Wall clock time and date at job start Tue Mar 31 2020 11:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 108.58259 * 2 1 4 4 O 1.42098 * 108.58055 * 228.97333 * 2 1 3 5 5 C 1.81400 * 101.91965 * 114.48651 * 2 1 3 6 6 H 1.09000 * 109.49647 * 65.06638 * 5 2 1 7 7 C 1.53032 * 109.49843 * 304.99647 * 5 2 1 8 8 C 1.53038 * 109.53819 * 178.65145 * 7 5 2 9 9 C 1.53194 * 109.31461 * 61.36787 * 8 7 5 10 10 N 1.46923 * 108.77264 * 305.36678 * 9 8 7 11 11 C 1.34783 * 120.62864 * 233.58665 * 10 9 8 12 12 O 1.21283 * 119.99731 * 180.02562 * 11 10 9 13 13 C 1.50702 * 120.00007 * 359.97438 * 11 10 9 14 14 C 1.53003 * 109.46878 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46838 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.46925 * 118.74183 * 53.85800 * 10 9 8 26 26 H 1.09006 * 109.47166 * 305.51828 * 1 2 3 27 27 H 1.09006 * 109.47240 * 65.50873 * 1 2 3 28 28 H 1.08990 * 109.47387 * 185.51500 * 1 2 3 29 29 H 1.09003 * 109.45773 * 58.63326 * 7 5 2 30 30 H 1.09000 * 109.46594 * 298.67523 * 7 5 2 31 31 H 1.08997 * 109.50231 * 301.41447 * 8 7 5 32 32 H 1.09002 * 109.52817 * 181.33266 * 8 7 5 33 33 H 1.08997 * 109.58975 * 185.57784 * 9 8 7 34 34 H 1.08997 * 109.58395 * 65.15265 * 9 8 7 35 35 H 1.08998 * 109.46799 * 60.00721 * 13 11 10 36 36 H 1.09002 * 109.46835 * 300.00164 * 13 11 10 37 37 H 1.08998 * 109.46943 * 60.00655 * 14 13 11 38 38 H 1.08994 * 109.47116 * 300.00266 * 14 13 11 39 39 H 1.09004 * 109.46806 * 60.00265 * 15 14 13 40 40 H 1.09000 * 109.47828 * 300.00570 * 15 14 13 41 41 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 42 42 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 43 43 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58462 * 65.92993 * 25 10 9 45 45 H 1.08996 * 109.58834 * 186.35230 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 1 1.8399 -1.7682 1.6344 7 6 1.4846 0.0618 2.7154 8 6 1.7728 -0.5779 4.0755 9 6 3.2808 -0.5428 4.3426 10 7 3.9755 -1.1810 3.2162 11 6 4.8480 -2.1863 3.4282 12 8 5.4155 -2.7046 2.4900 13 6 5.1192 -2.6654 4.8310 14 6 6.1398 -3.8046 4.7924 15 6 6.4157 -4.2906 6.2167 16 6 7.4367 -5.4293 6.1782 17 6 7.7080 -5.9084 7.5811 18 1 7.2023 -5.4472 8.4165 19 6 8.5970 -6.9399 7.7975 20 7 8.8296 -7.3617 9.0213 21 14 9.4711 -7.7382 6.3525 22 1 10.7467 -7.0246 6.0900 23 1 9.7560 -9.1605 6.6707 24 1 8.6055 -7.6642 5.1481 25 6 3.7057 -0.6986 1.8549 26 1 -0.3634 0.5971 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0988 29 1 0.4098 0.0603 2.5338 30 1 1.8518 1.0881 2.7117 31 1 1.4280 -1.6119 4.0716 32 1 1.2520 -0.0238 4.8564 33 1 3.5017 -1.0845 5.2623 34 1 3.6112 0.4916 4.4369 35 1 4.1919 -3.0229 5.2785 36 1 5.5160 -1.8425 5.4256 37 1 7.0671 -3.4466 4.3452 38 1 5.7435 -4.6275 4.1977 39 1 5.4885 -4.6484 6.6644 40 1 6.8122 -3.4675 6.8112 41 1 8.3638 -5.0711 5.7307 42 1 7.0407 -6.2526 5.5838 43 1 9.4553 -8.0871 9.1735 44 1 4.0701 0.3233 1.7505 45 1 4.2070 -1.3430 1.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588682311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:17 Heat of formation + Delta-G solvation = -154.601162 kcal Electronic energy + Delta-G solvation = -24612.236507 eV Core-core repulsion = 20948.223634 eV Total energy + Delta-G solvation = -3664.012873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32046 -38.67728 -38.04604 -37.11021 -36.69043 -34.70680 -34.21450 -32.56133 -31.63851 -30.39475 -27.99385 -26.22755 -24.85515 -23.59382 -22.15524 -21.69250 -19.99815 -19.77850 -18.87810 -18.35762 -17.54599 -17.32754 -16.98933 -16.80439 -16.68296 -16.28138 -15.82455 -15.62596 -15.20808 -14.83176 -14.55067 -14.40186 -14.06215 -13.92705 -13.85027 -13.75680 -13.69141 -13.55867 -13.19676 -13.10817 -13.03461 -12.87111 -12.44247 -12.29548 -12.10676 -11.99451 -11.93792 -11.76511 -11.76036 -11.49431 -11.36178 -11.29695 -11.25806 -10.76465 -10.74883 -9.77856 -8.30164 -6.32800 -1.02340 1.34098 1.35484 1.48196 1.53574 1.76738 1.88481 2.35186 2.67446 2.99159 3.05261 3.29918 3.49759 3.65500 3.86138 3.98409 4.02706 4.10416 4.11540 4.13016 4.24604 4.32228 4.54774 4.58852 4.61326 4.62992 4.66651 4.73963 4.81197 4.85207 4.91546 5.06505 5.08537 5.11972 5.19814 5.26551 5.34040 5.42859 5.59323 5.64842 5.68165 6.28005 6.29789 6.75002 7.09060 7.31961 8.86244 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002237 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.743366 B =12513.564164 C =13081.179717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.415 3.585 3 O -0.974 6.974 4 O -0.993 6.993 5 C -0.578 4.578 6 H 0.153 0.847 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.087 3.913 10 N -0.605 5.605 11 C 0.509 3.491 12 O -0.588 6.588 13 C -0.127 4.127 14 C -0.099 4.099 15 C -0.092 4.092 16 C -0.018 4.018 17 C -0.528 4.528 18 H 0.039 0.961 19 C 0.004 3.996 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.254 1.254 25 C 0.116 3.884 26 H 0.164 0.836 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.011 0.989 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.089 0.911 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.427 21.287 -14.809 36.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.602 3.398 3 O -0.971 6.971 4 O -0.990 6.990 5 C -0.688 4.688 6 H 0.171 0.829 7 C -0.154 4.154 8 C -0.165 4.165 9 C -0.034 4.034 10 N -0.338 5.338 11 C 0.299 3.701 12 O -0.468 6.468 13 C -0.166 4.166 14 C -0.137 4.137 15 C -0.129 4.129 16 C -0.056 4.056 17 C -0.566 4.566 18 H 0.058 0.942 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.009 4.009 26 H 0.182 0.818 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.414 21.204 -15.875 36.023 hybrid contribution 0.574 -1.133 0.135 1.277 sum -23.840 20.071 -15.740 34.914 Atomic orbital electron populations 1.30071 1.19887 1.14288 1.14067 1.07796 0.81037 0.74352 0.76589 1.93545 1.81279 1.35592 1.86694 1.93561 1.81604 1.67954 1.55881 1.30631 1.03454 1.14267 1.20489 0.82876 1.21701 1.01973 0.99033 0.92695 1.21893 0.94456 1.02721 0.97444 1.22262 0.93178 0.99467 0.88469 1.48138 1.42964 1.35020 1.07685 1.21378 0.77860 0.78525 0.92319 1.90695 1.51544 1.58148 1.46378 1.21715 1.02295 1.00192 0.92424 1.21303 0.98442 0.97264 0.96699 1.21320 0.98768 0.97548 0.95277 1.19585 0.95723 0.95541 0.94703 1.21531 1.24370 1.17333 0.93406 0.94245 1.25974 0.97506 0.97409 0.98381 1.70053 1.37298 1.29418 1.22253 0.85721 0.79410 0.77690 0.80216 1.19339 1.20688 1.17753 1.21340 0.92322 1.01151 0.86048 0.81773 0.84031 0.82767 0.86175 0.88961 0.90929 0.86865 0.87563 0.89438 0.86185 0.86445 0.93239 0.93150 0.92182 0.92291 0.97084 0.96909 0.92523 0.89318 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.19 10.01 113.37 1.14 0.95 16 2 S 2.41 28.46 4.90 -56.49 -0.28 28.18 16 3 O -0.97 -18.04 18.03 -127.37 -2.30 -20.34 16 4 O -0.99 -22.57 18.10 -127.37 -2.30 -24.88 16 5 C -0.58 -5.57 2.79 30.82 0.09 -5.49 16 6 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 7 C -0.12 -0.34 4.91 30.62 0.15 -0.19 16 8 C -0.13 -0.48 6.08 30.67 0.19 -0.29 16 9 C 0.09 0.79 6.34 86.36 0.55 1.34 16 10 N -0.60 -11.07 2.97 -818.06 -2.43 -13.50 16 11 C 0.51 13.34 7.70 87.66 0.67 14.02 16 12 O -0.59 -21.45 15.39 -3.04 -0.05 -21.50 16 13 C -0.13 -2.87 4.05 29.85 0.12 -2.75 16 14 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 15 C -0.09 -3.47 5.15 30.59 0.16 -3.31 16 16 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 17 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 18 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 19 C 0.00 0.24 5.47 84.66 0.46 0.71 16 20 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 21 Si 0.95 46.23 27.47 68.60 1.88 48.11 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 25 C 0.12 2.14 5.74 86.51 0.50 2.63 16 26 H 0.16 -0.94 6.74 -2.39 -0.02 -0.95 16 27 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.15 -0.53 8.14 -2.40 -0.02 -0.55 16 29 H 0.12 -0.57 6.31 -2.39 -0.02 -0.58 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.11 0.76 5.93 -2.39 -0.01 0.75 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.12 2.07 7.69 -2.39 -0.02 2.06 16 36 H 0.12 2.12 7.94 -2.39 -0.02 2.10 16 37 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.01 0.53 7.58 -2.38 -0.02 0.51 16 42 H 0.01 0.62 7.19 -2.39 -0.02 0.60 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 45 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 Total: -1.00 -92.41 368.30 0.26 -92.15 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 0.90 Total: -1.22 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 4.52 Total: -26.99 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.13 Total: -73.52 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -4.65 Total: -66.72 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Atomic # 16 Polarization: 28.46 SS G_CDS: -0.28 Total: 28.18 kcal Total: -92.41 0.26 -92.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588682311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.453 kcal (2) G-P(sol) polarization free energy of solvation -92.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds