Wall clock time and date at job start Tue Mar 31 2020 11:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42103 * 108.57666 * 2 1 4 4 O 1.42097 * 108.57805 * 228.97727 * 2 1 3 5 5 C 1.81397 * 101.92326 * 114.48834 * 2 1 3 6 6 H 1.09000 * 109.49746 * 300.06873 * 5 2 1 7 7 C 1.53042 * 109.49617 * 60.12727 * 5 2 1 8 8 C 1.53036 * 109.54058 * 181.28452 * 7 5 2 9 9 C 1.53187 * 109.33909 * 298.68652 * 8 7 5 10 10 N 1.46928 * 108.77623 * 54.61900 * 9 8 7 11 11 C 1.34782 * 120.63146 * 126.41312 * 10 9 8 12 12 O 1.21278 * 119.99668 * 179.97438 * 11 10 9 13 13 C 1.50699 * 119.99844 * 359.97438 * 11 10 9 14 14 C 1.52999 * 109.46991 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47322 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47322 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46991 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00249 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00151 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99777 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46944 * 90.00277 * 21 19 17 23 23 H 1.48494 * 109.46962 * 210.00535 * 21 19 17 24 24 H 1.48500 * 109.46963 * 330.00179 * 21 19 17 25 25 C 1.46927 * 118.73615 * 306.39196 * 10 9 8 26 26 H 1.08999 * 109.47117 * 305.51430 * 1 2 3 27 27 H 1.09002 * 109.46731 * 65.50804 * 1 2 3 28 28 H 1.08995 * 109.47125 * 185.50713 * 1 2 3 29 29 H 1.08998 * 109.42702 * 61.27868 * 7 5 2 30 30 H 1.09003 * 109.48758 * 301.32915 * 7 5 2 31 31 H 1.09002 * 109.49886 * 178.71774 * 8 7 5 32 32 H 1.09000 * 109.49395 * 58.65251 * 8 7 5 33 33 H 1.09000 * 109.58836 * 174.40473 * 9 8 7 34 34 H 1.08999 * 109.58980 * 294.83076 * 9 8 7 35 35 H 1.09000 * 109.46886 * 300.00305 * 13 11 10 36 36 H 1.08997 * 109.47158 * 59.99933 * 13 11 10 37 37 H 1.08998 * 109.47340 * 300.00381 * 14 13 11 38 38 H 1.09001 * 109.46691 * 59.99839 * 14 13 11 39 39 H 1.08998 * 109.47382 * 300.00549 * 15 14 13 40 40 H 1.09001 * 109.47211 * 60.00351 * 15 14 13 41 41 H 1.08993 * 109.47035 * 300.00227 * 16 15 14 42 42 H 1.09003 * 109.47148 * 60.00640 * 16 15 14 43 43 H 0.96999 * 120.00191 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58621 * 173.39948 * 25 10 9 45 45 H 1.09003 * 109.58297 * 293.67513 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.7603 -0.1181 2.4045 7 6 1.5913 -2.1428 1.6865 8 6 1.8793 -2.7522 3.0605 9 6 3.3943 -2.8587 3.2607 10 7 3.9934 -1.5337 3.0506 11 6 4.7908 -0.9842 3.9881 12 8 5.2797 0.1101 3.8025 13 6 5.0747 -1.7294 5.2667 14 6 5.9998 -0.8909 6.1511 15 6 6.2876 -1.6472 7.4495 16 6 7.2131 -0.8090 8.3336 17 6 7.4971 -1.5542 9.6122 18 1 7.0607 -2.5282 9.7780 19 6 8.3132 -0.9923 10.5711 20 7 8.5606 -1.6424 11.6872 21 14 9.0674 0.6925 10.2847 22 1 8.1524 1.7395 10.8059 23 1 10.3708 0.7779 10.9911 24 1 9.2787 0.8994 8.8295 25 6 3.7072 -0.8194 1.7990 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4261 -0.9352 28 1 -0.3633 -1.0229 0.0986 29 1 2.0380 -2.7661 0.9119 30 1 0.5136 -2.0886 1.5320 31 1 1.4339 -3.7453 3.1186 32 1 1.4536 -2.1165 3.8368 33 1 3.6059 -3.1989 4.2744 34 1 3.8091 -3.5654 2.5419 35 1 4.1390 -1.9166 5.7936 36 1 5.5571 -2.6789 5.0345 37 1 6.9353 -0.7041 5.6240 38 1 5.5178 0.0587 6.3833 39 1 5.3519 -1.8337 7.9765 40 1 6.7694 -2.5970 7.2176 41 1 8.1488 -0.6230 7.8064 42 1 6.7317 0.1411 8.5656 43 1 9.1350 -1.2473 12.3615 44 1 4.1253 0.1860 1.8482 45 1 4.1497 -1.3585 0.9613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588682312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:21 Heat of formation + Delta-G solvation = -124.426028 kcal Electronic energy + Delta-G solvation = -24610.859945 eV Core-core repulsion = 20948.155564 eV Total energy + Delta-G solvation = -3662.704381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.48569 -37.94439 -37.42766 -36.51168 -35.10250 -33.64697 -32.62147 -31.89065 -30.30322 -29.94739 -26.62616 -25.37601 -24.11455 -22.33394 -21.31817 -20.06321 -19.38016 -19.13707 -17.61943 -16.97861 -16.75611 -16.50560 -16.37882 -15.93067 -15.84741 -15.31891 -14.65353 -14.56410 -14.19755 -13.83737 -13.81215 -13.69529 -13.45308 -13.43097 -12.75257 -12.59225 -12.56594 -12.46607 -12.38258 -12.18482 -11.79693 -11.72543 -11.64703 -11.54021 -11.35506 -11.13521 -10.85505 -10.72594 -10.55499 -9.97242 -9.83052 -9.65959 -9.44663 -9.12739 -9.02641 -8.49818 -6.01099 -3.98602 -0.58477 2.16188 2.50769 2.64508 3.13315 3.35304 3.39855 3.42469 3.48648 3.82507 3.89985 4.20990 4.23666 4.36119 4.38588 4.49850 4.51569 4.64230 4.81755 4.94994 5.05348 5.12733 5.14299 5.15360 5.22906 5.24204 5.30617 5.33903 5.35246 5.62992 5.72815 5.99514 6.04474 6.14428 6.39076 6.65925 6.79581 6.97235 7.11155 7.37104 7.49976 7.84141 8.03931 8.57489 9.03662 9.62332 11.12328 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029657 B = 0.002238 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.901656 B =12509.518213 C =13076.446434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.933 6.933 4 O -0.934 6.934 5 C -0.591 4.591 6 H 0.142 0.858 7 C -0.109 4.109 8 C -0.129 4.129 9 C 0.102 3.898 10 N -0.614 5.614 11 C 0.515 3.485 12 O -0.531 6.531 13 C -0.136 4.136 14 C -0.107 4.107 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.129 3.871 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.109 0.891 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.328 -2.993 -25.460 33.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.930 6.930 4 O -0.931 6.931 5 C -0.700 4.700 6 H 0.160 0.840 7 C -0.147 4.147 8 C -0.168 4.168 9 C -0.021 4.021 10 N -0.349 5.349 11 C 0.305 3.695 12 O -0.406 6.406 13 C -0.176 4.176 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.004 3.996 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.127 0.873 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.359 -2.069 -26.037 33.116 hybrid contribution -0.350 0.558 0.656 0.930 sum -20.709 -1.511 -25.381 32.792 Atomic orbital electron populations 1.30272 1.26411 1.11738 1.12017 1.07954 0.78639 0.75747 0.77308 1.93635 1.78998 1.34160 1.86194 1.93600 1.79033 1.67007 1.53440 1.30678 1.06332 1.09220 1.23810 0.83960 1.21456 1.00721 0.92202 1.00371 1.21859 0.96286 1.02110 0.96558 1.21843 0.92854 0.83883 1.03505 1.48085 1.49616 1.19237 1.17949 1.21200 0.77177 0.86236 0.84932 1.90715 1.50230 1.20803 1.78850 1.21812 1.02488 1.00464 0.92859 1.21511 0.98621 0.98534 0.95878 1.21469 1.00045 0.98794 0.93627 1.19576 0.94752 0.95600 0.95378 1.21175 1.29361 1.05144 1.00052 0.91123 1.25047 0.96062 0.97578 0.94954 1.69917 1.38223 1.38481 1.07888 0.86771 0.78723 0.84841 0.78949 1.20329 1.21452 1.18883 1.21164 0.89328 1.00842 0.88219 0.85142 0.85045 0.85084 0.89313 0.90250 0.89610 0.90800 0.88532 0.90780 0.88911 0.88825 0.91692 0.91774 0.92897 0.92820 0.96593 0.97066 0.92813 0.87324 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.47 10.17 101.05 1.03 -0.44 16 2 S 2.42 15.07 4.88 -107.50 -0.53 14.55 16 3 O -0.93 -9.99 18.10 -57.83 -1.05 -11.04 16 4 O -0.93 -8.63 17.94 -57.83 -1.04 -9.66 16 5 C -0.59 -3.32 2.73 -26.62 -0.07 -3.39 16 6 H 0.14 0.64 8.14 -51.92 -0.42 0.21 16 7 C -0.11 -0.39 4.94 -26.69 -0.13 -0.52 16 8 C -0.13 -0.53 6.08 -26.62 -0.16 -0.69 16 9 C 0.10 0.62 6.34 -3.71 -0.02 0.60 16 10 N -0.61 -5.95 2.97 -172.78 -0.51 -6.46 16 11 C 0.51 6.82 7.70 -10.98 -0.08 6.74 16 12 O -0.53 -9.27 15.40 5.56 0.09 -9.19 16 13 C -0.14 -1.66 4.05 -27.88 -0.11 -1.78 16 14 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 15 C -0.10 -1.97 5.15 -26.73 -0.14 -2.10 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 21 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 25 C 0.13 1.17 5.72 -3.72 -0.02 1.15 16 26 H 0.13 0.11 8.14 -51.92 -0.42 -0.32 16 27 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.13 0.03 6.84 -51.93 -0.36 -0.33 16 29 H 0.09 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.08 0.06 6.50 -51.93 -0.34 -0.27 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.53 5.93 -51.93 -0.31 0.22 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.94 7.69 -51.93 -0.40 0.55 16 36 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 37 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.11 1.22 7.01 -51.93 -0.36 0.85 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -40.02 368.58 -9.36 -49.38 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -7.60 Total: -6.91 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.38 Total: -16.39 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.26 Total: -34.00 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -2.00 Total: -29.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Atomic # 16 Polarization: 15.07 SS G_CDS: -0.53 Total: 14.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.02 -9.36 -49.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588682312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.051 kcal (2) G-P(sol) polarization free energy of solvation -40.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds