Wall clock time and date at job start Tue Mar 31 2020 11:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99857 * 2 1 4 4 C 1.38490 * 120.04902 * 0.02562 * 3 2 1 5 5 C 1.38830 * 119.94540 * 179.97438 * 4 3 2 6 6 N 1.39880 * 119.98844 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00626 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47266 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47468 * 55.00308 * 8 7 6 10 10 C 1.47198 * 109.47154 * 294.99886 * 8 7 6 11 11 N 7.72018 * 74.99071 * 342.60383 * 2 1 3 12 12 C 1.53003 * 109.46909 * 175.00247 * 8 7 6 13 13 C 1.50709 * 109.46932 * 184.99876 * 12 8 7 14 14 H 1.07996 * 119.99596 * 0.02562 * 13 12 8 15 15 C 1.37875 * 119.99778 * 179.71937 * 13 12 8 16 16 N 1.31509 * 120.00212 * 0.28402 * 15 13 12 17 17 Si 1.86798 * 119.99702 * 180.27695 * 15 13 12 18 18 H 1.48498 * 109.47503 * 60.00648 * 17 15 13 19 19 H 1.48510 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47107 * 299.99968 * 17 15 13 21 21 C 1.38902 * 120.03395 * 0.24882 * 5 4 3 22 22 C 1.38147 * 120.08462 * 359.49085 * 21 5 4 23 23 C 1.38707 * 120.05512 * 0.51084 * 22 21 5 24 24 N 1.40350 * 120.01621 * 179.72164 * 23 22 21 25 25 C 1.34779 * 119.99985 * 24.81700 * 24 23 22 26 26 C 1.50693 * 120.00177 * 185.53174 * 25 24 23 27 27 O 1.21302 * 119.99731 * 5.52794 * 25 24 23 28 28 H 1.09004 * 109.47327 * 300.00272 * 1 2 3 29 29 H 1.09003 * 109.46946 * 59.99874 * 1 2 3 30 30 H 1.08994 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02636 * 359.97438 * 4 3 2 32 32 H 0.97005 * 119.99366 * 0.02562 * 6 5 4 33 33 H 1.09006 * 109.46988 * 60.00143 * 7 6 5 34 34 H 1.09002 * 109.47030 * 300.00794 * 7 6 5 35 35 H 1.08992 * 109.47532 * 65.00233 * 12 8 7 36 36 H 1.08998 * 109.47317 * 304.99427 * 12 8 7 37 37 H 0.97000 * 120.00094 * 179.97438 * 16 15 13 38 38 H 1.07997 * 119.96207 * 179.72621 * 21 5 4 39 39 H 1.08004 * 119.97333 * 180.25656 * 22 21 5 40 40 H 0.96997 * 120.00049 * 204.81156 * 24 23 22 41 41 H 1.09000 * 109.47484 * 59.99380 * 26 25 24 42 42 H 1.08998 * 109.47236 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47088 * 299.99721 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2929 2.3736 0.0005 5 6 1.9254 3.6094 0.0011 6 7 1.1654 4.7838 0.0011 7 6 1.8324 6.0881 0.0022 8 6 0.7804 7.1989 0.0026 9 1 0.1023 7.0569 0.8441 10 6 0.0176 7.1527 -1.2555 11 7 -0.5703 7.1157 -2.2294 12 6 1.4731 8.5572 0.1294 13 6 0.4337 9.6415 0.2533 14 1 -0.6158 9.3871 0.2431 15 6 0.8229 10.9575 0.3861 16 7 2.1009 11.2672 0.3990 17 14 -0.4653 12.3006 0.5474 18 1 -1.2950 12.0486 1.7529 19 1 0.2070 13.6186 0.6754 20 1 -1.3320 12.3026 -0.6585 21 6 3.3126 3.6805 -0.0041 22 6 4.0654 2.5221 0.0007 23 6 3.4372 1.2854 0.0002 24 7 4.2028 0.1091 -0.0008 25 6 5.4585 0.1219 0.4888 26 6 6.3242 -1.1063 0.3749 27 8 5.8918 1.1221 1.0210 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2144 2.3184 0.0005 32 1 0.1966 4.7344 0.0011 33 1 2.4560 6.1780 -0.8873 34 1 2.4548 6.1771 0.8926 35 1 2.0830 8.7381 -0.7555 36 1 2.1082 8.5599 1.0153 37 1 2.3747 12.1931 0.4921 38 1 3.8034 4.6425 -0.0082 39 1 5.1439 2.5795 0.0009 40 1 3.8282 -0.7131 -0.3537 41 1 6.4540 -1.3632 -0.6764 42 1 7.2977 -0.9074 0.8229 43 1 5.8471 -1.9366 0.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554487745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:11 Heat of formation + Delta-G solvation = -47.723041 kcal Electronic energy + Delta-G solvation = -25169.958029 eV Core-core repulsion = 21407.428539 eV Total energy + Delta-G solvation = -3762.529490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69931 -40.27071 -39.32183 -38.12420 -36.53576 -35.67481 -34.84482 -33.26460 -31.29953 -30.97848 -29.38857 -28.34941 -27.25573 -25.18052 -24.02647 -23.47527 -22.36003 -21.35066 -19.45792 -18.75275 -18.39982 -18.16214 -17.92381 -17.24548 -16.75368 -16.63305 -16.30416 -16.13096 -15.89483 -15.31635 -15.18683 -14.78313 -14.54384 -14.49063 -14.27417 -14.10241 -13.86017 -13.67873 -13.55049 -13.22954 -13.19029 -12.99869 -12.92240 -12.61302 -12.47633 -12.37743 -12.31684 -12.17589 -11.97301 -11.64214 -11.49730 -11.23934 -10.78345 -10.56047 -10.08591 -9.35602 -8.20428 -8.01007 -6.29048 0.47580 0.52808 1.41125 1.42511 1.49376 1.71994 1.87603 1.90413 2.20009 2.30205 2.40634 2.54433 2.93204 3.12241 3.17880 3.85480 3.92318 4.00939 4.25292 4.25901 4.31467 4.43295 4.44563 4.51673 4.61487 4.68316 4.70776 4.74337 4.78947 4.84350 4.88268 4.96039 5.15561 5.27254 5.39677 5.45170 5.58028 5.59259 5.76514 5.78629 6.14280 6.26079 6.44057 6.60111 6.69312 6.80985 6.86426 7.27375 7.39738 8.90275 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.002451 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.118139 B =11422.154993 C =12524.136691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.324 6.324 3 C 0.146 3.854 4 C -0.269 4.269 5 C 0.238 3.762 6 N -0.740 5.740 7 C 0.142 3.858 8 C 0.013 3.987 9 H 0.131 0.869 10 C 0.250 3.750 11 N -0.499 5.499 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.011 3.989 16 N -0.923 5.923 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.281 1.281 21 C -0.224 4.224 22 C -0.058 4.058 23 C 0.039 3.961 24 N -0.650 5.650 25 C 0.497 3.503 26 C -0.161 4.161 27 O -0.582 6.582 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.004 0.996 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.424 0.576 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -28.940 1.266 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.237 6.237 3 C 0.097 3.903 4 C -0.292 4.292 5 C 0.132 3.868 6 N -0.369 5.369 7 C 0.016 3.984 8 C -0.009 4.009 9 H 0.149 0.851 10 C -0.066 4.066 11 N -0.177 5.177 12 C -0.001 4.001 13 C -0.578 4.578 14 H 0.075 0.925 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.774 3.226 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.206 1.206 21 C -0.247 4.247 22 C -0.079 4.079 23 C -0.057 4.057 24 N -0.296 5.296 25 C 0.287 3.713 26 C -0.220 4.220 27 O -0.462 6.462 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.239 0.761 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.262 0.738 41 H 0.132 0.868 42 H 0.110 0.890 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.841 -28.220 0.171 28.280 hybrid contribution -1.077 1.219 0.136 1.632 sum 0.764 -27.001 0.307 27.013 Atomic orbital electron populations 1.23311 0.76392 1.05564 1.02026 1.85954 1.23353 1.25682 1.88748 1.18328 0.89839 0.84899 0.97191 1.20554 1.00541 0.89979 1.18171 1.17627 0.90728 0.86208 0.92199 1.44749 1.08133 1.02331 1.81703 1.21349 0.94019 0.79905 1.03101 1.19354 0.95650 0.97700 0.88150 0.85101 1.29580 0.92240 0.90328 0.94486 1.81144 1.11950 1.11591 1.12977 1.18975 0.95205 0.88199 0.97708 1.21503 0.93514 0.92545 1.50280 0.92459 1.25714 0.96954 1.01121 0.95015 1.70021 1.16101 1.19291 1.50824 0.85748 0.79410 0.78565 0.78842 1.18707 1.20929 1.20646 1.20650 0.91977 0.99071 1.12992 1.20959 1.00726 0.90050 0.96181 1.16979 0.87323 0.87541 1.13874 1.43316 1.14058 1.11172 1.61009 1.21850 0.81990 0.91345 0.76091 1.21922 0.99478 0.94127 1.06504 1.90684 1.73857 1.37096 1.44587 0.92140 0.92187 0.85818 0.83499 0.76063 0.92035 0.88814 0.97736 0.94200 0.92684 0.85343 0.84528 0.73824 0.86826 0.88960 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.72 9.90 -93.13 -0.92 -6.64 16 3 C 0.15 3.27 6.70 22.58 0.15 3.42 16 4 C -0.27 -6.05 8.88 22.47 0.20 -5.85 16 5 C 0.24 6.10 6.65 38.16 0.25 6.36 16 6 N -0.74 -18.23 5.53 -339.32 -1.88 -20.11 16 7 C 0.14 3.90 4.27 86.38 0.37 4.27 16 8 C 0.01 0.44 2.26 -12.60 -0.03 0.41 16 9 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 10 C 0.25 9.47 13.46 89.42 1.20 10.67 16 11 N -0.50 -20.91 18.55 20.03 0.37 -20.54 16 12 C 0.04 1.68 4.42 29.85 0.13 1.81 16 13 C -0.54 -27.74 8.60 25.60 0.22 -27.52 16 14 H 0.06 2.87 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.60 5.46 84.65 0.46 1.07 16 16 N -0.92 -52.50 13.29 21.45 0.28 -52.21 16 17 Si 0.95 42.77 29.54 68.60 2.03 44.79 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.22 -6.18 9.31 22.41 0.21 -5.97 16 22 C -0.06 -1.64 8.71 22.36 0.19 -1.45 16 23 C 0.04 0.95 6.45 38.14 0.25 1.20 16 24 N -0.65 -12.10 5.29 -302.96 -1.60 -13.71 16 25 C 0.50 9.82 7.75 87.65 0.68 10.50 16 26 C -0.16 -1.37 10.32 71.23 0.74 -0.63 16 27 O -0.58 -17.28 14.25 -3.10 -0.04 -17.33 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.15 2.64 6.29 -2.91 -0.02 2.62 16 32 H 0.40 8.96 8.23 -92.70 -0.76 8.20 16 33 H 0.06 1.78 7.93 -2.38 -0.02 1.77 16 34 H 0.09 2.42 7.96 -2.39 -0.02 2.40 16 35 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.13 3.46 6.72 -2.91 -0.02 3.44 16 39 H 0.14 4.14 5.78 -2.91 -0.02 4.13 16 40 H 0.42 5.20 8.34 -92.71 -0.77 4.43 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -71.70 370.19 3.90 -67.79 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.47 Total: 18.32 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 6.14 Total: -0.37 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -2.82 Total: -106.57 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.97 Total: -23.97 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.70 3.90 -67.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.071 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds