Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42103 * 108.58567 * 2 1 4 4 O 1.42103 * 108.57663 * 228.97368 * 2 1 3 5 5 C 1.81401 * 101.92257 * 114.49127 * 2 1 3 6 6 C 1.53001 * 109.47094 * 185.93567 * 5 2 1 7 7 C 1.52999 * 115.55095 * 293.86389 * 6 5 2 8 8 N 1.46496 * 109.47315 * 280.78197 * 7 6 5 9 9 C 1.34777 * 119.99623 * 175.55217 * 8 7 6 10 10 O 1.21280 * 120.00360 * 359.72738 * 9 8 7 11 11 C 1.50704 * 119.99394 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.46831 * 179.72439 * 11 9 8 13 13 C 1.53004 * 109.47210 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47210 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47172 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99697 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00109 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47312 * 59.99551 * 19 17 15 21 21 H 1.48503 * 109.47184 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46895 * 299.99265 * 19 17 15 23 23 C 1.52998 * 117.51918 * 79.56852 * 6 5 2 24 24 C 1.52999 * 60.00197 * 107.47953 * 23 6 5 25 25 H 1.09008 * 109.47059 * 305.51178 * 1 2 3 26 26 H 1.08997 * 109.47190 * 65.50976 * 1 2 3 27 27 H 1.08997 * 109.47707 * 185.51618 * 1 2 3 28 28 H 1.09001 * 109.47110 * 65.93797 * 5 2 1 29 29 H 1.08998 * 109.46962 * 305.93586 * 5 2 1 30 30 H 1.09002 * 109.46752 * 160.77980 * 7 6 5 31 31 H 1.09003 * 109.46646 * 40.78599 * 7 6 5 32 32 H 0.96994 * 120.00259 * 355.55828 * 8 7 6 33 33 H 1.09000 * 109.46952 * 299.72283 * 11 9 8 34 34 H 1.08995 * 109.47608 * 59.72831 * 11 9 8 35 35 H 1.09000 * 109.47225 * 299.99676 * 12 11 9 36 36 H 1.09005 * 109.47435 * 60.00085 * 12 11 9 37 37 H 1.09000 * 109.47076 * 300.00151 * 13 12 11 38 38 H 1.08997 * 109.46846 * 59.99737 * 13 12 11 39 39 H 1.09000 * 109.47225 * 300.00060 * 14 13 12 40 40 H 1.09001 * 109.46989 * 59.99873 * 14 13 12 41 41 H 0.96999 * 120.00541 * 180.02562 * 18 17 15 42 42 H 1.09003 * 117.50056 * 214.96790 * 23 6 5 43 43 H 1.09007 * 117.50051 * 359.97438 * 23 6 5 44 44 H 1.08995 * 117.50176 * 252.51312 * 24 23 6 45 45 H 1.08996 * 117.50067 * 107.48895 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.6979 -0.6840 1.8614 7 6 4.5489 -1.5462 0.9269 8 7 4.5015 -2.9413 1.3713 9 6 5.1073 -3.9010 0.6443 10 8 5.6875 -3.6103 -0.3803 11 6 5.0580 -5.3363 1.1012 12 6 5.8114 -6.2159 0.1014 13 6 5.7619 -7.6730 0.5656 14 6 6.5148 -8.5526 -0.4346 15 6 6.4655 -9.9879 0.0223 16 1 5.9492 -10.2466 0.9349 17 6 7.0804 -10.9705 -0.7243 18 7 7.7095 -10.6553 -1.8354 19 14 7.0199 -12.7494 -0.1577 20 1 5.6057 -13.1945 -0.0740 21 1 7.7505 -13.6033 -1.1284 22 1 7.6552 -12.8648 1.1797 23 6 4.2920 0.6446 2.3333 24 6 4.1728 -0.5291 3.3076 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0988 28 1 1.8538 -1.7730 1.6285 29 1 1.6736 -0.1776 2.3970 30 1 5.5801 -1.1936 0.9459 31 1 4.1592 -1.4748 -0.0886 32 1 4.0340 -3.1744 2.1886 33 1 5.5238 -5.4212 2.0830 34 1 4.0199 -5.6628 1.1621 35 1 5.3455 -6.1309 -0.8803 36 1 6.8496 -5.8894 0.0405 37 1 6.2280 -7.7576 1.5473 38 1 4.7239 -7.9997 0.6269 39 1 6.0483 -8.4679 -1.4161 40 1 7.5528 -8.2260 -0.4963 41 1 8.1418 -11.3466 -2.3609 42 1 5.2892 0.9045 1.9780 43 1 3.6077 1.4823 2.4680 44 1 3.4101 -0.4637 4.0835 45 1 5.0915 -1.0413 3.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588631849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = -104.874650 kcal Electronic energy + Delta-G solvation = -24095.035181 eV Core-core repulsion = 20433.178612 eV Total energy + Delta-G solvation = -3661.856569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.96210 -38.59111 -37.38248 -36.39470 -34.89355 -34.11986 -32.57084 -30.53385 -29.98400 -29.49668 -27.25350 -25.17249 -23.08056 -22.20569 -20.47814 -20.06364 -19.87272 -19.21232 -17.27003 -17.06642 -16.60758 -16.41797 -16.15358 -15.82268 -15.73478 -15.28949 -14.91485 -14.41311 -14.11524 -13.83358 -13.75446 -13.58673 -13.44134 -13.02878 -12.59048 -12.41364 -12.37095 -12.22429 -12.04293 -11.95979 -11.82714 -11.63495 -11.56168 -11.43852 -10.93855 -10.89591 -10.50973 -10.47483 -10.36269 -10.31117 -9.70903 -9.56517 -9.17536 -9.11729 -8.94914 -8.26983 -5.91729 -3.94326 -0.52814 2.25707 2.79594 2.83737 3.13379 3.37256 3.39607 3.41610 3.43796 3.52018 3.83114 3.97190 4.10041 4.25779 4.34543 4.41490 4.51552 4.68022 4.83808 4.97289 5.10253 5.14999 5.22274 5.37997 5.40736 5.42134 5.43510 5.50577 5.60114 5.62974 5.91671 6.19338 6.32509 6.36446 6.60179 6.89492 7.07913 7.24574 7.48843 7.77748 7.94741 8.10077 8.34137 8.51513 9.13279 9.68955 11.19580 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.002036 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.178304 B =13750.260744 C =14172.281456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.414 3.586 3 O -0.933 6.933 4 O -0.926 6.926 5 C -0.573 4.573 6 C -0.147 4.147 7 C 0.134 3.866 8 N -0.735 5.735 9 C 0.510 3.490 10 O -0.530 6.530 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.154 4.154 24 C -0.152 4.152 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.586 27.014 12.740 34.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.595 3.405 3 O -0.930 6.930 4 O -0.923 6.923 5 C -0.701 4.701 6 C -0.148 4.148 7 C 0.010 3.990 8 N -0.389 5.389 9 C 0.297 3.703 10 O -0.405 6.405 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.192 4.192 24 C -0.190 4.190 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.494 27.442 11.146 33.427 hybrid contribution -1.011 -1.426 1.345 2.206 sum -16.505 26.016 12.492 33.246 Atomic orbital electron populations 1.30326 1.27119 1.11673 1.11850 1.08169 0.78231 0.76173 0.77882 1.93600 1.78813 1.34220 1.86344 1.93663 1.78379 1.66697 1.53545 1.29897 1.02211 1.14395 1.23583 1.21131 0.90885 1.02869 0.99941 1.21122 0.99476 0.80686 0.97733 1.45998 1.57798 1.06809 1.28304 1.21113 0.77675 0.87918 0.83560 1.90727 1.42343 1.83300 1.24101 1.21786 1.03387 0.90594 1.01971 1.21462 1.00142 0.94935 0.97697 1.21645 1.00341 0.92639 1.00103 1.19096 0.95344 0.93312 0.94003 1.21247 1.33844 0.92619 1.08169 0.92843 1.25045 0.95509 0.98991 0.95053 1.69964 1.35543 1.33287 1.14658 0.86670 0.78066 0.84919 0.78375 1.20316 1.21338 1.20315 1.23267 1.03346 0.90791 1.01751 1.23100 1.03486 1.01898 0.90535 0.85446 0.85090 0.85208 0.84323 0.84697 0.90567 0.89017 0.76695 0.89216 0.89198 0.91703 0.91791 0.93538 0.93523 0.96557 0.96592 0.92992 0.87354 0.87197 0.87983 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.83 10.62 101.05 1.07 -0.76 16 2 S 2.41 15.57 5.15 -107.50 -0.55 15.02 16 3 O -0.93 -8.81 17.81 -57.83 -1.03 -9.84 16 4 O -0.93 -10.60 16.12 -57.83 -0.93 -11.53 16 5 C -0.57 -2.25 5.67 37.16 0.21 -2.04 16 6 C -0.15 -0.94 1.49 -154.51 -0.23 -1.17 16 7 C 0.13 1.37 5.52 -4.04 -0.02 1.35 16 8 N -0.74 -7.52 5.53 -60.29 -0.33 -7.86 16 9 C 0.51 7.42 7.83 -10.98 -0.09 7.33 16 10 O -0.53 -10.27 15.98 5.56 0.09 -10.19 16 11 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 12 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C -0.15 -0.89 9.64 -26.73 -0.26 -1.15 16 24 C -0.15 -0.71 9.87 -26.73 -0.26 -0.98 16 25 H 0.13 0.06 8.14 -51.92 -0.42 -0.36 16 26 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.14 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.13 0.08 8.08 -51.93 -0.42 -0.34 16 30 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 31 H 0.09 1.16 5.77 -51.93 -0.30 0.86 16 32 H 0.40 2.71 8.44 -40.82 -0.34 2.37 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -40.61 386.72 -9.53 -50.15 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.78 Total: -4.04 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -0.54 Total: -17.50 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.40 Total: -34.98 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.87 Total: -31.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 15.57 SS G_CDS: -0.55 Total: 15.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.61 -9.53 -50.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588631849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.726 kcal (2) G-P(sol) polarization free energy of solvation -40.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds