Wall clock time and date at job start Tue Mar 31 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99847 * 2 1 4 4 C 1.52993 * 109.47136 * 180.02562 * 3 2 1 5 5 S 1.81398 * 115.55173 * 40.73454 * 4 3 2 6 6 O 1.42095 * 110.54045 * 50.35344 * 5 4 3 7 7 O 1.42101 * 110.54340 * 187.10197 * 5 4 3 8 8 N 1.65597 * 104.44994 * 298.72738 * 5 4 3 9 9 C 1.46931 * 120.63169 * 275.15386 * 8 5 4 10 10 C 1.52760 * 109.00909 * 233.58572 * 9 8 5 11 11 C 1.53042 * 109.38000 * 305.58748 * 10 9 8 12 12 C 1.53007 * 109.45884 * 181.26185 * 11 10 9 13 13 C 1.50696 * 109.47055 * 64.92921 * 12 11 10 14 14 H 1.08007 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00183 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00044 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46998 * 90.00078 * 17 15 13 19 19 H 1.48500 * 109.47158 * 209.99833 * 17 15 13 20 20 H 1.48496 * 109.47120 * 329.99945 * 17 15 13 21 21 C 1.53034 * 109.54222 * 61.24245 * 11 10 9 22 22 C 1.46929 * 120.63275 * 95.43399 * 8 5 4 23 23 C 1.53011 * 117.49754 * 255.02815 * 4 3 2 24 24 C 1.53004 * 60.00024 * 252.50943 * 23 4 3 25 25 H 1.09009 * 109.46640 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47149 * 299.99397 * 1 2 3 27 27 H 1.08998 * 109.47458 * 60.00150 * 1 2 3 28 28 H 1.09006 * 109.46666 * 60.00185 * 3 2 1 29 29 H 1.09000 * 109.47512 * 300.00576 * 3 2 1 30 30 H 1.08997 * 109.58380 * 353.41798 * 9 8 5 31 31 H 1.09002 * 109.58679 * 113.84513 * 9 8 5 32 32 H 1.09002 * 109.56395 * 185.55331 * 10 9 8 33 33 H 1.09000 * 109.36049 * 65.49652 * 10 9 8 34 34 H 1.09003 * 109.46055 * 301.21666 * 11 10 9 35 35 H 1.08998 * 109.46838 * 184.92993 * 12 11 10 36 36 H 1.08996 * 109.46685 * 304.93241 * 12 11 10 37 37 H 0.97004 * 120.00836 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.50219 * 178.68532 * 21 11 10 39 39 H 1.08997 * 109.49769 * 58.58159 * 21 11 10 40 40 H 1.08996 * 109.58771 * 246.15655 * 22 8 5 41 41 H 1.09001 * 109.58098 * 6.58212 * 22 8 5 42 42 H 1.08996 * 117.49739 * 359.97438 * 23 4 3 43 43 H 1.08997 * 117.49759 * 145.02046 * 23 4 3 44 44 H 1.08995 * 117.49977 * 252.51359 * 24 23 4 45 45 H 1.08998 * 117.49862 * 107.48488 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2170 -0.1131 -1.0691 6 8 3.6713 -0.0192 -2.3777 7 8 5.6178 -0.2407 -0.8670 8 7 3.5872 -1.5198 -0.4638 9 6 4.2379 -2.2095 0.6586 10 6 4.4992 -3.6624 0.2657 11 6 3.1900 -4.3073 -0.1948 12 6 3.4435 -5.7716 -0.5589 13 6 3.8521 -6.5328 0.6759 14 1 3.9234 -6.0232 1.6255 15 6 4.1350 -7.8797 0.5934 16 7 4.0487 -8.5001 -0.5630 17 14 4.6408 -8.8234 2.1241 18 1 3.4317 -9.3714 2.7898 19 1 5.5439 -9.9386 1.7423 20 1 5.3486 -7.9104 3.0571 21 6 2.6557 -3.5625 -1.4202 22 6 2.3703 -2.1054 -1.0428 23 6 4.2679 1.4783 1.3103 24 6 4.3462 2.4734 0.1508 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 5.1835 -1.7192 0.8899 31 1 3.5862 -2.1816 1.5319 32 1 4.8912 -4.2078 1.1242 33 1 5.2249 -3.6920 -0.5470 34 1 2.4567 -4.2553 0.6101 35 1 2.5324 -6.2070 -0.9692 36 1 4.2398 -5.8288 -1.3010 37 1 4.2473 -9.4478 -0.6211 38 1 1.7356 -4.0366 -1.7617 39 1 3.3988 -3.5930 -2.2171 40 1 1.5633 -2.0689 -0.3111 41 1 2.0842 -1.5465 -1.9338 42 1 3.6631 1.7578 2.1730 43 1 5.1595 0.8914 1.5309 44 1 5.2893 2.5412 -0.3914 45 1 3.7929 3.4072 0.2507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564905674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:40 Heat of formation + Delta-G solvation = -94.745968 kcal Electronic energy + Delta-G solvation = -26560.900570 eV Core-core repulsion = 22899.483213 eV Total energy + Delta-G solvation = -3661.417357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.87638 -38.08930 -37.38160 -36.59913 -35.82539 -33.77046 -31.82166 -30.52120 -28.67856 -27.50685 -25.87076 -24.08196 -23.05202 -22.68020 -22.31554 -21.22913 -19.41530 -18.22024 -17.57223 -17.29812 -16.34300 -16.30552 -16.01698 -15.62190 -15.50846 -14.48178 -14.40990 -14.06635 -13.86359 -13.50162 -13.20312 -13.09094 -12.99539 -12.94712 -12.32653 -12.09838 -11.98702 -11.90157 -11.84036 -11.60566 -11.49861 -11.40451 -11.07699 -11.01722 -10.76324 -10.66579 -10.54634 -10.44574 -10.24946 -9.95597 -9.90952 -9.48638 -9.16349 -8.86189 -8.37772 -8.27435 -5.92567 -3.93862 0.37251 2.52668 3.08257 3.35516 3.42083 3.42196 3.44824 3.82374 4.02817 4.32738 4.39595 4.51383 4.67283 4.90951 5.02478 5.05930 5.11693 5.14650 5.16777 5.21064 5.37216 5.42694 5.49876 5.54553 5.58660 5.69445 5.77291 5.99782 6.01236 6.07683 6.27948 6.39746 6.59371 6.66156 6.78363 6.88365 6.93541 7.18098 7.20333 7.27858 7.76585 7.93637 8.08829 8.51619 9.12959 9.69332 11.18809 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.003699 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.290069 B = 7567.133921 C = 7837.378097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.119 3.881 4 C -0.657 4.657 5 S 2.648 3.352 6 O -0.954 6.954 7 O -0.957 6.957 8 N -0.971 5.971 9 C 0.123 3.877 10 C -0.115 4.115 11 C -0.077 4.077 12 C 0.026 3.974 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.130 4.130 22 C 0.138 3.862 23 C -0.114 4.114 24 C -0.123 4.123 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 23.912 3.009 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.042 3.958 4 C -0.743 4.743 5 S 2.738 3.262 6 O -0.945 6.945 7 O -0.947 6.947 8 N -0.810 5.810 9 C -0.002 4.002 10 C -0.154 4.154 11 C -0.095 4.095 12 C -0.011 4.011 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.169 4.169 22 C 0.014 3.986 23 C -0.152 4.152 24 C -0.162 4.162 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.601 23.695 2.210 24.238 hybrid contribution -0.448 -0.193 1.365 1.449 sum -5.048 23.501 3.575 24.302 Atomic orbital electron populations 1.22757 0.80241 1.03591 0.99972 1.88102 1.20412 1.25944 1.95405 1.21476 0.86997 0.86131 1.01210 1.32323 1.04162 1.19071 1.18780 1.03795 0.73825 0.74130 0.74429 1.93536 1.80464 1.86064 1.34410 1.93580 1.29157 1.85090 1.86877 1.57207 1.39345 1.37118 1.47307 1.21434 0.96174 0.94837 0.87756 1.21760 0.98843 0.92516 1.02285 1.21122 0.95452 0.97440 0.95506 1.19147 0.96827 0.88498 0.96662 1.21264 1.45277 0.93696 0.94891 0.92615 1.25021 0.95882 0.97927 0.95691 1.69966 1.49768 1.09990 1.23885 0.86657 0.78392 0.79720 0.83572 1.20852 1.21382 1.19922 1.22052 1.01260 0.94157 0.99466 1.21413 0.85461 0.94035 0.97719 1.22917 1.01071 1.01069 0.90129 1.22862 0.99772 0.91634 1.01912 0.88768 0.94019 0.93766 0.92297 0.91966 0.90563 0.91970 0.90032 0.92309 0.92494 0.96716 0.96631 0.93144 0.91521 0.92288 0.91159 0.90131 0.87090 0.86693 0.87005 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.68 101.05 1.08 1.32 16 2 O -0.38 -3.96 5.86 -35.23 -0.21 -4.17 16 3 C 0.12 1.07 6.02 37.15 0.22 1.29 16 4 C -0.66 -6.59 2.64 -90.61 -0.24 -6.82 16 5 S 2.65 38.47 5.19 -107.50 -0.56 37.91 16 6 O -0.95 -16.36 16.44 -57.54 -0.95 -17.30 16 7 O -0.96 -16.04 16.51 -57.54 -0.95 -16.99 16 8 N -0.97 -14.64 2.59 -113.76 -0.29 -14.93 16 9 C 0.12 1.87 6.38 -3.93 -0.03 1.85 16 10 C -0.11 -2.18 5.17 -26.83 -0.14 -2.32 16 11 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 12 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 13 C -0.51 -14.25 8.39 -34.44 -0.29 -14.54 16 14 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.13 -2.31 5.36 -26.61 -0.14 -2.46 16 22 C 0.14 2.08 4.47 -3.71 -0.02 2.07 16 23 C -0.11 -0.91 9.83 -26.72 -0.26 -1.17 16 24 C -0.12 -0.92 10.01 -26.72 -0.27 -1.19 16 25 H 0.09 0.70 7.73 -51.92 -0.40 0.30 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.42 7.96 -51.93 -0.41 0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.07 7.01 -51.93 -0.36 0.71 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.61 6.91 -51.93 -0.36 1.25 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.95 5.96 -51.93 -0.31 0.64 16 41 H 0.08 1.19 6.71 -51.93 -0.35 0.85 16 42 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.11 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -34.29 363.17 -9.87 -44.16 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.61 Total: -2.71 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -0.49 Total: -21.69 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.44 Total: -41.34 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -2.10 Total: -38.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.56 Total: 37.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.29 -9.87 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564905674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.588 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds