Wall clock time and date at job start Tue Mar 31 2020 11:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99713 * 2 1 4 4 C 1.38565 * 120.07637 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99815 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47351 * 89.99936 * 7 6 5 9 9 C 1.39583 * 120.00064 * 180.02562 * 8 7 6 10 10 C 1.35410 * 126.62965 * 359.68043 * 9 8 7 11 11 N 1.34236 * 108.10584 * 179.87179 * 10 9 8 12 12 C 1.30391 * 109.40301 * 0.40960 * 11 10 9 13 13 N 1.36191 * 108.67916 * 359.74560 * 12 11 10 14 14 H 0.97000 * 126.45942 * 180.02562 * 13 12 11 15 15 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 16 16 C 1.38565 * 119.99552 * 0.50974 * 15 6 5 17 17 O 1.35995 * 120.07439 * 179.74455 * 16 15 6 18 18 C 1.42903 * 116.99587 * 359.72507 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46794 * 90.00022 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00005 * 24 22 20 27 27 H 1.48501 * 109.46982 * 330.00118 * 24 22 20 28 28 H 1.09002 * 109.46922 * 59.99615 * 1 2 3 29 29 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47392 * 300.00389 * 1 2 3 31 31 H 1.07997 * 119.99773 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47412 * 210.00067 * 7 6 5 34 34 H 1.09000 * 109.47112 * 329.99885 * 7 6 5 35 35 H 0.97001 * 119.99993 * 0.02562 * 8 7 6 36 36 H 1.08003 * 125.94779 * 0.02562 * 10 9 8 37 37 H 1.07992 * 125.65886 * 179.72972 * 12 11 10 38 38 H 1.07994 * 120.00428 * 180.27944 * 15 6 5 39 39 H 1.09002 * 109.47382 * 60.00075 * 18 17 16 40 40 H 1.09001 * 109.46938 * 300.00061 * 18 17 16 41 41 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 42 42 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 43 43 H 0.97000 * 119.99684 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9836 5.0244 0.0028 8 7 4.2037 5.4591 1.3843 9 6 4.8230 6.6835 1.6404 10 6 5.2768 7.5675 0.7204 11 7 5.8016 8.6165 1.3731 12 6 5.7024 8.4207 2.6584 13 7 5.0948 7.2205 2.8712 14 1 4.8924 6.8215 3.7318 15 6 4.0603 2.5234 0.0064 16 6 3.4359 1.2864 0.0001 17 8 4.1795 0.1477 -0.0004 18 6 5.6003 0.3007 -0.0003 19 6 6.2618 -1.0789 -0.0016 20 6 7.7602 -0.9175 -0.0008 21 1 8.1968 0.0702 0.0000 22 6 8.5734 -2.0309 -0.0012 23 7 9.8810 -1.8901 -0.0010 24 14 7.8180 -3.7394 -0.0019 25 1 7.6179 -4.1915 -1.4022 26 1 8.7267 -4.6827 0.6978 27 1 6.5088 -3.7020 0.6980 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2146 2.3197 0.0014 32 1 1.3341 4.5116 0.0019 33 1 4.9419 4.9469 -0.5108 34 1 3.3539 5.7509 -0.5108 35 1 3.9190 4.8961 2.1211 36 1 5.2233 7.4501 -0.3519 37 1 6.0455 9.0976 3.4267 38 1 5.1385 2.5840 0.0114 39 1 5.9065 0.8501 0.8900 40 1 5.9065 0.8510 -0.8900 41 1 5.9556 -1.6295 0.8880 42 1 5.9555 -1.6279 -0.8919 43 1 10.4531 -2.6734 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579773943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:02 Heat of formation + Delta-G solvation = 13.615800 kcal Electronic energy + Delta-G solvation = -25256.498208 eV Core-core repulsion = 21496.628570 eV Total energy + Delta-G solvation = -3759.869638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90889 -40.55401 -38.37729 -37.61985 -35.43410 -33.37133 -32.53518 -31.21075 -30.83862 -29.74368 -28.22251 -27.29927 -25.56508 -25.06644 -22.40709 -22.01119 -21.58181 -20.61025 -20.36304 -18.90417 -18.42566 -17.32536 -16.68317 -16.39105 -16.03954 -15.77795 -15.27809 -15.25561 -15.16663 -14.68352 -14.44574 -14.16566 -14.01193 -13.79693 -13.67851 -13.27325 -12.91836 -12.82009 -12.43271 -12.17245 -11.84149 -11.71414 -11.29438 -11.14265 -10.97533 -10.85588 -10.47239 -10.22392 -10.14308 -10.03296 -9.85267 -9.83836 -9.36390 -8.78509 -8.63740 -7.74292 -7.38801 -6.14892 -4.16025 1.10914 1.33763 2.14800 2.55370 3.17832 3.21422 3.27741 3.34883 3.40840 3.53062 3.60075 3.86767 4.37978 4.49051 4.64680 4.75437 4.84920 5.00677 5.01071 5.10310 5.18610 5.19265 5.26600 5.35022 5.41242 5.43822 5.50054 5.64114 5.67140 5.85396 5.87193 6.07508 6.12114 6.33740 6.37410 6.47989 6.61343 6.96725 6.96877 7.20978 7.23408 7.26325 7.51994 7.60887 7.86457 8.09890 8.36899 8.85571 9.45347 10.97553 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008858 B = 0.003347 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.156889 B = 8362.770256 C =11182.550560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.100 3.900 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.108 4.108 7 C 0.191 3.809 8 N -0.732 5.732 9 C 0.278 3.722 10 C -0.110 4.110 11 N -0.466 5.466 12 C 0.153 3.847 13 N -0.596 5.596 14 H 0.416 0.584 15 C -0.156 4.156 16 C 0.117 3.883 17 O -0.307 6.307 18 C 0.071 3.929 19 C -0.008 4.008 20 C -0.527 4.527 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.897 5.897 24 Si 0.880 3.120 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.164 0.836 37 H 0.206 0.794 38 H 0.141 0.859 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 14.591 4.134 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.054 3.946 4 C -0.197 4.197 5 C -0.126 4.126 6 C -0.109 4.109 7 C 0.067 3.933 8 N -0.370 5.370 9 C 0.064 3.936 10 C -0.260 4.260 11 N -0.184 5.184 12 C -0.129 4.129 13 N -0.210 5.210 14 H 0.253 0.747 15 C -0.176 4.176 16 C 0.069 3.931 17 O -0.221 6.221 18 C -0.003 4.003 19 C -0.045 4.045 20 C -0.565 4.565 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.707 3.293 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.187 1.187 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.181 0.819 37 H 0.223 0.777 38 H 0.159 0.841 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.936 14.834 3.463 24.303 hybrid contribution -0.882 -1.827 1.155 2.335 sum -19.818 13.007 4.618 24.151 Atomic orbital electron populations 1.23048 0.78962 1.03904 1.00918 1.86245 1.20649 1.25925 1.88753 1.18406 0.89439 0.85169 1.01599 1.20972 0.99710 0.91448 1.07585 1.20643 0.93522 0.96933 1.01477 1.19403 0.93344 0.93739 1.04450 1.20007 0.99728 0.91708 0.81832 1.43788 1.67967 1.17569 1.07656 1.18240 1.00072 0.89382 0.85951 1.21521 1.12608 0.93202 0.98651 1.70047 1.19110 1.25630 1.03620 1.24705 1.04760 0.88098 0.95379 1.43149 1.51056 1.19437 1.07311 0.74660 1.21130 1.00969 0.90445 1.05023 1.18393 0.88441 0.87012 0.99207 1.86248 1.20986 1.27399 1.87420 1.23111 0.74651 1.02138 1.00369 1.19569 0.95906 0.91076 0.97962 1.20835 0.87936 0.95296 1.52458 0.90752 1.24928 0.94657 0.99290 0.94082 1.69893 1.03066 1.30436 1.50120 0.86766 0.79701 0.84056 0.78819 1.20019 1.21185 1.18719 0.92838 0.88303 0.92932 0.84974 0.85771 0.91084 0.91246 0.76802 0.81890 0.77739 0.84135 0.92622 0.92481 0.95423 0.95777 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.40 10.28 -34.23 -0.35 -4.75 16 3 C 0.10 1.43 6.70 -39.12 -0.26 1.16 16 4 C -0.18 -1.93 9.04 -39.46 -0.36 -2.29 16 5 C -0.11 -1.06 9.69 -39.58 -0.38 -1.45 16 6 C -0.11 -1.19 5.25 -104.62 -0.55 -1.74 16 7 C 0.19 1.80 5.69 -5.20 -0.03 1.77 16 8 N -0.73 -6.91 5.74 -61.27 -0.35 -7.26 16 9 C 0.28 2.95 8.17 -151.71 -1.24 1.71 16 10 C -0.11 -1.36 11.19 -17.51 -0.20 -1.55 16 11 N -0.47 -6.06 11.24 -14.22 -0.16 -6.22 16 12 C 0.15 1.46 13.08 -89.41 -1.17 0.29 16 13 N -0.60 -5.08 6.21 -12.95 -0.08 -5.16 16 14 H 0.42 2.24 8.96 -40.82 -0.37 1.87 16 15 C -0.16 -2.15 8.69 -39.46 -0.34 -2.50 16 16 C 0.12 1.90 6.70 -39.12 -0.26 1.63 16 17 O -0.31 -6.04 9.92 -34.23 -0.34 -6.38 16 18 C 0.07 1.45 4.68 37.16 0.17 1.62 16 19 C -0.01 -0.19 4.41 -27.88 -0.12 -0.31 16 20 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 21 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 24 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 28 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.40 3.46 8.59 -40.82 -0.35 3.11 16 36 H 0.16 1.83 7.85 -52.48 -0.41 1.41 16 37 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.98 6.30 -52.49 -0.33 1.65 16 39 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 40 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 41 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 42 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -34.66 363.96 -9.71 -44.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.84 Total: 2.98 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -4.18 Total: -13.54 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.18 Total: -45.10 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.69 Total: -11.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.66 -9.71 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579773943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.993 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds