Wall clock time and date at job start Tue Mar 31 2020 11:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 117.00635 * 2 1 4 4 C 1.38457 * 120.04128 * 359.72233 * 3 2 1 5 5 C 1.38836 * 119.95035 * 179.77176 * 4 3 2 6 6 N 1.40136 * 119.97895 * 180.23411 * 5 4 3 7 7 C 1.34778 * 119.99918 * 213.58621 * 6 5 4 8 8 C 1.50704 * 120.00058 * 185.27460 * 7 6 5 9 9 O 1.21302 * 120.00158 * 5.27540 * 7 6 5 10 10 C 1.38838 * 120.04007 * 0.48410 * 5 4 3 11 11 C 1.38175 * 120.08854 * 359.77165 * 10 5 4 12 12 C 1.38702 * 120.04910 * 0.02562 * 11 10 5 13 13 N 1.40186 * 120.02364 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99332 * 0.02562 * 13 12 11 15 15 C 1.53005 * 109.46757 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46963 * 304.99586 * 15 14 13 17 17 C 1.47204 * 109.46987 * 64.99972 * 15 14 13 18 18 N 5.33447 * 141.86509 * 222.60675 * 2 1 3 19 19 C 1.52995 * 109.46928 * 184.99691 * 15 14 13 20 20 C 1.50703 * 109.47133 * 174.99879 * 19 15 14 21 21 H 1.08008 * 119.99941 * 0.02562 * 20 19 15 22 22 C 1.37872 * 120.00344 * 179.97438 * 20 19 15 23 23 N 1.31515 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00070 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47400 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47160 * 120.00382 * 24 22 20 27 27 H 1.48503 * 109.47082 * 240.00092 * 24 22 20 28 28 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46756 * 60.00253 * 1 2 3 30 30 H 1.08999 * 109.46547 * 300.00684 * 1 2 3 31 31 H 1.07996 * 120.02309 * 359.97438 * 4 3 2 32 32 H 0.96996 * 119.99921 * 33.59068 * 6 5 4 33 33 H 1.08996 * 109.46937 * 60.00275 * 8 7 6 34 34 H 1.09004 * 109.46848 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46984 * 300.00263 * 8 7 6 36 36 H 1.07998 * 119.95233 * 179.74963 * 10 5 4 37 37 H 1.07998 * 119.97685 * 179.97438 * 11 10 5 38 38 H 0.96998 * 120.00232 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47096 * 299.99698 * 14 13 12 40 40 H 1.08998 * 109.47675 * 60.00231 * 14 13 12 41 41 H 1.08996 * 109.47603 * 294.99764 * 19 15 14 42 42 H 1.08999 * 109.47695 * 55.00209 * 19 15 14 43 43 H 0.96999 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2117 0.0000 4 6 1.2935 2.3735 -0.0058 5 6 1.9258 3.6095 -0.0010 6 7 1.1642 4.7858 -0.0019 7 6 1.6167 5.8811 -0.6438 8 6 0.8574 7.1793 -0.5461 9 8 2.6350 5.8221 -1.3002 10 6 3.3124 3.6808 -0.0005 11 6 4.0656 2.5224 -0.0001 12 6 3.4377 1.2857 -0.0006 13 7 4.2024 0.1108 -0.0007 14 6 5.6653 0.1891 0.0003 15 6 6.2516 -1.2242 -0.0006 16 1 5.8459 -1.7864 0.8404 17 6 5.8987 -1.9009 -1.2594 18 7 5.6249 -2.4245 -2.2300 19 6 7.7742 -1.1446 0.1261 20 6 8.3414 -2.5355 0.2487 21 1 7.6818 -3.3907 0.2369 22 6 9.7024 -2.7163 0.3748 23 7 10.5057 -1.6751 0.3886 24 14 10.4055 -4.4404 0.5260 25 1 9.3003 -5.4313 0.4830 26 1 11.3410 -4.6939 -0.5990 27 1 11.1342 -4.5666 1.8138 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5139 0.8899 31 1 0.2149 2.3183 -0.0108 32 1 0.3113 4.8117 0.4594 33 1 0.8015 7.4898 0.4972 34 1 1.3715 7.9454 -1.1265 35 1 -0.1501 7.0413 -0.9386 36 1 3.8028 4.6430 -0.0009 37 1 5.1441 2.5800 -0.0001 38 1 3.7629 -0.7540 -0.0015 39 1 6.0013 0.7220 -0.8892 40 1 6.0001 0.7211 0.8908 41 1 8.1877 -0.6604 -0.7585 42 1 8.0354 -0.5664 1.0124 43 1 11.4631 -1.8023 0.4777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581007296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:15 Heat of formation + Delta-G solvation = -25.426384 kcal Electronic energy + Delta-G solvation = -25264.025024 eV Core-core repulsion = 21502.462390 eV Total energy + Delta-G solvation = -3761.562634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75123 -39.65179 -37.75738 -36.98788 -35.51173 -34.17635 -33.34815 -31.72822 -30.35312 -30.18742 -28.50046 -27.14509 -26.05722 -23.81845 -22.80689 -21.83560 -21.45020 -20.60515 -18.55498 -17.56296 -17.11357 -16.71841 -16.53446 -16.27438 -15.81826 -15.78382 -15.43203 -14.72491 -14.48054 -14.29498 -13.99292 -13.81231 -13.47312 -13.14445 -13.09950 -12.89357 -12.73572 -12.57353 -12.47642 -12.17631 -11.95937 -11.78411 -11.47386 -11.35045 -11.21714 -11.12425 -10.76691 -10.57468 -10.53465 -10.31821 -10.08153 -9.65501 -9.28022 -9.21235 -8.52699 -8.48393 -6.88455 -6.12253 -4.15792 1.34679 1.50877 2.42469 2.87749 3.19943 3.27208 3.35639 3.39594 3.52670 3.58337 3.71688 3.87252 4.39077 4.43269 4.72308 4.75432 4.84610 4.90409 4.95367 4.99819 5.18915 5.24731 5.26084 5.32427 5.37031 5.40216 5.50700 5.61475 5.66494 5.85541 6.01929 6.20656 6.26914 6.32344 6.40106 6.51293 6.81171 7.09622 7.22549 7.38097 7.47339 7.57290 7.82473 7.90891 7.95305 8.18561 8.37931 8.88557 9.49989 10.98599 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002566 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.127535 B =10909.596742 C =11996.973992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.065 3.935 4 C -0.185 4.185 5 C 0.107 3.893 6 N -0.670 5.670 7 C 0.505 3.495 8 C -0.172 4.172 9 O -0.525 6.525 10 C -0.098 4.098 11 C -0.151 4.151 12 C 0.197 3.803 13 N -0.741 5.741 14 C 0.131 3.869 15 C -0.002 4.002 16 H 0.108 0.892 17 C 0.238 3.762 18 N -0.467 5.467 19 C 0.033 3.967 20 C -0.528 4.528 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.406 0.594 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.042 0.958 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.701 15.234 4.279 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.016 3.984 4 C -0.206 4.206 5 C 0.012 3.988 6 N -0.316 5.316 7 C 0.293 3.707 8 C -0.232 4.232 9 O -0.400 6.400 10 C -0.118 4.118 11 C -0.175 4.175 12 C 0.092 3.908 13 N -0.372 5.372 14 C 0.006 3.994 15 C -0.024 4.024 16 H 0.126 0.874 17 C -0.079 4.079 18 N -0.144 5.144 19 C -0.005 4.005 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.208 1.208 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.241 0.759 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.907 14.346 2.347 27.131 hybrid contribution -0.294 -0.956 0.648 1.192 sum -23.202 13.390 2.995 26.955 Atomic orbital electron populations 1.22950 0.78826 1.03605 1.00833 1.86023 1.20911 1.26355 1.89847 1.18110 0.90195 0.84297 1.05748 1.20544 0.99244 0.90613 1.10237 1.17128 0.90676 0.84621 1.06387 1.43471 1.23544 1.10631 1.53948 1.20954 0.85947 0.85530 0.78286 1.21919 1.01698 0.94743 1.04847 1.90775 1.25138 1.84886 1.39233 1.20774 0.91672 0.98867 1.00517 1.20461 1.00302 0.89445 1.07306 1.17254 0.86960 0.88049 0.98530 1.44801 1.05064 1.05432 1.81896 1.21542 0.78730 0.96711 1.02418 1.19464 1.02184 0.92291 0.88418 0.87445 1.29109 0.91355 0.92877 0.94518 1.81046 1.11159 1.10005 1.12176 1.19163 0.83701 0.98619 0.99047 1.21147 0.92211 0.92079 1.51138 0.92434 1.24951 0.97148 0.96961 0.94902 1.69943 1.03859 1.29299 1.49716 0.86524 0.79181 0.84586 0.77719 1.19714 1.20956 1.20803 0.88542 0.93082 0.93005 0.85576 0.75893 0.89154 0.88681 0.89373 0.84957 0.84546 0.76128 0.91642 0.90148 0.95281 0.93942 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -3.92 9.74 -19.75 -0.19 -4.11 16 3 C 0.07 0.85 6.70 -39.10 -0.26 0.58 16 4 C -0.18 -2.02 8.95 -39.28 -0.35 -2.37 16 5 C 0.11 1.23 6.28 -83.62 -0.53 0.70 16 6 N -0.67 -5.51 5.35 -9.82 -0.05 -5.57 16 7 C 0.50 4.73 7.68 -10.98 -0.08 4.64 16 8 C -0.17 -0.77 10.32 36.01 0.37 -0.40 16 9 O -0.53 -7.51 14.77 5.54 0.08 -7.43 16 10 C -0.10 -1.29 8.65 -39.38 -0.34 -1.63 16 11 C -0.15 -2.06 9.31 -39.43 -0.37 -2.43 16 12 C 0.20 2.77 6.67 -83.47 -0.56 2.22 16 13 N -0.74 -10.69 5.53 -58.44 -0.32 -11.01 16 14 C 0.13 1.95 4.28 -4.04 -0.02 1.94 16 15 C 0.00 -0.03 2.26 -93.41 -0.21 -0.24 16 16 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 17 C 0.24 4.87 13.45 -20.75 -0.28 4.59 16 18 N -0.47 -10.43 18.54 42.17 0.78 -9.64 16 19 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 20 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 21 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 24 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 30 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 32 H 0.41 1.79 8.82 -40.82 -0.36 1.43 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.13 1.81 6.41 -52.49 -0.34 1.48 16 37 H 0.14 1.75 6.73 -52.49 -0.35 1.40 16 38 H 0.40 5.88 7.58 -40.82 -0.31 5.57 16 39 H 0.07 1.01 7.95 -51.93 -0.41 0.59 16 40 H 0.08 1.09 7.95 -51.93 -0.41 0.67 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -34.21 370.84 -6.35 -40.56 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.80 Total: 3.01 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.15 Total: -3.05 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 1.14 Total: -50.77 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.11 Total: -11.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.21 -6.35 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581007296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.135 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds