Wall clock time and date at job start Tue Mar 31 2020 11:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 117.00635 * 2 1 4 4 C 1.38457 * 120.04128 * 359.72233 * 3 2 1 5 5 C 1.38836 * 119.95035 * 179.77176 * 4 3 2 6 6 N 1.40136 * 119.97895 * 180.23411 * 5 4 3 7 7 C 1.34778 * 119.99918 * 213.58621 * 6 5 4 8 8 C 1.50704 * 120.00058 * 185.27460 * 7 6 5 9 9 O 1.21302 * 120.00158 * 5.27540 * 7 6 5 10 10 C 1.38838 * 120.04007 * 0.48410 * 5 4 3 11 11 C 1.38175 * 120.08854 * 359.77165 * 10 5 4 12 12 C 1.38702 * 120.04910 * 0.02562 * 11 10 5 13 13 N 1.40186 * 120.02364 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99332 * 0.02562 * 13 12 11 15 15 C 1.53005 * 109.46757 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46963 * 304.99586 * 15 14 13 17 17 C 1.47204 * 109.46987 * 64.99972 * 15 14 13 18 18 N 5.33447 * 141.86509 * 222.60675 * 2 1 3 19 19 C 1.52995 * 109.46928 * 184.99691 * 15 14 13 20 20 C 1.50703 * 109.47133 * 174.99879 * 19 15 14 21 21 H 1.08008 * 119.99941 * 0.02562 * 20 19 15 22 22 C 1.37872 * 120.00344 * 179.97438 * 20 19 15 23 23 N 1.31515 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00070 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47400 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47160 * 120.00382 * 24 22 20 27 27 H 1.48503 * 109.47082 * 240.00092 * 24 22 20 28 28 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46756 * 60.00253 * 1 2 3 30 30 H 1.08999 * 109.46547 * 300.00684 * 1 2 3 31 31 H 1.07996 * 120.02309 * 359.97438 * 4 3 2 32 32 H 0.96996 * 119.99921 * 33.59068 * 6 5 4 33 33 H 1.08996 * 109.46937 * 60.00275 * 8 7 6 34 34 H 1.09004 * 109.46848 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46984 * 300.00263 * 8 7 6 36 36 H 1.07998 * 119.95233 * 179.74963 * 10 5 4 37 37 H 1.07998 * 119.97685 * 179.97438 * 11 10 5 38 38 H 0.96998 * 120.00232 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47096 * 299.99698 * 14 13 12 40 40 H 1.08998 * 109.47675 * 60.00231 * 14 13 12 41 41 H 1.08996 * 109.47603 * 294.99764 * 19 15 14 42 42 H 1.08999 * 109.47695 * 55.00209 * 19 15 14 43 43 H 0.96999 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2117 0.0000 4 6 1.2935 2.3735 -0.0058 5 6 1.9258 3.6095 -0.0010 6 7 1.1642 4.7858 -0.0019 7 6 1.6167 5.8811 -0.6438 8 6 0.8574 7.1793 -0.5461 9 8 2.6350 5.8221 -1.3002 10 6 3.3124 3.6808 -0.0005 11 6 4.0656 2.5224 -0.0001 12 6 3.4377 1.2857 -0.0006 13 7 4.2024 0.1108 -0.0007 14 6 5.6653 0.1891 0.0003 15 6 6.2516 -1.2242 -0.0006 16 1 5.8459 -1.7864 0.8404 17 6 5.8987 -1.9009 -1.2594 18 7 5.6249 -2.4245 -2.2300 19 6 7.7742 -1.1446 0.1261 20 6 8.3414 -2.5355 0.2487 21 1 7.6818 -3.3907 0.2369 22 6 9.7024 -2.7163 0.3748 23 7 10.5057 -1.6751 0.3886 24 14 10.4055 -4.4404 0.5260 25 1 9.3003 -5.4313 0.4830 26 1 11.3410 -4.6939 -0.5990 27 1 11.1342 -4.5666 1.8138 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5139 0.8899 31 1 0.2149 2.3183 -0.0108 32 1 0.3113 4.8117 0.4594 33 1 0.8015 7.4898 0.4972 34 1 1.3715 7.9454 -1.1265 35 1 -0.1501 7.0413 -0.9386 36 1 3.8028 4.6430 -0.0009 37 1 5.1441 2.5800 -0.0001 38 1 3.7629 -0.7540 -0.0015 39 1 6.0013 0.7220 -0.8892 40 1 6.0001 0.7211 0.8908 41 1 8.1877 -0.6604 -0.7585 42 1 8.0354 -0.5664 1.0124 43 1 11.4631 -1.8023 0.4777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581007296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:14 Heat of formation + Delta-G solvation = -48.758327 kcal Electronic energy + Delta-G solvation = -25265.036773 eV Core-core repulsion = 21502.462390 eV Total energy + Delta-G solvation = -3762.574383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61453 -40.49828 -38.98375 -38.12102 -36.73008 -35.65145 -34.81016 -33.26811 -31.14762 -31.04436 -29.49616 -28.23511 -27.27138 -25.19237 -23.93583 -23.40514 -22.45283 -21.40237 -19.46518 -18.67190 -18.43043 -18.14134 -17.83397 -17.16338 -16.84185 -16.59027 -16.52141 -16.14068 -15.74441 -15.30362 -15.05471 -14.85199 -14.62759 -14.44334 -14.20576 -14.19334 -13.87299 -13.66436 -13.52117 -13.24029 -13.14713 -13.00673 -12.89761 -12.69032 -12.49116 -12.41307 -12.22964 -12.07722 -11.99865 -11.50029 -11.45023 -11.20325 -10.91599 -10.56383 -10.14659 -9.45213 -8.20288 -7.89476 -6.28506 0.41651 0.53912 1.38960 1.42166 1.52192 1.69114 1.89401 1.92595 2.19922 2.34394 2.41892 2.64023 2.91624 3.13309 3.18762 3.84780 3.93561 3.97983 4.23689 4.26090 4.31071 4.46184 4.46801 4.51295 4.55863 4.67509 4.70604 4.71828 4.78450 4.84321 4.88872 4.95505 5.15791 5.28317 5.38368 5.45719 5.56777 5.59164 5.77733 5.90952 6.10948 6.20216 6.56125 6.60759 6.70292 6.83949 6.88763 7.26223 7.40133 8.90865 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002566 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.127535 B =10909.596742 C =11996.973992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.337 6.337 3 C 0.062 3.938 4 C -0.178 4.178 5 C 0.110 3.890 6 N -0.657 5.657 7 C 0.498 3.502 8 C -0.161 4.161 9 O -0.582 6.582 10 C -0.117 4.117 11 C -0.159 4.159 12 C 0.172 3.828 13 N -0.744 5.744 14 C 0.144 3.856 15 C 0.012 3.988 16 H 0.129 0.871 17 C 0.250 3.750 18 N -0.501 5.501 19 C 0.039 3.961 20 C -0.538 4.538 21 H 0.055 0.945 22 C 0.011 3.989 23 N -0.922 5.922 24 Si 0.949 3.051 25 H -0.269 1.269 26 H -0.286 1.286 27 H -0.272 1.272 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.427 0.573 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.402 0.598 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.004 0.996 42 H 0.042 0.958 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.488 15.659 5.340 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.252 6.252 3 C 0.013 3.987 4 C -0.199 4.199 5 C 0.014 3.986 6 N -0.304 5.304 7 C 0.289 3.711 8 C -0.220 4.220 9 O -0.462 6.462 10 C -0.138 4.138 11 C -0.183 4.183 12 C 0.069 3.931 13 N -0.376 5.376 14 C 0.019 3.981 15 C -0.009 4.009 16 H 0.147 0.853 17 C -0.066 4.066 18 N -0.178 5.178 19 C 0.000 4.000 20 C -0.576 4.576 21 H 0.074 0.926 22 C -0.188 4.188 23 N -0.562 5.562 24 Si 0.775 3.225 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.237 0.763 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.767 14.786 3.437 29.906 hybrid contribution 0.458 -1.034 0.315 1.174 sum -25.309 13.752 3.753 29.047 Atomic orbital electron populations 1.23264 0.76607 1.05129 1.02176 1.86005 1.23287 1.26152 1.89743 1.18281 0.89998 0.85294 1.05143 1.20805 1.00767 0.89477 1.08880 1.17286 0.90417 0.86143 1.04748 1.43447 1.23978 1.09408 1.53576 1.21922 0.85350 0.86903 0.76924 1.21936 1.02085 0.91387 1.06637 1.90760 1.27825 1.85791 1.41797 1.20793 0.92878 0.98201 1.01935 1.20510 1.00444 0.89754 1.07586 1.17402 0.87817 0.87730 1.00136 1.44606 1.04428 1.05624 1.82898 1.21328 0.79435 0.94475 1.02889 1.19373 0.99321 0.94244 0.87993 0.85339 1.29551 0.90473 0.92063 0.94556 1.81041 1.12227 1.11331 1.13242 1.18978 0.86605 0.96649 0.97761 1.21552 0.92424 0.93574 1.50082 0.92633 1.25713 0.97820 1.00262 0.95021 1.70037 1.04116 1.31058 1.51016 0.85628 0.78415 0.80608 0.77813 1.19367 1.21241 1.19779 0.87146 0.92152 0.91084 0.82260 0.73344 0.86547 0.89328 0.86525 0.86097 0.84753 0.76262 0.92471 0.88537 0.97750 0.93963 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -7.78 9.74 -93.59 -0.91 -8.69 16 3 C 0.06 1.52 6.70 22.58 0.15 1.67 16 4 C -0.18 -3.49 8.95 22.47 0.20 -3.29 16 5 C 0.11 2.38 6.28 38.10 0.24 2.62 16 6 N -0.66 -9.33 5.35 -303.37 -1.62 -10.96 16 7 C 0.50 8.63 7.68 87.66 0.67 9.30 16 8 C -0.16 -0.98 10.32 71.24 0.74 -0.25 16 9 O -0.58 -16.86 14.77 -3.10 -0.05 -16.91 16 10 C -0.12 -3.15 8.65 22.40 0.19 -2.95 16 11 C -0.16 -4.44 9.31 22.37 0.21 -4.23 16 12 C 0.17 4.83 6.67 38.17 0.25 5.09 16 13 N -0.74 -21.27 5.53 -338.80 -1.87 -23.15 16 14 C 0.14 4.30 4.28 86.38 0.37 4.66 16 15 C 0.01 0.44 2.26 -12.60 -0.03 0.41 16 16 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 17 C 0.25 10.22 13.45 89.44 1.20 11.42 16 18 N -0.50 -22.48 18.54 20.01 0.37 -22.11 16 19 C 0.04 1.77 4.42 29.85 0.13 1.91 16 20 C -0.54 -28.31 8.60 25.60 0.22 -28.09 16 21 H 0.06 2.89 7.59 -2.91 -0.02 2.87 16 22 C 0.01 0.60 5.46 84.65 0.46 1.06 16 23 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 24 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.68 7.65 -2.39 -0.02 0.66 16 30 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 31 H 0.16 1.95 6.29 -2.91 -0.02 1.93 16 32 H 0.43 2.25 8.82 -92.71 -0.82 1.43 16 33 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 35 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.12 3.48 6.41 -2.91 -0.02 3.47 16 37 H 0.13 3.61 6.73 -2.91 -0.02 3.59 16 38 H 0.40 11.55 7.58 -92.71 -0.70 10.85 16 39 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 40 H 0.10 2.57 7.95 -2.39 -0.02 2.56 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.64 370.84 3.90 -71.74 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.46 Total: 16.47 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.13 Total: 0.76 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -2.84 Total: -108.89 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.96 Total: -25.60 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.64 3.90 -71.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581007296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.985 kcal (2) G-P(sol) polarization free energy of solvation -75.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds