Wall clock time and date at job start Tue Mar 31 2020 11:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42103 * 108.58567 * 2 1 4 4 O 1.42103 * 108.57663 * 228.97368 * 2 1 3 5 5 C 1.81401 * 101.92257 * 114.49127 * 2 1 3 6 6 C 1.53001 * 109.47094 * 185.93567 * 5 2 1 7 7 C 1.52999 * 115.55095 * 293.86389 * 6 5 2 8 8 N 1.46496 * 109.47315 * 280.78197 * 7 6 5 9 9 C 1.34777 * 119.99623 * 175.55217 * 8 7 6 10 10 O 1.21280 * 120.00360 * 359.72738 * 9 8 7 11 11 C 1.50704 * 119.99394 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.46831 * 179.72439 * 11 9 8 13 13 C 1.53004 * 109.47210 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47210 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47172 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99697 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00109 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47312 * 59.99551 * 19 17 15 21 21 H 1.48503 * 109.47184 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46895 * 299.99265 * 19 17 15 23 23 C 1.52998 * 117.51918 * 79.56852 * 6 5 2 24 24 C 1.52999 * 60.00197 * 107.47953 * 23 6 5 25 25 H 1.09008 * 109.47059 * 305.51178 * 1 2 3 26 26 H 1.08997 * 109.47190 * 65.50976 * 1 2 3 27 27 H 1.08997 * 109.47707 * 185.51618 * 1 2 3 28 28 H 1.09001 * 109.47110 * 65.93797 * 5 2 1 29 29 H 1.08998 * 109.46962 * 305.93586 * 5 2 1 30 30 H 1.09002 * 109.46752 * 160.77980 * 7 6 5 31 31 H 1.09003 * 109.46646 * 40.78599 * 7 6 5 32 32 H 0.96994 * 120.00259 * 355.55828 * 8 7 6 33 33 H 1.09000 * 109.46952 * 299.72283 * 11 9 8 34 34 H 1.08995 * 109.47608 * 59.72831 * 11 9 8 35 35 H 1.09000 * 109.47225 * 299.99676 * 12 11 9 36 36 H 1.09005 * 109.47435 * 60.00085 * 12 11 9 37 37 H 1.09000 * 109.47076 * 300.00151 * 13 12 11 38 38 H 1.08997 * 109.46846 * 59.99737 * 13 12 11 39 39 H 1.09000 * 109.47225 * 300.00060 * 14 13 12 40 40 H 1.09001 * 109.46989 * 59.99873 * 14 13 12 41 41 H 0.96999 * 120.00541 * 180.02562 * 18 17 15 42 42 H 1.09003 * 117.50056 * 214.96790 * 23 6 5 43 43 H 1.09007 * 117.50051 * 359.97438 * 23 6 5 44 44 H 1.08995 * 117.50176 * 252.51312 * 24 23 6 45 45 H 1.08996 * 117.50067 * 107.48895 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.6979 -0.6840 1.8614 7 6 4.5489 -1.5462 0.9269 8 7 4.5015 -2.9413 1.3713 9 6 5.1073 -3.9010 0.6443 10 8 5.6875 -3.6103 -0.3803 11 6 5.0580 -5.3363 1.1012 12 6 5.8114 -6.2159 0.1014 13 6 5.7619 -7.6730 0.5656 14 6 6.5148 -8.5526 -0.4346 15 6 6.4655 -9.9879 0.0223 16 1 5.9492 -10.2466 0.9349 17 6 7.0804 -10.9705 -0.7243 18 7 7.7095 -10.6553 -1.8354 19 14 7.0199 -12.7494 -0.1577 20 1 5.6057 -13.1945 -0.0740 21 1 7.7505 -13.6033 -1.1284 22 1 7.6552 -12.8648 1.1797 23 6 4.2920 0.6446 2.3333 24 6 4.1728 -0.5291 3.3076 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0988 28 1 1.8538 -1.7730 1.6285 29 1 1.6736 -0.1776 2.3970 30 1 5.5801 -1.1936 0.9459 31 1 4.1592 -1.4748 -0.0886 32 1 4.0340 -3.1744 2.1886 33 1 5.5238 -5.4212 2.0830 34 1 4.0199 -5.6628 1.1621 35 1 5.3455 -6.1309 -0.8803 36 1 6.8496 -5.8894 0.0405 37 1 6.2280 -7.7576 1.5473 38 1 4.7239 -7.9997 0.6269 39 1 6.0483 -8.4679 -1.4161 40 1 7.5528 -8.2260 -0.4963 41 1 8.1418 -11.3466 -2.3609 42 1 5.2892 0.9045 1.9780 43 1 3.6077 1.4823 2.4680 44 1 3.4101 -0.4637 4.0835 45 1 5.0915 -1.0413 3.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588631849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:05 Heat of formation + Delta-G solvation = -136.550949 kcal Electronic energy + Delta-G solvation = -24096.408768 eV Core-core repulsion = 20433.178612 eV Total energy + Delta-G solvation = -3663.230157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94702 -39.30923 -37.98091 -36.97840 -36.63857 -35.13960 -34.59164 -31.60871 -30.81972 -29.94992 -28.44308 -26.78034 -24.07604 -23.38492 -21.77295 -21.35724 -20.74380 -19.71765 -18.41280 -18.05638 -17.66007 -17.29899 -17.00809 -16.86919 -16.64252 -16.45209 -16.00201 -15.69620 -15.24362 -14.67757 -14.52099 -14.20929 -14.04037 -13.92936 -13.78917 -13.58944 -13.50405 -13.27019 -13.00089 -12.99098 -12.77010 -12.66408 -12.47813 -12.36240 -12.28675 -12.14913 -12.10999 -11.86996 -11.40086 -11.36366 -11.33243 -11.16421 -10.86140 -10.57009 -10.53712 -10.11251 -8.17513 -6.30157 -0.93821 1.40747 1.45285 1.53091 1.66743 1.89250 2.07192 2.42886 2.68758 2.84951 3.10786 3.14908 3.41964 3.53255 3.58609 3.86875 3.98416 4.07745 4.08037 4.16299 4.18498 4.39073 4.48545 4.58722 4.66145 4.71186 4.77227 4.81496 4.85227 4.90162 4.94524 5.00193 5.05398 5.20332 5.24577 5.34726 5.35348 5.43905 5.58236 5.79032 5.88923 6.25830 6.58792 6.88394 7.31123 7.39459 8.94692 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.002036 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.178304 B =13750.260744 C =14172.281456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.393 3.607 3 O -0.978 6.978 4 O -0.994 6.994 5 C -0.555 4.555 6 C -0.160 4.160 7 C 0.128 3.872 8 N -0.709 5.709 9 C 0.506 3.494 10 O -0.592 6.592 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.094 4.094 14 C 0.017 3.983 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.167 4.167 24 C -0.127 4.127 25 H 0.161 0.839 26 H 0.130 0.870 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.182 0.818 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.421 0.579 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.062 0.938 39 H -0.018 1.018 40 H -0.017 1.017 41 H 0.263 0.737 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.573 26.510 17.092 37.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.582 3.418 3 O -0.975 6.975 4 O -0.991 6.991 5 C -0.686 4.686 6 C -0.162 4.162 7 C 0.003 3.997 8 N -0.363 5.363 9 C 0.294 3.706 10 O -0.472 6.472 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.204 4.204 24 C -0.165 4.165 25 H 0.179 0.821 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.200 0.800 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.259 0.741 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.492 26.975 15.531 36.205 hybrid contribution -0.097 -1.205 -0.004 1.209 sum -18.589 25.769 15.527 35.365 Atomic orbital electron populations 1.30128 1.21891 1.13880 1.13418 1.08254 0.80163 0.74831 0.78533 1.93540 1.80755 1.35927 1.87254 1.93589 1.80759 1.67686 1.57067 1.29772 1.00742 1.16125 1.21935 1.21051 0.91849 1.02654 1.00641 1.21101 0.99598 0.81181 0.97777 1.45737 1.56166 1.06190 1.28174 1.21353 0.77226 0.89039 0.82988 1.90715 1.45310 1.84213 1.26921 1.21674 1.04695 0.88670 1.01438 1.21269 0.99545 0.94695 0.98186 1.21436 1.00248 0.92642 0.98796 1.19068 0.94048 0.94549 0.94313 1.21727 1.33922 0.93549 1.08727 0.91387 1.26135 0.94849 1.04637 0.94980 1.70136 1.36547 1.35112 1.16186 0.85406 0.78770 0.78057 0.78222 1.18817 1.21185 1.18797 1.23370 1.03124 0.91322 1.02600 1.23232 1.03927 0.99721 0.89632 0.82086 0.85172 0.83061 0.82134 0.80034 0.92006 0.91934 0.74135 0.85893 0.85996 0.94217 0.94051 0.91831 0.91895 0.99910 0.99867 0.92875 0.88640 0.85980 0.84876 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.69 10.62 113.37 1.20 -0.48 16 2 S 2.39 30.08 5.15 -56.49 -0.29 29.78 16 3 O -0.98 -19.14 17.81 -127.37 -2.27 -21.41 16 4 O -0.99 -24.78 16.12 -127.37 -2.05 -26.83 16 5 C -0.56 -2.54 5.67 71.98 0.41 -2.13 16 6 C -0.16 -1.76 1.49 -52.18 -0.08 -1.84 16 7 C 0.13 2.67 5.52 86.38 0.48 3.15 16 8 N -0.71 -13.59 5.53 -463.06 -2.56 -16.15 16 9 C 0.51 14.65 7.83 87.66 0.69 15.34 16 10 O -0.59 -24.39 15.98 -3.03 -0.05 -24.44 16 11 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 12 C -0.10 -3.71 4.50 30.60 0.14 -3.57 16 13 C -0.09 -3.88 5.15 30.60 0.16 -3.73 16 14 C 0.02 0.97 4.97 29.85 0.15 1.12 16 15 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 17 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 18 N -0.94 -60.09 13.29 21.45 0.28 -59.81 16 19 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 C -0.17 -1.69 9.64 30.59 0.29 -1.40 16 24 C -0.13 -0.74 9.87 30.60 0.30 -0.44 16 25 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.18 -0.84 8.08 -2.39 -0.02 -0.86 16 30 H 0.06 1.44 7.96 -2.39 -0.02 1.42 16 31 H 0.06 1.74 5.77 -2.39 -0.01 1.73 16 32 H 0.42 4.26 8.44 -92.71 -0.78 3.47 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 43 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -96.77 386.72 -0.12 -96.89 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.18 Total: 3.31 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.60 Total: -28.51 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.27 Total: -75.96 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -4.37 Total: -72.67 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 30.08 SS G_CDS: -0.29 Total: 29.78 kcal Total: -96.77 -0.12 -96.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588631849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.658 kcal (2) G-P(sol) polarization free energy of solvation -96.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds