Wall clock time and date at job start Tue Mar 31 2020 11:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 108.58259 * 2 1 4 4 O 1.42098 * 108.58055 * 228.97333 * 2 1 3 5 5 C 1.81400 * 101.91965 * 114.48651 * 2 1 3 6 6 H 1.09000 * 109.49647 * 65.06638 * 5 2 1 7 7 C 1.53032 * 109.49843 * 304.99647 * 5 2 1 8 8 C 1.53038 * 109.53819 * 178.65145 * 7 5 2 9 9 C 1.53194 * 109.31461 * 61.36787 * 8 7 5 10 10 N 1.46923 * 108.77264 * 305.36678 * 9 8 7 11 11 C 1.34783 * 120.62864 * 233.58665 * 10 9 8 12 12 O 1.21283 * 119.99731 * 180.02562 * 11 10 9 13 13 C 1.50702 * 120.00007 * 359.97438 * 11 10 9 14 14 C 1.53003 * 109.46878 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46838 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.46925 * 118.74183 * 53.85800 * 10 9 8 26 26 H 1.09006 * 109.47166 * 305.51828 * 1 2 3 27 27 H 1.09006 * 109.47240 * 65.50873 * 1 2 3 28 28 H 1.08990 * 109.47387 * 185.51500 * 1 2 3 29 29 H 1.09003 * 109.45773 * 58.63326 * 7 5 2 30 30 H 1.09000 * 109.46594 * 298.67523 * 7 5 2 31 31 H 1.08997 * 109.50231 * 301.41447 * 8 7 5 32 32 H 1.09002 * 109.52817 * 181.33266 * 8 7 5 33 33 H 1.08997 * 109.58975 * 185.57784 * 9 8 7 34 34 H 1.08997 * 109.58395 * 65.15265 * 9 8 7 35 35 H 1.08998 * 109.46799 * 60.00721 * 13 11 10 36 36 H 1.09002 * 109.46835 * 300.00164 * 13 11 10 37 37 H 1.08998 * 109.46943 * 60.00655 * 14 13 11 38 38 H 1.08994 * 109.47116 * 300.00266 * 14 13 11 39 39 H 1.09004 * 109.46806 * 60.00265 * 15 14 13 40 40 H 1.09000 * 109.47828 * 300.00570 * 15 14 13 41 41 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 42 42 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 43 43 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58462 * 65.92993 * 25 10 9 45 45 H 1.08996 * 109.58834 * 186.35230 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 1 1.8399 -1.7682 1.6344 7 6 1.4846 0.0618 2.7154 8 6 1.7728 -0.5779 4.0755 9 6 3.2808 -0.5428 4.3426 10 7 3.9755 -1.1810 3.2162 11 6 4.8480 -2.1863 3.4282 12 8 5.4155 -2.7046 2.4900 13 6 5.1192 -2.6654 4.8310 14 6 6.1398 -3.8046 4.7924 15 6 6.4157 -4.2906 6.2167 16 6 7.4367 -5.4293 6.1782 17 6 7.7080 -5.9084 7.5811 18 1 7.2023 -5.4472 8.4165 19 6 8.5970 -6.9399 7.7975 20 7 8.8296 -7.3617 9.0213 21 14 9.4711 -7.7382 6.3525 22 1 10.7467 -7.0246 6.0900 23 1 9.7560 -9.1605 6.6707 24 1 8.6055 -7.6642 5.1481 25 6 3.7057 -0.6986 1.8549 26 1 -0.3634 0.5971 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0988 29 1 0.4098 0.0603 2.5338 30 1 1.8518 1.0881 2.7117 31 1 1.4280 -1.6119 4.0716 32 1 1.2520 -0.0238 4.8564 33 1 3.5017 -1.0845 5.2623 34 1 3.6112 0.4916 4.4369 35 1 4.1919 -3.0229 5.2785 36 1 5.5160 -1.8425 5.4256 37 1 7.0671 -3.4466 4.3452 38 1 5.7435 -4.6275 4.1977 39 1 5.4885 -4.6484 6.6644 40 1 6.8122 -3.4675 6.8112 41 1 8.3638 -5.0711 5.7307 42 1 7.0407 -6.2526 5.5838 43 1 9.4553 -8.0871 9.1735 44 1 4.0701 0.3233 1.7505 45 1 4.2070 -1.3430 1.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588682311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:18 Heat of formation + Delta-G solvation = -124.174904 kcal Electronic energy + Delta-G solvation = -24610.917125 eV Core-core repulsion = 20948.223634 eV Total energy + Delta-G solvation = -3662.693491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48162 -37.94179 -37.42145 -36.51094 -35.10228 -33.65915 -32.62315 -31.87567 -30.31350 -29.93957 -26.61945 -25.36593 -24.11997 -22.33306 -21.32738 -20.06309 -19.37437 -19.13898 -17.62221 -16.96426 -16.75698 -16.51353 -16.39056 -15.92699 -15.84207 -15.33446 -14.65482 -14.56680 -14.19810 -13.83067 -13.81515 -13.67816 -13.45417 -13.42807 -12.75408 -12.58256 -12.56817 -12.46579 -12.38979 -12.18719 -11.78665 -11.73696 -11.65403 -11.54350 -11.35585 -11.13465 -10.85436 -10.72415 -10.55649 -9.97295 -9.83058 -9.65873 -9.44647 -9.12700 -9.02458 -8.49728 -6.01095 -3.98559 -0.58172 2.16209 2.50742 2.64402 3.13306 3.35464 3.40818 3.42491 3.48566 3.81148 3.89490 4.20551 4.23271 4.35748 4.38898 4.49875 4.51003 4.64591 4.80830 4.94556 5.05075 5.12465 5.13763 5.15557 5.22415 5.23536 5.30256 5.33919 5.34885 5.62457 5.72726 5.99531 6.04434 6.14424 6.39094 6.65964 6.79603 6.97278 7.11025 7.37175 7.49968 7.84181 8.03846 8.57528 9.03700 9.62366 11.12348 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002237 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.743366 B =12513.564164 C =13081.179717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.934 6.934 4 O -0.933 6.933 5 C -0.591 4.591 6 H 0.143 0.857 7 C -0.110 4.110 8 C -0.129 4.129 9 C 0.102 3.898 10 N -0.614 5.614 11 C 0.515 3.485 12 O -0.531 6.531 13 C -0.136 4.136 14 C -0.107 4.107 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.129 3.871 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.262 0.738 44 H 0.084 0.916 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.457 19.973 -14.733 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.603 3.397 3 O -0.931 6.931 4 O -0.930 6.930 5 C -0.700 4.700 6 H 0.161 0.839 7 C -0.149 4.149 8 C -0.168 4.168 9 C -0.021 4.021 10 N -0.349 5.349 11 C 0.305 3.695 12 O -0.406 6.406 13 C -0.176 4.176 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.005 3.995 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.444 19.836 -15.802 33.212 hybrid contribution -0.247 -0.798 0.014 0.836 sum -21.691 19.038 -15.788 32.897 Atomic orbital electron populations 1.30284 1.26439 1.11812 1.11952 1.07953 0.78631 0.75916 0.77152 1.93601 1.79024 1.34205 1.86263 1.93634 1.78998 1.66994 1.53407 1.30758 1.06020 1.13094 1.20165 0.83911 1.21485 0.99840 0.99451 0.94093 1.21860 0.96289 1.02210 0.96447 1.21841 0.91677 0.98957 0.89604 1.48086 1.44102 1.36326 1.06388 1.21204 0.77708 0.78023 0.92614 1.90715 1.49107 1.55889 1.44904 1.21814 1.02318 1.01062 0.92425 1.21512 0.97713 0.96069 0.99253 1.21469 0.99994 0.99164 0.93304 1.19578 0.94194 0.93831 0.97707 1.21175 1.24959 1.17552 0.92046 0.91127 1.25049 0.96473 0.96579 0.95553 1.69919 1.36150 1.28457 1.19982 0.86771 0.80386 0.78496 0.83616 1.20302 1.21462 1.18895 1.21272 0.89582 1.01807 0.86879 0.85036 0.85048 0.85141 0.90155 0.89397 0.90783 0.89615 0.88532 0.90785 0.88912 0.88824 0.91703 0.91760 0.92876 0.92846 0.97029 0.96629 0.92815 0.89762 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.44 10.01 101.05 1.01 -0.42 16 2 S 2.42 15.10 4.90 -107.50 -0.53 14.57 16 3 O -0.93 -8.68 18.03 -57.83 -1.04 -9.72 16 4 O -0.93 -10.02 18.10 -57.83 -1.05 -11.06 16 5 C -0.59 -3.32 2.79 -26.39 -0.07 -3.39 16 6 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 7 C -0.11 -0.38 4.91 -26.70 -0.13 -0.51 16 8 C -0.13 -0.52 6.08 -26.61 -0.16 -0.68 16 9 C 0.10 0.62 6.34 -3.71 -0.02 0.59 16 10 N -0.61 -5.94 2.97 -172.50 -0.51 -6.45 16 11 C 0.51 6.82 7.70 -10.98 -0.08 6.74 16 12 O -0.53 -9.28 15.39 5.55 0.09 -9.19 16 13 C -0.14 -1.66 4.05 -27.88 -0.11 -1.78 16 14 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 15 C -0.10 -1.97 5.15 -26.74 -0.14 -2.10 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 21 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 25 C 0.13 1.17 5.74 -3.48 -0.02 1.15 16 26 H 0.13 0.02 6.74 -51.92 -0.35 -0.33 16 27 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.13 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.08 0.05 6.31 -51.93 -0.33 -0.28 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.52 5.93 -51.93 -0.31 0.21 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 36 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 42 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 45 H 0.11 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -40.08 368.30 -9.37 -49.45 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -7.58 Total: -6.95 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.40 Total: -16.36 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.26 Total: -33.99 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -2.00 Total: -29.98 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Atomic # 16 Polarization: 15.10 SS G_CDS: -0.53 Total: 14.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.08 -9.37 -49.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588682311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.725 kcal (2) G-P(sol) polarization free energy of solvation -40.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds