Wall clock time and date at job start Tue Mar 31 2020 11:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99713 * 2 1 4 4 C 1.38565 * 120.07637 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99815 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47351 * 89.99936 * 7 6 5 9 9 C 1.39583 * 120.00064 * 180.02562 * 8 7 6 10 10 C 1.35410 * 126.62965 * 359.68043 * 9 8 7 11 11 N 1.34236 * 108.10584 * 179.87179 * 10 9 8 12 12 C 1.30391 * 109.40301 * 0.40960 * 11 10 9 13 13 N 1.36191 * 108.67916 * 359.74560 * 12 11 10 14 14 H 0.97000 * 126.45942 * 180.02562 * 13 12 11 15 15 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 16 16 C 1.38565 * 119.99552 * 0.50974 * 15 6 5 17 17 O 1.35995 * 120.07439 * 179.74455 * 16 15 6 18 18 C 1.42903 * 116.99587 * 359.72507 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46794 * 90.00022 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00005 * 24 22 20 27 27 H 1.48501 * 109.46982 * 330.00118 * 24 22 20 28 28 H 1.09002 * 109.46922 * 59.99615 * 1 2 3 29 29 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47392 * 300.00389 * 1 2 3 31 31 H 1.07997 * 119.99773 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47412 * 210.00067 * 7 6 5 34 34 H 1.09000 * 109.47112 * 329.99885 * 7 6 5 35 35 H 0.97001 * 119.99993 * 0.02562 * 8 7 6 36 36 H 1.08003 * 125.94779 * 0.02562 * 10 9 8 37 37 H 1.07992 * 125.65886 * 179.72972 * 12 11 10 38 38 H 1.07994 * 120.00428 * 180.27944 * 15 6 5 39 39 H 1.09002 * 109.47382 * 60.00075 * 18 17 16 40 40 H 1.09001 * 109.46938 * 300.00061 * 18 17 16 41 41 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 42 42 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 43 43 H 0.97000 * 119.99684 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9836 5.0244 0.0028 8 7 4.2037 5.4591 1.3843 9 6 4.8230 6.6835 1.6404 10 6 5.2768 7.5675 0.7204 11 7 5.8016 8.6165 1.3731 12 6 5.7024 8.4207 2.6584 13 7 5.0948 7.2205 2.8712 14 1 4.8924 6.8215 3.7318 15 6 4.0603 2.5234 0.0064 16 6 3.4359 1.2864 0.0001 17 8 4.1795 0.1477 -0.0004 18 6 5.6003 0.3007 -0.0003 19 6 6.2618 -1.0789 -0.0016 20 6 7.7602 -0.9175 -0.0008 21 1 8.1968 0.0702 0.0000 22 6 8.5734 -2.0309 -0.0012 23 7 9.8810 -1.8901 -0.0010 24 14 7.8180 -3.7394 -0.0019 25 1 7.6179 -4.1915 -1.4022 26 1 8.7267 -4.6827 0.6978 27 1 6.5088 -3.7020 0.6980 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2146 2.3197 0.0014 32 1 1.3341 4.5116 0.0019 33 1 4.9419 4.9469 -0.5108 34 1 3.3539 5.7509 -0.5108 35 1 3.9190 4.8961 2.1211 36 1 5.2233 7.4501 -0.3519 37 1 6.0455 9.0976 3.4267 38 1 5.1385 2.5840 0.0114 39 1 5.9065 0.8501 0.8900 40 1 5.9065 0.8510 -0.8900 41 1 5.9556 -1.6295 0.8880 42 1 5.9555 -1.6279 -0.8919 43 1 10.4531 -2.6734 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579773943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:01 Heat of formation + Delta-G solvation = -8.540354 kcal Electronic energy + Delta-G solvation = -25257.458971 eV Core-core repulsion = 21496.628570 eV Total energy + Delta-G solvation = -3760.830401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68174 -41.59045 -39.52551 -38.64023 -36.30687 -35.41638 -33.34603 -32.91104 -31.81989 -30.95682 -29.04134 -28.07273 -27.19377 -26.06976 -23.75309 -22.88343 -22.52849 -22.03346 -21.31498 -19.74505 -19.50024 -18.98447 -17.86698 -17.62849 -17.21610 -16.68513 -16.39241 -16.33530 -16.04353 -16.03647 -15.67298 -15.25224 -15.03044 -14.76122 -14.58120 -14.48515 -14.30948 -14.07328 -13.74752 -13.22181 -13.14462 -12.97741 -12.62140 -12.41167 -12.19404 -11.98827 -11.94388 -11.82992 -11.60225 -11.46855 -11.27849 -10.97382 -10.83918 -10.61162 -9.75143 -8.82275 -8.37206 -8.18115 -6.44050 0.16467 0.35954 1.33933 1.35032 1.38628 1.48230 1.80488 2.28863 2.31046 2.34358 2.37171 2.64988 2.97686 3.11408 3.61077 3.79514 4.01267 4.09298 4.10284 4.18630 4.21013 4.33816 4.41865 4.42952 4.45749 4.58910 4.59673 4.65764 4.71816 4.75039 4.78341 4.91598 5.07086 5.11285 5.22962 5.26966 5.47358 5.53517 5.56441 5.71440 6.12357 6.17563 6.18195 6.57585 6.61367 6.64597 6.82375 7.21336 7.32756 8.78505 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008858 B = 0.003347 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.156889 B = 8362.770256 C =11182.550560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.089 3.911 4 C -0.167 4.167 5 C -0.088 4.088 6 C -0.103 4.103 7 C 0.195 3.805 8 N -0.727 5.727 9 C 0.275 3.725 10 C -0.140 4.140 11 N -0.512 5.512 12 C 0.164 3.836 13 N -0.586 5.586 14 H 0.432 0.568 15 C -0.160 4.160 16 C 0.069 3.931 17 O -0.330 6.330 18 C 0.088 3.912 19 C -0.004 4.004 20 C -0.537 4.537 21 H 0.042 0.958 22 C 0.015 3.985 23 N -0.941 5.941 24 Si 0.948 3.052 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.253 1.253 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.402 0.598 36 H 0.162 0.838 37 H 0.243 0.757 38 H 0.127 0.873 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.660 15.278 4.914 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.043 3.957 4 C -0.186 4.186 5 C -0.106 4.106 6 C -0.104 4.104 7 C 0.071 3.929 8 N -0.365 5.365 9 C 0.060 3.940 10 C -0.289 4.289 11 N -0.231 5.231 12 C -0.119 4.119 13 N -0.201 5.201 14 H 0.272 0.728 15 C -0.179 4.179 16 C 0.024 3.976 17 O -0.245 6.245 18 C 0.014 3.986 19 C -0.042 4.042 20 C -0.575 4.575 21 H 0.060 0.940 22 C -0.183 4.183 23 N -0.581 5.581 24 Si 0.771 3.229 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.176 1.176 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.179 0.821 37 H 0.259 0.741 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.100 15.524 4.256 27.341 hybrid contribution 0.008 -1.868 0.942 2.092 sum -22.092 13.657 5.197 26.488 Atomic orbital electron populations 1.23376 0.76286 1.05416 1.02611 1.86190 1.23577 1.26561 1.88912 1.18654 0.88881 0.86374 1.01791 1.21354 1.01200 0.90304 1.05724 1.21067 0.93059 0.98013 0.98492 1.19507 0.93944 0.93207 1.03707 1.19983 0.99561 0.91304 0.82038 1.43703 1.67811 1.17252 1.07753 1.18234 0.99903 0.89404 0.86473 1.21652 1.14019 0.94051 0.99177 1.70011 1.20972 1.26718 1.05372 1.25471 1.02894 0.88333 0.95239 1.43134 1.50378 1.19102 1.07489 0.72790 1.21113 1.00600 0.90896 1.05311 1.18790 0.89342 0.86591 1.02886 1.86137 1.19872 1.29631 1.88867 1.22639 0.75978 0.99585 1.00440 1.19414 0.93742 0.93421 0.97624 1.21097 0.90226 0.94104 1.52035 0.93970 1.25860 0.95018 1.03826 0.93614 1.70023 1.04640 1.31939 1.51481 0.85695 0.79200 0.78593 0.79451 1.18928 1.20283 1.17629 0.91081 0.87150 0.91079 0.81574 0.82231 0.92136 0.89305 0.76248 0.82073 0.74130 0.85500 0.92599 0.92516 0.95659 0.95743 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -9.49 10.28 -79.64 -0.82 -10.31 16 3 C 0.09 2.43 6.70 22.57 0.15 2.59 16 4 C -0.17 -3.06 9.04 22.35 0.20 -2.86 16 5 C -0.09 -1.42 9.69 22.27 0.22 -1.21 16 6 C -0.10 -2.07 5.25 -19.86 -0.10 -2.17 16 7 C 0.19 3.38 5.69 85.63 0.49 3.87 16 8 N -0.73 -12.56 5.74 -347.75 -2.00 -14.55 16 9 C 0.28 5.51 8.17 130.57 1.07 6.57 16 10 C -0.14 -3.41 11.19 83.67 0.94 -2.48 16 11 N -0.51 -13.00 11.24 -198.89 -2.24 -15.24 16 12 C 0.16 2.83 13.08 179.92 2.35 5.19 16 13 N -0.59 -8.88 6.21 -194.89 -1.21 -10.09 16 14 H 0.43 3.63 8.96 -92.71 -0.83 2.80 16 15 C -0.16 -4.43 8.69 22.35 0.19 -4.24 16 16 C 0.07 2.28 6.70 22.57 0.15 2.43 16 17 O -0.33 -13.39 9.92 -79.63 -0.79 -14.18 16 18 C 0.09 3.73 4.68 71.98 0.34 4.07 16 19 C 0.00 -0.22 4.41 29.85 0.13 -0.09 16 20 C -0.54 -31.22 9.66 25.60 0.25 -30.97 16 21 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 22 C 0.02 0.89 5.47 84.66 0.46 1.35 16 23 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 24 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 28 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 29 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 31 H 0.17 1.87 6.30 -2.91 -0.02 1.85 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.40 6.24 8.59 -92.71 -0.80 5.44 16 36 H 0.16 3.69 7.85 -2.91 -0.02 3.66 16 37 H 0.24 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.13 3.77 6.30 -2.91 -0.02 3.75 16 39 H 0.06 2.29 7.65 -2.39 -0.02 2.27 16 40 H 0.06 2.34 7.68 -2.39 -0.02 2.32 16 41 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 42 H 0.02 1.19 7.57 -2.39 -0.02 1.18 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -78.29 363.96 2.45 -75.85 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.63 Total: 16.74 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 7.94 Total: -16.58 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -5.14 Total: -98.21 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.61 Total: -24.49 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -78.29 2.45 -75.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579773943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.306 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds