.98780 0.94822 1.69917 1.14518 1.18960 1.49325 0.86637 0.81593 0.80958 0.78786 1.20023 1.21109 1.20256 1.20594 0.91446 0.99061 1.12216 1.20996 1.01171 0.89203 0.95059 1.16806 0.86464 0.86958 1.14439 1.43283 1.14172 1.11412 1.61402 1.20902 0.81902 0.90542 0.77440 1.21904 1.00648 0.96045 1.04555 1.90703 1.72995 1.34876 1.42340 0.92545 0.92598 0.88490 0.85431 0.76785 0.91413 0.89905 0.95277 0.93902 0.92594 0.85117 0.83289 0.75487 0.89258 0.88724 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.22 9.90 -19.62 -0.19 -3.41 16 3 C 0.14 1.72 6.70 -39.10 -0.26 1.46 16 4 C -0.27 -3.25 8.88 -39.27 -0.35 -3.60 16 5 C 0.25 3.28 6.65 -83.72 -0.56 2.73 16 6 N -0.74 -9.63 5.53 -58.60 -0.32 -9.95 16 7 C 0.13 1.83 4.27 -4.05 -0.02 1.81 16 8 C 0.00 -0.03 2.26 -93.41 -0.21 -0.24 16 9 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 10 C 0.24 4.60 13.46 -20.69 -0.28 4.32 16 11 N -0.47 -9.92 18.55 42.24 0.78 -9.14 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 13 C -0.53 -13.72 8.60 -34.44 -0.30 -14.02 16 14 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.21 -2.86 9.31 -39.37 -0.37 -3.22 16 22 C -0.04 -0.60 8.71 -39.44 -0.34 -0.94 16 23 C 0.05 0.61 6.45 -83.39 -0.54 0.07 16 24 N -0.66 -6.47 5.29 -9.69 -0.05 -6.52 16 25 C 0.50 5.14 7.75 -10.99 -0.09 5.06 16 26 C -0.17 -0.92 10.32 36.00 0.37 -0.54 16 27 O -0.53 -7.70 14.25 5.54 0.08 -7.62 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 32 H 0.40 4.79 8.23 -40.82 -0.34 4.45 16 33 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 34 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 1.70 6.72 -52.49 -0.35 1.35 16 39 H 0.15 2.12 5.78 -52.48 -0.30 1.82 16 40 H 0.41 2.91 8.34 -40.82 -0.34 2.57 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -32.91 370.19 -6.35 -39.26 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.78 Total: 3.83 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.16 Total: -3.66 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 1.14 Total: -49.92 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.12 Total: -11.03 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.91 -6.35 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.365 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds