Wall clock time and date at job start Tue Mar 31 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99847 * 2 1 4 4 C 1.52993 * 109.47136 * 180.02562 * 3 2 1 5 5 S 1.81398 * 115.55173 * 40.73454 * 4 3 2 6 6 O 1.42095 * 110.54045 * 50.35344 * 5 4 3 7 7 O 1.42101 * 110.54340 * 187.10197 * 5 4 3 8 8 N 1.65597 * 104.44994 * 298.72738 * 5 4 3 9 9 C 1.46931 * 120.63169 * 275.15386 * 8 5 4 10 10 C 1.52760 * 109.00909 * 233.58572 * 9 8 5 11 11 C 1.53042 * 109.38000 * 305.58748 * 10 9 8 12 12 C 1.53007 * 109.45884 * 181.26185 * 11 10 9 13 13 C 1.50696 * 109.47055 * 64.92921 * 12 11 10 14 14 H 1.08007 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00183 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00044 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46998 * 90.00078 * 17 15 13 19 19 H 1.48500 * 109.47158 * 209.99833 * 17 15 13 20 20 H 1.48496 * 109.47120 * 329.99945 * 17 15 13 21 21 C 1.53034 * 109.54222 * 61.24245 * 11 10 9 22 22 C 1.46929 * 120.63275 * 95.43399 * 8 5 4 23 23 C 1.53011 * 117.49754 * 255.02815 * 4 3 2 24 24 C 1.53004 * 60.00024 * 252.50943 * 23 4 3 25 25 H 1.09009 * 109.46640 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47149 * 299.99397 * 1 2 3 27 27 H 1.08998 * 109.47458 * 60.00150 * 1 2 3 28 28 H 1.09006 * 109.46666 * 60.00185 * 3 2 1 29 29 H 1.09000 * 109.47512 * 300.00576 * 3 2 1 30 30 H 1.08997 * 109.58380 * 353.41798 * 9 8 5 31 31 H 1.09002 * 109.58679 * 113.84513 * 9 8 5 32 32 H 1.09002 * 109.56395 * 185.55331 * 10 9 8 33 33 H 1.09000 * 109.36049 * 65.49652 * 10 9 8 34 34 H 1.09003 * 109.46055 * 301.21666 * 11 10 9 35 35 H 1.08998 * 109.46838 * 184.92993 * 12 11 10 36 36 H 1.08996 * 109.46685 * 304.93241 * 12 11 10 37 37 H 0.97004 * 120.00836 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.50219 * 178.68532 * 21 11 10 39 39 H 1.08997 * 109.49769 * 58.58159 * 21 11 10 40 40 H 1.08996 * 109.58771 * 246.15655 * 22 8 5 41 41 H 1.09001 * 109.58098 * 6.58212 * 22 8 5 42 42 H 1.08996 * 117.49739 * 359.97438 * 23 4 3 43 43 H 1.08997 * 117.49759 * 145.02046 * 23 4 3 44 44 H 1.08995 * 117.49977 * 252.51359 * 24 23 4 45 45 H 1.08998 * 117.49862 * 107.48488 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2170 -0.1131 -1.0691 6 8 3.6713 -0.0192 -2.3777 7 8 5.6178 -0.2407 -0.8670 8 7 3.5872 -1.5198 -0.4638 9 6 4.2379 -2.2095 0.6586 10 6 4.4992 -3.6624 0.2657 11 6 3.1900 -4.3073 -0.1948 12 6 3.4435 -5.7716 -0.5589 13 6 3.8521 -6.5328 0.6759 14 1 3.9234 -6.0232 1.6255 15 6 4.1350 -7.8797 0.5934 16 7 4.0487 -8.5001 -0.5630 17 14 4.6408 -8.8234 2.1241 18 1 3.4317 -9.3714 2.7898 19 1 5.5439 -9.9386 1.7423 20 1 5.3486 -7.9104 3.0571 21 6 2.6557 -3.5625 -1.4202 22 6 2.3703 -2.1054 -1.0428 23 6 4.2679 1.4783 1.3103 24 6 4.3462 2.4734 0.1508 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 5.1835 -1.7192 0.8899 31 1 3.5862 -2.1816 1.5319 32 1 4.8912 -4.2078 1.1242 33 1 5.2249 -3.6920 -0.5470 34 1 2.4567 -4.2553 0.6101 35 1 2.5324 -6.2070 -0.9692 36 1 4.2398 -5.8288 -1.3010 37 1 4.2473 -9.4478 -0.6211 38 1 1.7356 -4.0366 -1.7617 39 1 3.3988 -3.5930 -2.2171 40 1 1.5633 -2.0689 -0.3111 41 1 2.0842 -1.5465 -1.9338 42 1 3.6631 1.7578 2.1730 43 1 5.1595 0.8914 1.5309 44 1 5.2893 2.5412 -0.3914 45 1 3.7929 3.4072 0.2507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564905674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:39 Heat of formation + Delta-G solvation = -117.984290 kcal Electronic energy + Delta-G solvation = -26561.908259 eV Core-core repulsion = 22899.483213 eV Total energy + Delta-G solvation = -3662.425046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.67800 -39.36784 -38.44788 -37.40955 -37.03768 -35.60575 -33.70542 -31.89252 -29.52404 -29.15713 -26.45702 -25.90489 -24.12295 -23.58280 -23.19008 -22.86604 -20.95109 -19.39402 -18.65458 -18.36525 -18.22160 -17.11007 -16.97021 -16.50901 -16.44600 -16.34902 -15.32372 -15.26471 -15.06287 -14.98651 -14.70839 -14.52984 -14.00149 -13.89278 -13.58988 -13.46858 -13.27435 -13.24653 -13.04120 -12.77971 -12.56940 -12.53559 -12.49849 -12.39732 -12.12810 -12.06668 -11.90534 -11.72989 -11.59528 -11.38557 -11.21364 -10.95098 -10.76174 -10.51179 -10.49012 -9.66231 -8.13560 -6.23145 -0.70039 1.42157 1.43763 1.54443 1.59181 2.25385 2.44903 2.78946 2.91408 3.09492 3.19790 3.57499 3.69296 3.82628 3.91883 4.13905 4.16745 4.38059 4.41458 4.48846 4.52099 4.55702 4.60416 4.61442 4.66995 4.69147 4.70769 4.85338 4.92808 4.96677 5.02788 5.03849 5.08939 5.21935 5.37067 5.42960 5.45507 5.50020 5.62536 5.81226 5.89823 5.94670 6.19625 6.33182 6.93684 7.45287 8.98682 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.003699 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.290069 B = 7567.133921 C = 7837.378097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.117 3.883 4 C -0.652 4.652 5 S 2.642 3.358 6 O -0.992 6.992 7 O -0.991 6.991 8 N -0.980 5.980 9 C 0.132 3.868 10 C -0.114 4.114 11 C -0.067 4.067 12 C 0.030 3.970 13 C -0.525 4.525 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.939 5.939 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.260 1.260 21 C -0.130 4.130 22 C 0.150 3.850 23 C -0.107 4.107 24 C -0.113 4.113 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.067 0.933 35 H -0.012 1.012 36 H -0.021 1.021 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 26.620 5.964 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.039 3.961 4 C -0.745 4.745 5 S 2.739 3.261 6 O -0.982 6.982 7 O -0.982 6.982 8 N -0.818 5.818 9 C 0.007 3.993 10 C -0.153 4.153 11 C -0.085 4.085 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.184 1.184 21 C -0.169 4.169 22 C 0.025 3.975 23 C -0.145 4.145 24 C -0.151 4.151 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.006 0.994 36 H -0.003 1.003 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.547 26.364 5.130 27.426 hybrid contribution -0.145 -0.965 0.406 1.057 sum -5.692 25.399 5.536 26.611 Atomic orbital electron populations 1.22888 0.79084 1.03936 1.01118 1.88037 1.21754 1.27012 1.95633 1.21648 0.85679 0.85907 1.02819 1.31818 1.05201 1.18275 1.19176 1.03593 0.73089 0.74976 0.74450 1.93485 1.80679 1.86782 1.37284 1.93532 1.31350 1.85951 1.87323 1.57138 1.39090 1.38332 1.47200 1.21340 0.97534 0.91958 0.88445 1.21691 0.97275 0.95473 1.00894 1.20958 0.96637 0.94152 0.96795 1.19060 0.94110 0.92260 0.95273 1.21681 1.44691 0.94194 0.95732 0.91461 1.25998 0.95901 0.99225 0.99088 1.70125 1.51068 1.10360 1.26484 0.85484 0.78249 0.78106 0.79430 1.19790 1.21408 1.18405 1.22030 1.00673 0.96544 0.97693 1.21301 0.86156 0.91459 0.98545 1.23168 1.00646 1.00407 0.90243 1.23196 0.99388 0.91817 1.00741 0.88922 0.92314 0.93182 0.89344 0.91587 0.89396 0.89380 0.91022 0.94855 0.91425 0.99396 1.00309 0.93104 0.90997 0.94595 0.88820 0.89942 0.84328 0.87252 0.87162 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.68 113.37 1.21 1.53 16 2 O -0.40 -7.24 5.86 -148.98 -0.87 -8.11 16 3 C 0.12 1.65 6.02 71.98 0.43 2.08 16 4 C -0.65 -11.05 2.64 -10.79 -0.03 -11.08 16 5 S 2.64 75.21 5.19 -56.49 -0.29 74.92 16 6 O -0.99 -34.37 16.44 -127.65 -2.10 -36.46 16 7 O -0.99 -33.39 16.51 -127.65 -2.11 -35.50 16 8 N -0.98 -28.84 2.59 -513.83 -1.33 -30.17 16 9 C 0.13 3.88 6.38 86.22 0.55 4.43 16 10 C -0.11 -4.41 5.17 30.53 0.16 -4.26 16 11 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 12 C 0.03 1.63 4.45 29.85 0.13 1.76 16 13 C -0.52 -29.77 8.39 25.60 0.21 -29.56 16 14 H 0.07 3.58 7.06 -2.91 -0.02 3.56 16 15 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 16 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 17 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 C -0.13 -4.79 5.36 30.67 0.16 -4.62 16 22 C 0.15 4.44 4.47 86.36 0.39 4.82 16 23 C -0.11 -1.27 9.83 30.60 0.30 -0.97 16 24 C -0.11 -1.25 10.01 30.60 0.31 -0.94 16 25 H 0.09 1.17 7.73 -2.38 -0.02 1.15 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 0.77 7.96 -2.38 -0.02 0.75 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 2.38 7.01 -2.39 -0.02 2.36 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.87 6.91 -2.39 -0.02 2.85 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 2.36 5.96 -2.39 -0.01 2.34 16 41 H 0.08 2.43 6.71 -2.39 -0.02 2.42 16 42 H 0.14 0.94 8.09 -2.39 -0.02 0.92 16 43 H 0.11 1.47 8.04 -2.39 -0.02 1.45 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -77.76 363.17 0.84 -76.93 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.96 Total: 9.56 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 4.27 Total: -39.44 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.04 Total: -88.65 kcal Atomic # 8 Polarization: -75.00 SS G_CDS: -5.08 Total: -80.08 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 75.21 SS G_CDS: -0.29 Total: 74.92 kcal Total: -77.76 0.84 -76.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564905674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.057 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds