Wall clock time and date at job start Tue Mar 31 2020 11:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42103 * 108.57666 * 2 1 4 4 O 1.42097 * 108.57805 * 228.97727 * 2 1 3 5 5 C 1.81397 * 101.92326 * 114.48834 * 2 1 3 6 6 H 1.09000 * 109.49746 * 300.06873 * 5 2 1 7 7 C 1.53042 * 109.49617 * 60.12727 * 5 2 1 8 8 C 1.53036 * 109.54058 * 181.28452 * 7 5 2 9 9 C 1.53187 * 109.33909 * 298.68652 * 8 7 5 10 10 N 1.46928 * 108.77623 * 54.61900 * 9 8 7 11 11 C 1.34782 * 120.63146 * 126.41312 * 10 9 8 12 12 O 1.21278 * 119.99668 * 179.97438 * 11 10 9 13 13 C 1.50699 * 119.99844 * 359.97438 * 11 10 9 14 14 C 1.52999 * 109.46991 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47322 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47322 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46991 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00249 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00151 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99777 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46944 * 90.00277 * 21 19 17 23 23 H 1.48494 * 109.46962 * 210.00535 * 21 19 17 24 24 H 1.48500 * 109.46963 * 330.00179 * 21 19 17 25 25 C 1.46927 * 118.73615 * 306.39196 * 10 9 8 26 26 H 1.08999 * 109.47117 * 305.51430 * 1 2 3 27 27 H 1.09002 * 109.46731 * 65.50804 * 1 2 3 28 28 H 1.08995 * 109.47125 * 185.50713 * 1 2 3 29 29 H 1.08998 * 109.42702 * 61.27868 * 7 5 2 30 30 H 1.09003 * 109.48758 * 301.32915 * 7 5 2 31 31 H 1.09002 * 109.49886 * 178.71774 * 8 7 5 32 32 H 1.09000 * 109.49395 * 58.65251 * 8 7 5 33 33 H 1.09000 * 109.58836 * 174.40473 * 9 8 7 34 34 H 1.08999 * 109.58980 * 294.83076 * 9 8 7 35 35 H 1.09000 * 109.46886 * 300.00305 * 13 11 10 36 36 H 1.08997 * 109.47158 * 59.99933 * 13 11 10 37 37 H 1.08998 * 109.47340 * 300.00381 * 14 13 11 38 38 H 1.09001 * 109.46691 * 59.99839 * 14 13 11 39 39 H 1.08998 * 109.47382 * 300.00549 * 15 14 13 40 40 H 1.09001 * 109.47211 * 60.00351 * 15 14 13 41 41 H 1.08993 * 109.47035 * 300.00227 * 16 15 14 42 42 H 1.09003 * 109.47148 * 60.00640 * 16 15 14 43 43 H 0.96999 * 120.00191 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58621 * 173.39948 * 25 10 9 45 45 H 1.09003 * 109.58297 * 293.67513 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.7603 -0.1181 2.4045 7 6 1.5913 -2.1428 1.6865 8 6 1.8793 -2.7522 3.0605 9 6 3.3943 -2.8587 3.2607 10 7 3.9934 -1.5337 3.0506 11 6 4.7908 -0.9842 3.9881 12 8 5.2797 0.1101 3.8025 13 6 5.0747 -1.7294 5.2667 14 6 5.9998 -0.8909 6.1511 15 6 6.2876 -1.6472 7.4495 16 6 7.2131 -0.8090 8.3336 17 6 7.4971 -1.5542 9.6122 18 1 7.0607 -2.5282 9.7780 19 6 8.3132 -0.9923 10.5711 20 7 8.5606 -1.6424 11.6872 21 14 9.0674 0.6925 10.2847 22 1 8.1524 1.7395 10.8059 23 1 10.3708 0.7779 10.9911 24 1 9.2787 0.8994 8.8295 25 6 3.7072 -0.8194 1.7990 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4261 -0.9352 28 1 -0.3633 -1.0229 0.0986 29 1 2.0380 -2.7661 0.9119 30 1 0.5136 -2.0886 1.5320 31 1 1.4339 -3.7453 3.1186 32 1 1.4536 -2.1165 3.8368 33 1 3.6059 -3.1989 4.2744 34 1 3.8091 -3.5654 2.5419 35 1 4.1390 -1.9166 5.7936 36 1 5.5571 -2.6789 5.0345 37 1 6.9353 -0.7041 5.6240 38 1 5.5178 0.0587 6.3833 39 1 5.3519 -1.8337 7.9765 40 1 6.7694 -2.5970 7.2176 41 1 8.1488 -0.6230 7.8064 42 1 6.7317 0.1411 8.5656 43 1 9.1350 -1.2473 12.3615 44 1 4.1253 0.1860 1.8482 45 1 4.1497 -1.3585 0.9613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588682312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:20 Heat of formation + Delta-G solvation = -154.751772 kcal Electronic energy + Delta-G solvation = -24612.174968 eV Core-core repulsion = 20948.155564 eV Total energy + Delta-G solvation = -3664.019404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32485 -38.68245 -38.05111 -37.10913 -36.68936 -34.70690 -34.20551 -32.57244 -31.64243 -30.39136 -27.99790 -26.24490 -24.85090 -23.59665 -22.15120 -21.68977 -19.99820 -19.78195 -18.87719 -18.35673 -17.55541 -17.32642 -16.97761 -16.79202 -16.69506 -16.28170 -15.82607 -15.62025 -15.20670 -14.83644 -14.53100 -14.42669 -14.07008 -13.92310 -13.86797 -13.73008 -13.70714 -13.56456 -13.19458 -13.11198 -13.03513 -12.86907 -12.42403 -12.30334 -12.09871 -12.00426 -11.93850 -11.76556 -11.76216 -11.49532 -11.35867 -11.29931 -11.25857 -10.76405 -10.74713 -9.78304 -8.30079 -6.32743 -1.02609 1.33908 1.35743 1.48361 1.53718 1.76640 1.88349 2.35266 2.67442 2.98479 3.05333 3.31203 3.49561 3.65705 3.86145 3.98435 4.02343 4.10116 4.11419 4.12597 4.24388 4.32852 4.54823 4.58919 4.61396 4.62986 4.66595 4.74083 4.81334 4.85229 4.91746 5.06100 5.08537 5.12083 5.19869 5.26673 5.34051 5.42734 5.59446 5.64960 5.68240 6.28052 6.29846 6.75076 7.09135 7.32033 8.86325 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029657 B = 0.002238 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.901656 B =12509.518213 C =13076.446434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.415 3.585 3 O -0.992 6.992 4 O -0.973 6.973 5 C -0.579 4.579 6 H 0.155 0.845 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.087 3.913 10 N -0.605 5.605 11 C 0.509 3.491 12 O -0.587 6.587 13 C -0.127 4.127 14 C -0.099 4.099 15 C -0.092 4.092 16 C -0.018 4.018 17 C -0.528 4.528 18 H 0.039 0.961 19 C 0.004 3.996 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.254 1.254 25 C 0.116 3.884 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.266 0.734 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.230 -3.845 -26.521 36.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.603 3.397 3 O -0.989 6.989 4 O -0.970 6.970 5 C -0.689 4.689 6 H 0.173 0.827 7 C -0.153 4.153 8 C -0.165 4.165 9 C -0.034 4.034 10 N -0.338 5.338 11 C 0.300 3.700 12 O -0.467 6.467 13 C -0.166 4.166 14 C -0.137 4.137 15 C -0.129 4.129 16 C -0.055 4.055 17 C -0.566 4.566 18 H 0.058 0.942 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.009 4.009 26 H 0.171 0.829 27 H 0.160 0.840 28 H 0.182 0.818 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.258 -2.961 -27.138 35.864 hybrid contribution 0.460 0.698 0.990 1.295 sum -22.799 -2.263 -26.148 34.766 Atomic orbital electron populations 1.30062 1.19970 1.14569 1.13706 1.07786 0.80995 0.74021 0.76923 1.93563 1.81576 1.36865 1.86927 1.93545 1.81249 1.67245 1.54978 1.30554 1.03642 1.11272 1.23389 0.82713 1.21663 1.03062 0.90227 1.00333 1.21890 0.94339 1.03674 0.96598 1.22258 0.94593 0.81919 1.04596 1.48135 1.48328 1.20293 1.17044 1.21371 0.77256 0.85641 0.85781 1.90694 1.52723 1.23224 1.80077 1.21714 1.02921 1.00133 0.91866 1.21303 0.98925 0.98402 0.95076 1.21320 0.99186 0.98330 0.94081 1.19584 0.95806 0.95936 0.94223 1.21530 1.28830 1.04334 1.01950 0.94250 1.25973 0.96770 1.01839 0.94683 1.70051 1.39394 1.40557 1.09027 0.85719 0.78093 0.79828 0.79395 1.19218 1.20736 1.17826 1.21231 0.92237 0.99249 0.88138 0.82850 0.84048 0.81825 0.89124 0.86293 0.86924 0.90839 0.87531 0.89512 0.86144 0.86493 0.93318 0.93052 0.92138 0.92343 0.97005 0.96983 0.92521 0.90524 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.30 10.17 113.37 1.15 0.85 16 2 S 2.42 28.37 4.88 -56.49 -0.28 28.09 16 3 O -0.99 -22.51 18.10 -127.37 -2.31 -24.82 16 4 O -0.97 -17.85 17.94 -127.37 -2.28 -20.14 16 5 C -0.58 -5.55 2.73 30.67 0.08 -5.47 16 6 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 7 C -0.11 -0.38 4.94 30.62 0.15 -0.23 16 8 C -0.13 -0.50 6.08 30.67 0.19 -0.31 16 9 C 0.09 0.80 6.34 86.36 0.55 1.35 16 10 N -0.60 -11.08 2.97 -818.93 -2.43 -13.51 16 11 C 0.51 13.32 7.70 87.66 0.67 14.00 16 12 O -0.59 -21.38 15.40 -3.02 -0.05 -21.42 16 13 C -0.13 -2.87 4.05 29.85 0.12 -2.75 16 14 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 15 C -0.09 -3.46 5.15 30.59 0.16 -3.31 16 16 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 17 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 18 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 19 C 0.00 0.24 5.47 84.66 0.46 0.71 16 20 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 21 Si 0.95 46.20 27.47 68.60 1.88 48.08 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 25 C 0.12 2.14 5.72 86.36 0.49 2.63 16 26 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.16 -0.90 6.84 -2.39 -0.02 -0.92 16 29 H 0.09 0.33 8.09 -2.39 -0.02 0.31 16 30 H 0.12 -0.51 6.50 -2.39 -0.02 -0.53 16 31 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.77 5.93 -2.39 -0.01 0.76 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 2.07 7.69 -2.39 -0.02 2.05 16 36 H 0.12 2.11 7.94 -2.39 -0.02 2.09 16 37 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16 42 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.08 1.91 7.01 -2.39 -0.02 1.89 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -92.10 368.58 0.28 -91.82 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 0.90 Total: -0.99 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.54 Total: -27.11 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.13 Total: -73.52 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -4.64 Total: -66.38 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Atomic # 16 Polarization: 28.37 SS G_CDS: -0.28 Total: 28.09 kcal Total: -92.10 0.28 -91.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588682312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.930 kcal (2) G-P(sol) polarization free energy of solvation -92.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds